Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.50696 * 109.47265 * 239.99823 * 2 1 3 5 5 H 1.07998 * 120.00056 * 239.99908 * 4 2 1 6 6 C 1.37881 * 120.00096 * 60.00426 * 4 2 1 7 7 N 1.31514 * 119.99899 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00143 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47349 * 119.99631 * 8 6 4 11 11 H 1.48498 * 109.47081 * 239.99879 * 8 6 4 12 12 C 1.52996 * 109.47060 * 119.99749 * 2 1 3 13 13 S 1.81399 * 109.47218 * 300.00274 * 12 2 1 14 14 O 1.42101 * 110.54272 * 291.62572 * 13 12 2 15 15 O 1.42102 * 110.54259 * 68.37729 * 13 12 2 16 16 N 1.65600 * 104.45301 * 179.97438 * 13 12 2 17 17 C 1.46506 * 119.99871 * 64.99838 * 16 13 12 18 18 C 1.52998 * 109.47172 * 165.00356 * 17 16 13 19 19 C 1.52990 * 112.84997 * 48.80287 * 18 17 16 20 20 C 1.53784 * 113.60929 * 277.49709 * 18 17 16 21 21 C 1.53789 * 87.07799 * 220.01886 * 20 18 17 22 22 C 1.53782 * 87.08124 * 25.43451 * 21 20 18 23 23 H 1.08992 * 109.47428 * 299.99990 * 1 2 3 24 24 H 1.09007 * 109.46764 * 60.00501 * 1 2 3 25 25 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47323 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47194 * 299.99844 * 3 2 1 28 28 H 1.09002 * 109.47017 * 59.99753 * 3 2 1 29 29 H 0.97002 * 120.00322 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47469 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47079 * 60.00076 * 12 2 1 32 32 H 0.97002 * 120.00444 * 245.00380 * 16 13 12 33 33 H 1.08997 * 109.47025 * 285.00903 * 17 16 13 34 34 H 1.08997 * 109.46718 * 44.99833 * 17 16 13 35 35 H 1.09006 * 109.47256 * 69.66962 * 19 18 17 36 36 H 1.08999 * 109.47202 * 189.66725 * 19 18 17 37 37 H 1.09000 * 109.47735 * 309.66655 * 19 18 17 38 38 H 1.08997 * 113.61893 * 334.56384 * 20 18 17 39 39 H 1.08997 * 113.61040 * 105.47367 * 20 18 17 40 40 H 1.09003 * 113.61444 * 270.88475 * 21 20 18 41 41 H 1.09002 * 113.68928 * 139.99270 * 21 20 18 42 42 H 1.08990 * 113.61368 * 220.01774 * 22 21 20 43 43 H 1.09000 * 113.61194 * 89.11365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 3.1485 -2.2856 -3.6037 10 1 1.1681 -1.5867 -4.8165 11 1 3.1475 -0.1858 -4.8160 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1339 2.7303 14 8 2.0478 1.4101 2.8543 15 8 0.0279 -0.0183 2.8543 16 7 2.0528 -0.7407 3.9937 17 6 3.5013 -0.7980 4.2061 18 6 3.7901 -1.3344 5.6095 19 6 3.0073 -2.6089 5.9311 20 6 3.7037 -0.2622 6.7086 21 6 4.9387 -0.9244 7.3420 22 6 5.2899 -1.4341 5.9343 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.7083 1.1609 -3.4845 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 1.4556 -1.2151 4.5930 33 1 3.9513 -1.4584 3.4649 34 1 3.9231 0.2020 4.1053 35 1 3.3933 -3.4335 5.3317 36 1 3.1180 -2.8461 6.9892 37 1 1.9528 -2.4554 5.7017 38 1 3.8879 0.7495 6.3471 39 1 2.8056 -0.3368 7.3216 40 1 4.6947 -1.7199 8.0462 41 1 5.6610 -0.2124 7.7414 42 1 5.6723 -2.4547 5.9223 43 1 5.9077 -0.7428 5.3611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332035123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -85.195952 kcal Electronic energy + Delta-G solvation = -22459.970837 eV Core-core repulsion = 19245.875932 eV Total energy + Delta-G solvation = -3214.094904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54853 -38.12140 -38.07992 -36.87927 -35.63674 -33.62681 -30.17976 -28.30102 -27.68915 -27.57393 -27.22796 -26.46093 -23.06704 -21.39444 -20.24440 -19.29486 -18.66145 -17.90351 -17.47896 -16.92228 -16.62974 -16.28131 -15.81975 -15.33507 -15.12092 -14.93823 -14.64528 -14.42319 -14.15747 -13.81656 -13.54234 -13.13523 -13.03326 -12.99692 -12.90460 -12.79458 -12.71690 -12.64880 -12.48734 -12.18402 -12.11582 -12.03294 -11.94063 -11.56467 -11.38580 -11.33918 -11.10303 -11.00444 -10.64917 -10.41825 -10.19440 -8.02645 -6.21247 -0.57765 1.43357 1.46355 1.55931 1.94625 2.44622 2.87460 3.19715 3.33070 3.62460 3.67328 3.81715 4.01454 4.02461 4.17854 4.21510 4.42040 4.59531 4.64625 4.71823 4.80589 4.86917 4.87591 4.93099 4.97373 4.99944 5.01264 5.05585 5.09532 5.13383 5.27801 5.28481 5.39172 5.50791 5.51645 5.65219 5.66504 5.97594 6.11728 6.16604 6.34596 6.83824 7.47127 8.97423 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.004314 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.247022 B = 6489.377098 C = 6937.314178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 C -0.159 4.159 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.585 4.585 13 S 2.613 3.387 14 O -0.993 6.993 15 O -0.996 6.996 16 N -1.111 6.111 17 C 0.118 3.882 18 C -0.092 4.092 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.134 4.134 22 C -0.127 4.127 23 H 0.031 0.969 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -7.231 17.464 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 C -0.217 4.217 4 C -0.554 4.554 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.718 4.718 13 S 2.710 3.290 14 O -0.982 6.982 15 O -0.986 6.986 16 N -0.874 5.874 17 C -0.008 4.008 18 C -0.094 4.094 19 C -0.189 4.189 20 C -0.180 4.180 21 C -0.171 4.171 22 C -0.165 4.165 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.258 0.742 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.384 -6.236 17.329 19.842 hybrid contribution 0.069 -0.689 -1.218 1.401 sum 7.453 -6.925 16.111 19.054 Atomic orbital electron populations 1.22203 0.97813 1.00460 1.01278 1.17940 0.92320 0.92198 0.91018 1.22194 0.99823 0.98361 1.01286 1.21323 1.31531 1.12230 0.90359 0.91826 1.25689 0.95201 0.95659 1.01712 1.69956 1.37252 1.23772 1.23754 0.85549 0.78019 0.78726 0.79582 1.18896 1.21017 1.20976 1.30440 1.12540 1.13358 1.15424 1.04690 0.73440 0.74922 0.75898 1.93495 1.78468 1.40249 1.86026 1.93500 1.31643 1.87117 1.86320 1.55418 1.15436 1.70710 1.45840 1.21572 0.78766 1.01737 0.98740 1.22081 0.97826 0.96918 0.92571 1.21626 0.99416 0.95246 1.02592 1.23099 0.99358 0.97920 0.97609 1.22796 0.97308 1.00490 0.96510 1.22995 0.93943 1.02576 0.96990 0.94977 0.91089 0.94128 0.94061 0.91158 0.94914 0.92969 0.84529 0.84480 0.74190 0.90150 0.91102 0.91202 0.90869 0.92436 0.90929 0.91395 0.89130 0.91029 0.89976 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.00 7.78 71.98 0.56 -7.44 16 2 C 0.07 3.25 0.52 -52.93 -0.03 3.22 16 3 C -0.16 -7.92 7.77 71.98 0.56 -7.36 16 4 C -0.52 -26.75 8.01 25.60 0.21 -26.55 16 5 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.88 5.15 84.66 0.44 1.32 16 7 N -0.91 -50.47 9.35 21.45 0.20 -50.27 16 8 Si 0.96 42.06 29.54 68.60 2.03 44.08 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C -0.59 -21.91 5.01 71.98 0.36 -21.55 16 13 S 2.61 94.48 4.49 -56.49 -0.25 94.23 16 14 O -0.99 -41.37 15.12 -127.65 -1.93 -43.30 16 15 O -1.00 -41.55 15.70 -127.65 -2.00 -43.56 16 16 N -1.11 -28.41 5.76 -187.49 -1.08 -29.49 16 17 C 0.12 2.54 5.61 86.38 0.48 3.02 16 18 C -0.09 -1.53 1.14 -51.66 -0.06 -1.59 16 19 C -0.13 -1.84 8.91 71.98 0.64 -1.20 16 20 C -0.14 -2.43 7.21 31.12 0.22 -2.21 16 21 C -0.13 -1.73 7.73 31.12 0.24 -1.49 16 22 C -0.13 -1.73 7.23 31.12 0.23 -1.51 16 23 H 0.03 1.54 5.46 -2.39 -0.01 1.52 16 24 H 0.07 3.88 6.07 -2.38 -0.01 3.87 16 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 3.83 6.07 -2.38 -0.01 3.82 16 28 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 29 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 31 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 32 H 0.42 9.20 6.52 -96.74 -0.63 8.57 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.68 7.50 -2.39 -0.02 1.66 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 0.84 7.34 -2.39 -0.02 0.82 16 37 H 0.06 0.84 6.07 -2.39 -0.01 0.82 16 38 H 0.07 1.42 7.96 -2.39 -0.02 1.40 16 39 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 40 H 0.09 0.97 7.64 -2.39 -0.02 0.95 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 43 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -66.28 336.79 1.17 -65.11 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.36 Total: 26.52 kcal Atomic # 6 Polarization: -67.18 SS G_CDS: 3.85 Total: -63.33 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -0.88 Total: -79.76 kcal Atomic # 8 Polarization: -82.93 SS G_CDS: -3.93 Total: -86.86 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 94.48 SS G_CDS: -0.25 Total: 94.23 kcal Total: -66.28 1.17 -65.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332035123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.083 kcal (2) G-P(sol) polarization free energy of solvation -66.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds