Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47398 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00499 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.53001 * 109.47159 * 240.00475 * 2 1 3 13 13 S 1.81401 * 109.47441 * 59.99910 * 12 2 1 14 14 O 1.42093 * 110.54285 * 291.62644 * 13 12 2 15 15 O 1.42105 * 110.53993 * 68.37605 * 13 12 2 16 16 N 1.65597 * 104.44946 * 180.02562 * 13 12 2 17 17 C 1.46495 * 120.00114 * 64.99944 * 16 13 12 18 18 H 1.09000 * 112.84720 * 16.69234 * 17 16 13 19 19 C 1.53781 * 113.61700 * 245.49447 * 17 16 13 20 20 C 1.53780 * 87.07978 * 270.88372 * 19 17 16 21 21 C 1.53783 * 87.08467 * 334.56689 * 20 19 17 22 22 C 1.52998 * 113.61119 * 270.88656 * 21 20 19 23 23 C 1.52994 * 113.61583 * 139.98262 * 21 20 19 24 24 H 1.08997 * 109.47084 * 300.00348 * 1 2 3 25 25 H 1.09007 * 109.46899 * 59.99996 * 1 2 3 26 26 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47109 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47204 * 300.00065 * 3 2 1 29 29 H 1.09006 * 109.46531 * 60.00060 * 3 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47065 * 180.02562 * 12 2 1 32 32 H 1.09006 * 109.46890 * 299.99671 * 12 2 1 33 33 H 0.97003 * 120.00196 * 244.99875 * 16 13 12 34 34 H 1.08995 * 113.61245 * 25.42900 * 19 17 16 35 35 H 1.09000 * 113.60959 * 156.25198 * 19 17 16 36 36 H 1.08997 * 113.61509 * 89.11240 * 20 19 17 37 37 H 1.09001 * 113.61378 * 219.93630 * 20 19 17 38 38 H 1.09008 * 109.47027 * 157.49907 * 22 21 20 39 39 H 1.09003 * 109.47375 * 277.49228 * 22 21 20 40 40 H 1.08998 * 109.47474 * 37.49651 * 22 21 20 41 41 H 1.09000 * 109.47351 * 322.49968 * 23 21 20 42 42 H 1.09000 * 109.47737 * 82.50295 * 23 21 20 43 43 H 1.08997 * 109.47044 * 202.50409 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6495 -1.5911 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9476 0.8330 2.6034 8 14 2.3156 -1.1246 4.0078 9 1 3.6255 -0.5558 4.4149 10 1 1.3363 -0.9508 5.1106 11 1 2.4747 -2.5708 3.7105 12 6 2.0400 -0.7212 -1.2493 13 16 1.4354 0.1340 -2.7304 14 8 0.0281 -0.0182 -2.8545 15 8 2.0480 1.4102 -2.8543 16 7 2.0530 -0.7406 -3.9937 17 6 1.6233 -2.1250 -4.2055 18 1 0.7071 -2.3706 -3.6686 19 6 2.7474 -3.1559 -4.0094 20 6 3.0698 -2.9714 -5.5017 21 6 1.6038 -2.5444 -5.6849 22 6 0.6581 -3.7106 -5.9789 23 6 1.4231 -1.3727 -6.6519 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7136 1.1645 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6767 -1.7489 -1.2493 33 1 2.6994 -0.3363 -4.5934 34 1 3.5418 -2.8146 -3.3457 35 1 2.3862 -4.1534 -3.7594 36 1 3.7849 -2.1728 -5.6984 37 1 3.3222 -3.9009 -6.0120 38 1 -0.3597 -3.4305 -5.7069 39 1 0.6970 -3.9511 -7.0414 40 1 0.9629 -4.5810 -5.3980 41 1 2.2437 -0.6667 -6.5247 42 1 1.4190 -1.7443 -7.6766 43 1 0.4776 -0.8720 -6.4433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332057853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -85.782806 kcal Electronic energy + Delta-G solvation = -22834.660411 eV Core-core repulsion = 19620.540059 eV Total energy + Delta-G solvation = -3214.120352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89254 -38.12469 -38.08529 -36.89162 -34.12542 -33.62299 -31.31462 -28.39897 -28.10461 -27.69441 -27.24686 -25.78068 -23.27133 -21.38016 -20.32693 -19.55183 -18.75918 -17.86466 -16.97575 -16.89526 -16.64286 -16.17723 -15.73531 -15.32667 -14.92653 -14.81212 -14.53863 -14.42035 -14.14036 -13.83403 -13.51135 -13.13063 -13.04014 -12.99164 -12.88782 -12.82486 -12.75505 -12.58330 -12.49698 -12.30802 -12.18006 -12.13824 -11.94249 -11.57651 -11.56722 -11.39104 -11.16414 -10.91980 -10.61763 -10.41164 -10.16120 -8.02440 -6.21027 -0.59962 1.44571 1.46366 1.54981 1.89296 2.44780 2.85661 3.19881 3.31269 3.48963 3.70204 3.89847 3.96538 4.01961 4.16610 4.28265 4.38266 4.60091 4.68228 4.78002 4.82348 4.86352 4.86787 4.96933 4.98705 5.03369 5.05350 5.08659 5.14924 5.18680 5.26637 5.34438 5.39044 5.49780 5.51115 5.65028 5.68457 5.97142 6.11367 6.15264 6.34523 6.83767 7.47282 8.97501 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.004886 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.804468 B = 5729.527351 C = 6251.838872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.266 1.266 12 C -0.582 4.582 13 S 2.614 3.386 14 O -0.991 6.991 15 O -0.994 6.994 16 N -1.092 6.092 17 C 0.110 3.890 18 H 0.092 0.908 19 C -0.158 4.158 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.139 4.139 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.261 0.739 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.421 0.579 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -9.813 -16.501 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.191 1.191 12 C -0.715 4.715 13 S 2.711 3.289 14 O -0.981 6.981 15 O -0.985 6.985 16 N -0.851 5.851 17 C 0.002 3.998 18 H 0.110 0.890 19 C -0.198 4.198 20 C -0.160 4.160 21 C -0.091 4.091 22 C -0.187 4.187 23 C -0.197 4.197 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.258 0.742 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.142 -8.980 -16.361 18.927 hybrid contribution 0.688 -0.249 1.208 1.412 sum 3.831 -9.230 -15.154 18.152 Atomic orbital electron populations 1.22197 0.97744 1.00495 1.01260 1.17928 0.92333 0.92074 0.90997 1.22211 0.99802 0.98509 1.01270 1.21286 1.31723 1.12134 0.90333 0.91814 1.25685 0.95148 0.95682 1.01694 1.69950 1.37356 1.23620 1.23813 0.85607 0.77860 0.79247 0.79203 1.20428 1.21323 1.19078 1.30450 1.12454 1.13280 1.15288 1.04709 0.74188 0.74113 0.75844 1.93501 1.31827 1.86795 1.85988 1.93505 1.78470 1.40185 1.86313 1.55124 1.60516 1.23847 1.45594 1.22116 0.98092 0.80304 0.99292 0.89005 1.23494 0.98503 0.99648 0.98111 1.23005 0.94929 1.02351 0.95687 1.22207 0.97284 0.96666 0.92913 1.21622 0.98060 0.96224 1.02758 1.21716 1.01399 0.97318 0.99246 0.91155 0.94967 0.94040 0.94139 0.95045 0.91045 0.92964 0.84525 0.84598 0.74236 0.90650 0.87619 0.89830 0.89668 0.92801 0.90740 0.91043 0.92392 0.90965 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 2 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 3 C -0.16 -8.02 7.78 71.98 0.56 -7.46 16 4 C -0.52 -26.72 8.01 25.60 0.21 -26.51 16 5 H 0.06 3.16 7.74 -2.92 -0.02 3.14 16 6 C 0.02 0.91 5.15 84.66 0.44 1.35 16 7 N -0.91 -50.45 9.35 21.45 0.20 -50.24 16 8 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 C -0.58 -21.85 5.01 71.98 0.36 -21.49 16 13 S 2.61 94.82 4.47 -56.49 -0.25 94.57 16 14 O -0.99 -41.50 15.18 -127.65 -1.94 -43.44 16 15 O -0.99 -41.52 15.70 -127.65 -2.00 -43.52 16 16 N -1.09 -28.10 5.02 -167.20 -0.84 -28.94 16 17 C 0.11 2.43 3.85 45.52 0.18 2.61 16 18 H 0.09 2.24 7.70 -2.39 -0.02 2.22 16 19 C -0.16 -2.71 7.53 31.12 0.23 -2.48 16 20 C -0.12 -1.77 7.03 31.12 0.22 -1.55 16 21 C -0.09 -1.54 1.36 -51.66 -0.07 -1.61 16 22 C -0.13 -1.88 9.07 71.98 0.65 -1.22 16 23 C -0.14 -2.50 8.60 71.98 0.62 -1.88 16 24 H 0.07 3.83 6.08 -2.39 -0.01 3.82 16 25 H 0.03 1.54 5.46 -2.38 -0.01 1.52 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 29 H 0.07 3.91 6.06 -2.38 -0.01 3.89 16 30 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 32 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 33 H 0.42 9.15 7.51 -96.74 -0.73 8.43 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.51 7.66 -2.39 -0.02 1.49 16 36 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 37 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.88 7.34 -2.39 -0.02 0.86 16 41 H 0.06 0.99 6.77 -2.39 -0.02 0.98 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -66.18 337.70 1.38 -64.80 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.26 Total: 27.10 kcal Atomic # 6 Polarization: -68.27 SS G_CDS: 3.92 Total: -64.35 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.64 Total: -79.18 kcal Atomic # 8 Polarization: -83.02 SS G_CDS: -3.94 Total: -86.96 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 94.82 SS G_CDS: -0.25 Total: 94.57 kcal Total: -66.18 1.38 -64.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332057853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.983 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds