Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38548 * 119.84924 * 2 1 4 4 C 1.38055 * 120.39017 * 180.02562 * 3 2 1 5 5 C 1.38704 * 120.08432 * 0.02562 * 4 3 2 6 6 O 1.35657 * 120.14957 * 179.97438 * 5 4 3 7 7 C 1.40136 * 119.70148 * 359.97438 * 5 4 3 8 8 C 1.47535 * 120.19496 * 179.97438 * 7 5 4 9 9 O 1.21588 * 120.00355 * 54.70207 * 8 7 5 10 10 N 1.34777 * 119.99860 * 234.70472 * 8 7 5 11 11 C 1.46932 * 120.63282 * 355.55797 * 10 8 7 12 12 C 1.53626 * 108.54227 * 126.36617 * 11 10 8 13 13 C 1.53038 * 109.24018 * 54.85896 * 12 11 10 14 14 C 1.50700 * 109.44586 * 178.49479 * 13 12 11 15 15 H 1.07997 * 120.00237 * 120.06511 * 14 13 12 16 16 C 1.37880 * 120.00304 * 300.05870 * 14 13 12 17 17 N 1.31516 * 119.99671 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00376 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47187 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47299 * 120.00037 * 18 16 14 21 21 H 1.48503 * 109.47062 * 240.00363 * 18 16 14 22 22 C 1.53037 * 109.53796 * 298.50659 * 13 12 11 23 23 C 1.46927 * 120.63268 * 175.83622 * 10 8 7 24 24 C 1.37785 * 119.85127 * 180.25476 * 2 1 3 25 25 H 1.08995 * 109.47750 * 89.99741 * 1 2 3 26 26 H 1.09001 * 109.47716 * 210.00403 * 1 2 3 27 27 H 1.09009 * 109.47204 * 329.99821 * 1 2 3 28 28 H 1.07996 * 119.80612 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.96205 * 179.97438 * 4 3 2 30 30 H 0.96702 * 114.00086 * 269.97170 * 6 5 4 31 31 H 1.08997 * 109.58531 * 246.20213 * 11 10 8 32 32 H 1.08999 * 109.58450 * 6.62582 * 11 10 8 33 33 H 1.09000 * 109.63542 * 294.86769 * 12 11 10 34 34 H 1.09000 * 109.42847 * 174.72506 * 12 11 10 35 35 H 1.09005 * 109.46291 * 58.52799 * 13 12 11 36 36 H 0.97000 * 119.99708 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.49856 * 301.41430 * 22 13 12 38 38 H 1.09000 * 109.49961 * 181.31825 * 22 13 12 39 39 H 1.09008 * 109.58267 * 353.37183 * 23 10 8 40 40 H 1.08994 * 109.58748 * 113.65249 * 23 10 8 41 41 H 1.08003 * 120.04382 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.2017 0.0000 4 6 3.5770 1.2147 -0.0005 5 6 4.2836 0.0211 -0.0016 6 8 5.6401 0.0324 -0.0027 7 6 3.5898 -1.1965 -0.0016 8 6 4.3304 -2.4724 -0.0033 9 8 5.1629 -2.6934 0.8549 10 7 4.0843 -3.3932 -0.9563 11 6 3.0150 -3.1831 -1.9419 12 6 3.6108 -3.3376 -3.3495 13 6 4.3056 -4.6970 -3.4566 14 6 4.8599 -4.8689 -4.8474 15 1 5.9201 -5.0154 -4.9919 16 6 4.0135 -4.8393 -5.9354 17 7 2.7225 -4.6604 -5.7595 18 14 4.7004 -5.0531 -7.6593 19 1 6.1721 -5.2376 -7.5864 20 1 4.0833 -6.2456 -8.2937 21 1 4.3919 -3.8466 -8.4682 22 6 5.4474 -4.7697 -2.4402 23 6 4.8761 -4.6289 -1.0257 24 6 2.1927 -1.1950 -0.0053 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6509 2.1337 0.0004 29 1 4.1075 2.1554 -0.0009 30 1 6.0327 0.0356 -0.8864 31 1 2.2290 -3.9231 -1.7915 32 1 2.6031 -2.1806 -1.8260 33 1 4.3354 -2.5435 -3.5298 34 1 2.8128 -3.2776 -4.0896 35 1 3.5861 -5.4898 -3.2518 36 1 2.1271 -4.6392 -6.5250 37 1 6.1546 -3.9621 -2.6290 38 1 5.9566 -5.7289 -2.5330 39 1 5.6926 -4.5806 -0.3051 40 1 4.2394 -5.4841 -0.7997 41 1 1.6510 -2.1294 -0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334232447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = -61.042561 kcal Electronic energy + Delta-G solvation = -23432.293629 eV Core-core repulsion = 20083.802142 eV Total energy + Delta-G solvation = -3348.491486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.50804 -38.78153 -37.06325 -36.62309 -33.56871 -32.13197 -31.75261 -30.67584 -29.88976 -26.54390 -26.24081 -24.16711 -22.61836 -22.52825 -21.59978 -19.89777 -18.78014 -17.95072 -17.03038 -16.26911 -16.06383 -15.84742 -15.34043 -14.57504 -14.41404 -14.32421 -13.93658 -13.63773 -13.44943 -13.10304 -12.81615 -12.77135 -12.63853 -12.28150 -11.94219 -11.83701 -11.71315 -11.50037 -11.25219 -10.98966 -10.68706 -10.64085 -10.41940 -10.13969 -9.70348 -9.47931 -9.21386 -9.10264 -8.79843 -8.50801 -8.41300 -8.01179 -6.06855 -4.12896 0.96057 1.17540 2.94450 3.24393 3.33156 3.35683 3.37322 3.62665 4.17317 4.37842 4.64160 4.73732 4.78773 5.15042 5.17616 5.22989 5.42987 5.50358 5.58439 5.60909 5.76303 5.83050 5.91121 5.92538 6.03712 6.09884 6.13501 6.24989 6.27689 6.40844 6.43030 6.62392 6.67598 6.86148 7.00407 7.10526 7.24711 7.62892 7.65477 7.87620 7.88358 8.00294 8.36467 8.52929 8.90827 9.52456 10.98677 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.004715 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.397088 B = 5937.294199 C = 6523.374295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.090 4.090 4 C -0.147 4.147 5 C 0.145 3.855 6 O -0.487 6.487 7 C -0.138 4.138 8 C 0.556 3.444 9 O -0.540 6.540 10 N -0.594 5.594 11 C 0.095 3.905 12 C -0.121 4.121 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.123 4.123 23 C 0.112 3.888 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.392 0.608 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 10.157 8.952 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.109 4.109 4 C -0.166 4.166 5 C 0.099 3.901 6 O -0.297 6.297 7 C -0.142 4.142 8 C 0.343 3.657 9 O -0.418 6.418 10 N -0.326 5.326 11 C -0.027 4.027 12 C -0.160 4.160 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.010 4.010 24 C -0.092 4.092 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.249 0.751 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.144 10.016 9.894 14.676 hybrid contribution 0.367 -0.098 -1.639 1.682 sum -3.777 9.918 8.256 13.446 Atomic orbital electron populations 1.20784 0.90579 1.02843 1.02740 1.19834 0.96500 0.92664 1.01149 1.21005 0.93462 0.97738 0.98663 1.21332 0.94493 0.97536 1.03205 1.18371 0.83234 0.90742 0.97737 1.84787 1.15357 1.96194 1.33368 1.20341 0.94305 0.93843 1.05670 1.18107 0.82570 0.83267 0.81759 1.90759 1.34795 1.78843 1.37386 1.48202 1.35194 1.19563 1.29652 1.22359 0.89032 1.00802 0.90514 1.22080 1.01720 0.99420 0.92763 1.18651 0.92227 0.93288 0.92921 1.21244 0.93902 1.48825 0.90960 0.92638 1.24957 0.94851 0.95087 0.99055 1.69845 1.02553 1.50350 1.30348 0.86567 0.79269 0.77701 0.84658 1.19822 1.21027 1.21064 1.22005 0.99961 1.00860 0.93245 1.21724 0.95102 0.84850 0.99297 1.21098 0.91973 0.98504 0.97585 0.90754 0.91366 0.91495 0.85389 0.84941 0.75120 0.91860 0.90801 0.94388 0.87789 0.95427 0.93030 0.92982 0.92032 0.90310 0.92076 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 36.00 0.36 -0.58 16 2 C -0.10 -1.14 5.87 -104.68 -0.61 -1.75 16 3 C -0.09 -0.95 9.68 -39.53 -0.38 -1.34 16 4 C -0.15 -1.74 9.98 -39.48 -0.39 -2.13 16 5 C 0.15 2.14 6.71 -38.70 -0.26 1.89 16 6 O -0.49 -7.27 12.72 -21.21 -0.27 -7.54 16 7 C -0.14 -2.21 4.89 -104.85 -0.51 -2.72 16 8 C 0.56 10.45 6.84 -12.47 -0.09 10.36 16 9 O -0.54 -11.81 16.21 2.75 0.04 -11.77 16 10 N -0.59 -10.91 2.97 -173.72 -0.52 -11.43 16 11 C 0.09 1.70 5.57 -3.48 -0.02 1.68 16 12 C -0.12 -2.63 5.17 -26.39 -0.14 -2.77 16 13 C 0.05 1.11 2.06 -91.73 -0.19 0.93 16 14 C -0.51 -13.42 8.56 -34.44 -0.29 -13.71 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -24.06 11.30 55.43 0.63 -23.43 16 18 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 23 C 0.11 2.08 6.42 -3.71 -0.02 2.05 16 24 C -0.07 -0.98 7.06 -39.20 -0.28 -1.26 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.45 8.08 -51.92 -0.42 0.03 16 28 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.39 4.30 9.06 45.56 0.41 4.71 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.19 4.73 -51.93 -0.25 0.94 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.46 7.03 -51.92 -0.36 1.10 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.13 1.66 7.38 -52.48 -0.39 1.28 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -31.16 333.02 -8.26 -39.43 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.08 Total: 4.64 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.07 Total: -10.47 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.11 Total: -34.86 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.23 Total: -19.30 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.16 -8.26 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334232447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.613 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds