Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47398 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00499 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.53001 * 109.47159 * 240.00475 * 2 1 3 13 13 S 1.81401 * 109.47441 * 59.99910 * 12 2 1 14 14 O 1.42093 * 110.54285 * 291.62644 * 13 12 2 15 15 O 1.42105 * 110.53993 * 68.37605 * 13 12 2 16 16 N 1.65597 * 104.44946 * 180.02562 * 13 12 2 17 17 C 1.46495 * 120.00114 * 64.99944 * 16 13 12 18 18 H 1.09000 * 112.84720 * 16.69234 * 17 16 13 19 19 C 1.53781 * 113.61700 * 245.49447 * 17 16 13 20 20 C 1.53780 * 87.07978 * 270.88372 * 19 17 16 21 21 C 1.53783 * 87.08467 * 334.56689 * 20 19 17 22 22 C 1.52998 * 113.61119 * 270.88656 * 21 20 19 23 23 C 1.52994 * 113.61583 * 139.98262 * 21 20 19 24 24 H 1.08997 * 109.47084 * 300.00348 * 1 2 3 25 25 H 1.09007 * 109.46899 * 59.99996 * 1 2 3 26 26 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47109 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47204 * 300.00065 * 3 2 1 29 29 H 1.09006 * 109.46531 * 60.00060 * 3 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47065 * 180.02562 * 12 2 1 32 32 H 1.09006 * 109.46890 * 299.99671 * 12 2 1 33 33 H 0.97003 * 120.00196 * 244.99875 * 16 13 12 34 34 H 1.08995 * 113.61245 * 25.42900 * 19 17 16 35 35 H 1.09000 * 113.60959 * 156.25198 * 19 17 16 36 36 H 1.08997 * 113.61509 * 89.11240 * 20 19 17 37 37 H 1.09001 * 113.61378 * 219.93630 * 20 19 17 38 38 H 1.09008 * 109.47027 * 157.49907 * 22 21 20 39 39 H 1.09003 * 109.47375 * 277.49228 * 22 21 20 40 40 H 1.08998 * 109.47474 * 37.49651 * 22 21 20 41 41 H 1.09000 * 109.47351 * 322.49968 * 23 21 20 42 42 H 1.09000 * 109.47737 * 82.50295 * 23 21 20 43 43 H 1.08997 * 109.47044 * 202.50409 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6495 -1.5911 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9476 0.8330 2.6034 8 14 2.3156 -1.1246 4.0078 9 1 3.6255 -0.5558 4.4149 10 1 1.3363 -0.9508 5.1106 11 1 2.4747 -2.5708 3.7105 12 6 2.0400 -0.7212 -1.2493 13 16 1.4354 0.1340 -2.7304 14 8 0.0281 -0.0182 -2.8545 15 8 2.0480 1.4102 -2.8543 16 7 2.0530 -0.7406 -3.9937 17 6 1.6233 -2.1250 -4.2055 18 1 0.7071 -2.3706 -3.6686 19 6 2.7474 -3.1559 -4.0094 20 6 3.0698 -2.9714 -5.5017 21 6 1.6038 -2.5444 -5.6849 22 6 0.6581 -3.7106 -5.9789 23 6 1.4231 -1.3727 -6.6519 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7136 1.1645 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6767 -1.7489 -1.2493 33 1 2.6994 -0.3363 -4.5934 34 1 3.5418 -2.8146 -3.3457 35 1 2.3862 -4.1534 -3.7594 36 1 3.7849 -2.1728 -5.6984 37 1 3.3222 -3.9009 -6.0120 38 1 -0.3597 -3.4305 -5.7069 39 1 0.6970 -3.9511 -7.0414 40 1 0.9629 -4.5810 -5.3980 41 1 2.2437 -0.6667 -6.5247 42 1 1.4190 -1.7443 -7.6766 43 1 0.4776 -0.8720 -6.4433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332057853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -65.930205 kcal Electronic energy + Delta-G solvation = -22833.799538 eV Core-core repulsion = 19620.540059 eV Total energy + Delta-G solvation = -3213.259479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07261 -36.49446 -36.26083 -35.28025 -33.04927 -31.66095 -30.53976 -27.51085 -26.59524 -25.70791 -25.23897 -24.90422 -22.49350 -19.60937 -18.89528 -18.57526 -17.29915 -15.98739 -15.85685 -15.32644 -15.06514 -14.81485 -14.62810 -14.45867 -13.80294 -13.36796 -13.12046 -12.97326 -12.50036 -12.46519 -12.26702 -12.07767 -11.84053 -11.75268 -11.59608 -11.41494 -11.11613 -11.06493 -10.94019 -10.82133 -10.69615 -10.44678 -10.34278 -10.26781 -10.09097 -10.06980 -9.64403 -9.58961 -9.14718 -8.66166 -8.39694 -6.02969 -4.14871 0.88856 3.20840 3.25885 3.33196 3.35124 4.23619 4.32115 4.39221 4.46437 4.64988 4.75372 4.86376 5.07031 5.20954 5.23396 5.39835 5.49363 5.55472 5.65702 5.70348 5.72642 5.74342 5.84516 5.89289 5.91121 5.98312 6.09046 6.26150 6.39333 6.46255 6.71469 6.80601 6.91695 7.03437 7.17426 7.32441 7.51261 7.68301 7.98718 8.10302 8.33660 8.83628 9.50471 10.98350 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.004886 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.804468 B = 5729.527351 C = 6251.838872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.501 4.501 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.580 4.580 13 S 2.594 3.406 14 O -0.964 6.964 15 O -0.966 6.966 16 N -1.109 6.109 17 C 0.133 3.867 18 H 0.103 0.897 19 C -0.161 4.161 20 C -0.131 4.131 21 C -0.092 4.092 22 C -0.128 4.128 23 C -0.135 4.135 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.262 0.738 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -7.801 -15.293 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.714 4.714 13 S 2.692 3.308 14 O -0.953 6.953 15 O -0.956 6.956 16 N -0.863 5.863 17 C 0.025 3.975 18 H 0.121 0.879 19 C -0.201 4.201 20 C -0.168 4.168 21 C -0.094 4.094 22 C -0.186 4.186 23 C -0.192 4.192 24 H 0.113 0.887 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.244 0.756 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.866 -6.965 -15.150 16.778 hybrid contribution 1.104 -0.865 0.901 1.667 sum 2.970 -7.830 -14.249 16.528 Atomic orbital electron populations 1.22269 0.96915 1.00597 1.02322 1.17931 0.92816 0.92190 0.89122 1.22276 0.99701 0.97858 1.02306 1.20940 1.31800 1.11918 0.89398 0.92328 1.24940 0.94875 0.95009 0.98919 1.69805 1.36446 1.22478 1.23447 0.86539 0.78578 0.79964 0.82570 1.20668 1.21138 1.19973 1.30532 1.11278 1.12734 1.16825 1.05620 0.74954 0.74639 0.75613 1.93539 1.29882 1.86424 1.85499 1.93553 1.78167 1.38116 1.85811 1.55646 1.60456 1.23093 1.47149 1.21753 0.97445 0.81114 0.97230 0.87914 1.23457 0.99621 0.99804 0.97183 1.23023 0.95807 1.01427 0.96585 1.22158 0.96029 0.96361 0.94815 1.21588 0.98944 0.96475 1.01593 1.21665 1.02296 0.97177 0.98096 0.88716 0.95324 0.94494 0.94502 0.95409 0.88636 0.92762 0.86341 0.86456 0.75618 0.90464 0.89082 0.90185 0.91401 0.91849 0.92198 0.92103 0.92581 0.92697 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 4 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C -0.58 -11.24 5.01 37.16 0.19 -11.05 16 13 S 2.59 47.87 4.47 -107.50 -0.48 47.39 16 14 O -0.96 -20.21 15.18 -57.54 -0.87 -21.08 16 15 O -0.97 -20.34 15.70 -57.54 -0.90 -21.24 16 16 N -1.11 -15.09 5.02 -4.20 -0.02 -15.11 16 17 C 0.13 1.60 3.85 -67.12 -0.26 1.34 16 18 H 0.10 1.31 7.70 -51.93 -0.40 0.91 16 19 C -0.16 -1.62 7.53 -25.92 -0.20 -1.81 16 20 C -0.13 -1.17 7.03 -25.92 -0.18 -1.35 16 21 C -0.09 -0.91 1.36 -153.70 -0.21 -1.12 16 22 C -0.13 -1.10 9.07 37.16 0.34 -0.76 16 23 C -0.13 -1.34 8.60 37.15 0.32 -1.02 16 24 H 0.09 2.52 6.08 -51.93 -0.32 2.20 16 25 H 0.03 0.67 5.46 -51.92 -0.28 0.39 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.10 2.55 6.06 -51.93 -0.31 2.23 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 32 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 33 H 0.41 4.82 7.51 -34.47 -0.26 4.56 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 36 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 37 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 41 H 0.06 0.53 6.77 -51.93 -0.35 0.18 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -31.10 337.70 -8.73 -39.83 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.17 Total: 6.30 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 0.13 Total: -33.15 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.50 Total: -38.73 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.78 Total: -42.32 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.48 Total: 47.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.10 -8.73 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332057853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.098 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds