Wall clock time and date at job start Tue Mar 31 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38548 * 119.84924 * 2 1 4 4 C 1.38055 * 120.39017 * 180.02562 * 3 2 1 5 5 C 1.38704 * 120.08432 * 0.02562 * 4 3 2 6 6 O 1.35657 * 120.14957 * 179.97438 * 5 4 3 7 7 C 1.40136 * 119.70148 * 359.97438 * 5 4 3 8 8 C 1.47535 * 120.19496 * 179.97438 * 7 5 4 9 9 O 1.21588 * 120.00355 * 54.70207 * 8 7 5 10 10 N 1.34777 * 119.99860 * 234.70472 * 8 7 5 11 11 C 1.46932 * 120.63282 * 355.55797 * 10 8 7 12 12 C 1.53626 * 108.54227 * 126.36617 * 11 10 8 13 13 C 1.53038 * 109.24018 * 54.85896 * 12 11 10 14 14 C 1.50700 * 109.44586 * 178.49479 * 13 12 11 15 15 H 1.07997 * 120.00237 * 120.06511 * 14 13 12 16 16 C 1.37880 * 120.00304 * 300.05870 * 14 13 12 17 17 N 1.31516 * 119.99671 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00376 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47187 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47299 * 120.00037 * 18 16 14 21 21 H 1.48503 * 109.47062 * 240.00363 * 18 16 14 22 22 C 1.53037 * 109.53796 * 298.50659 * 13 12 11 23 23 C 1.46927 * 120.63268 * 175.83622 * 10 8 7 24 24 C 1.37785 * 119.85127 * 180.25476 * 2 1 3 25 25 H 1.08995 * 109.47750 * 89.99741 * 1 2 3 26 26 H 1.09001 * 109.47716 * 210.00403 * 1 2 3 27 27 H 1.09009 * 109.47204 * 329.99821 * 1 2 3 28 28 H 1.07996 * 119.80612 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.96205 * 179.97438 * 4 3 2 30 30 H 0.96702 * 114.00086 * 269.97170 * 6 5 4 31 31 H 1.08997 * 109.58531 * 246.20213 * 11 10 8 32 32 H 1.08999 * 109.58450 * 6.62582 * 11 10 8 33 33 H 1.09000 * 109.63542 * 294.86769 * 12 11 10 34 34 H 1.09000 * 109.42847 * 174.72506 * 12 11 10 35 35 H 1.09005 * 109.46291 * 58.52799 * 13 12 11 36 36 H 0.97000 * 119.99708 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.49856 * 301.41430 * 22 13 12 38 38 H 1.09000 * 109.49961 * 181.31825 * 22 13 12 39 39 H 1.09008 * 109.58267 * 353.37183 * 23 10 8 40 40 H 1.08994 * 109.58748 * 113.65249 * 23 10 8 41 41 H 1.08003 * 120.04382 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.2017 0.0000 4 6 3.5770 1.2147 -0.0005 5 6 4.2836 0.0211 -0.0016 6 8 5.6401 0.0324 -0.0027 7 6 3.5898 -1.1965 -0.0016 8 6 4.3304 -2.4724 -0.0033 9 8 5.1629 -2.6934 0.8549 10 7 4.0843 -3.3932 -0.9563 11 6 3.0150 -3.1831 -1.9419 12 6 3.6108 -3.3376 -3.3495 13 6 4.3056 -4.6970 -3.4566 14 6 4.8599 -4.8689 -4.8474 15 1 5.9201 -5.0154 -4.9919 16 6 4.0135 -4.8393 -5.9354 17 7 2.7225 -4.6604 -5.7595 18 14 4.7004 -5.0531 -7.6593 19 1 6.1721 -5.2376 -7.5864 20 1 4.0833 -6.2456 -8.2937 21 1 4.3919 -3.8466 -8.4682 22 6 5.4474 -4.7697 -2.4402 23 6 4.8761 -4.6289 -1.0257 24 6 2.1927 -1.1950 -0.0053 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6509 2.1337 0.0004 29 1 4.1075 2.1554 -0.0009 30 1 6.0327 0.0356 -0.8864 31 1 2.2290 -3.9231 -1.7915 32 1 2.6031 -2.1806 -1.8260 33 1 4.3354 -2.5435 -3.5298 34 1 2.8128 -3.2776 -4.0896 35 1 3.5861 -5.4898 -3.2518 36 1 2.1271 -4.6392 -6.5250 37 1 6.1546 -3.9621 -2.6290 38 1 5.9566 -5.7289 -2.5330 39 1 5.6926 -4.5806 -0.3051 40 1 4.2394 -5.4841 -0.7997 41 1 1.6510 -2.1294 -0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334232447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:15 Heat of formation + Delta-G solvation = -80.232905 kcal Electronic energy + Delta-G solvation = -23433.125784 eV Core-core repulsion = 20083.802142 eV Total energy + Delta-G solvation = -3349.323642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.74924 -40.05653 -38.38892 -37.94730 -35.36750 -33.54844 -32.69939 -32.20807 -31.38270 -28.14249 -27.24894 -25.61002 -24.12757 -23.93753 -22.77364 -21.41070 -20.15956 -19.15951 -18.61306 -17.99398 -17.28306 -17.07041 -16.56143 -16.42432 -15.82325 -15.41778 -14.97989 -14.87043 -14.76720 -14.53799 -14.43295 -14.22315 -13.88360 -13.56736 -13.33891 -13.11216 -12.83977 -12.81297 -12.58471 -12.45282 -12.40761 -12.16733 -11.99305 -11.72336 -11.50259 -11.03922 -11.01250 -10.76214 -10.41510 -9.94876 -9.61857 -9.42502 -8.08423 -6.21396 -0.06330 0.23353 1.40185 1.43829 1.53547 1.57018 2.01454 2.44006 2.57633 3.18296 3.19590 3.41819 3.84476 3.95858 4.08299 4.20546 4.27799 4.33787 4.34307 4.44226 4.51809 4.62100 4.67815 4.77720 4.83151 4.92388 4.93184 4.94511 5.14957 5.16642 5.20448 5.29297 5.29904 5.40060 5.51632 5.54915 5.64044 5.82184 5.96795 6.10712 6.37256 6.41001 6.69751 6.87793 7.06650 7.46420 8.95404 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.004715 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.397088 B = 5937.294199 C = 6523.374295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.079 4.079 4 C -0.145 4.145 5 C 0.124 3.876 6 O -0.505 6.505 7 C -0.170 4.170 8 C 0.557 3.443 9 O -0.578 6.578 10 N -0.595 5.595 11 C 0.109 3.891 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.047 0.953 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.948 3.052 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.280 1.280 22 C -0.112 4.112 23 C 0.116 3.884 24 C -0.083 4.083 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.166 0.834 29 H 0.156 0.844 30 H 0.403 0.597 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.005 0.995 36 H 0.262 0.738 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 11.922 9.032 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.097 4.097 4 C -0.163 4.163 5 C 0.078 3.922 6 O -0.318 6.318 7 C -0.173 4.173 8 C 0.347 3.653 9 O -0.459 6.459 10 N -0.326 5.326 11 C -0.013 4.013 12 C -0.149 4.149 13 C 0.027 3.973 14 C -0.572 4.572 15 H 0.065 0.935 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.774 3.226 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.205 1.205 22 C -0.150 4.150 23 C -0.006 4.006 24 C -0.102 4.102 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.262 0.738 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.527 11.781 9.962 16.389 hybrid contribution 0.768 -0.607 -1.665 1.931 sum -4.759 11.175 8.297 14.709 Atomic orbital electron populations 1.20864 0.88260 1.04179 1.03571 1.20216 0.98132 0.92030 0.99453 1.21486 0.93045 0.99028 0.96166 1.21616 0.95239 0.97257 1.02161 1.18695 0.83184 0.91470 0.98855 1.84744 1.16035 1.96291 1.34697 1.20289 0.95351 0.92669 1.09016 1.18582 0.81991 0.83932 0.80831 1.90721 1.36667 1.79701 1.38800 1.48225 1.35162 1.19541 1.29699 1.22213 0.88640 1.02412 0.88006 1.21842 1.00522 0.97948 0.94638 1.18618 0.92681 0.93407 0.92614 1.21552 0.93690 1.49273 0.92689 0.93478 1.25611 0.95190 0.94875 1.02286 1.69947 1.03291 1.50573 1.31261 0.85660 0.78563 0.77699 0.80636 1.19753 1.20670 1.20549 1.21849 0.98759 1.00773 0.93623 1.21645 0.95466 0.85666 0.97846 1.21228 0.90984 0.99864 0.98109 0.90015 0.91041 0.89287 0.81610 0.82616 0.73820 0.91133 0.88590 0.95534 0.90061 0.97680 0.92874 0.93930 0.91532 0.90338 0.90846 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.00 71.23 0.71 -0.75 16 2 C -0.10 -1.91 5.87 -19.90 -0.12 -2.02 16 3 C -0.08 -1.37 9.68 22.30 0.22 -1.15 16 4 C -0.14 -3.04 9.98 22.34 0.22 -2.82 16 5 C 0.12 3.55 6.71 22.84 0.15 3.71 16 6 O -0.51 -15.13 12.72 -87.30 -1.11 -16.24 16 7 C -0.17 -5.35 4.89 -20.01 -0.10 -5.45 16 8 C 0.56 21.15 6.84 86.70 0.59 21.74 16 9 O -0.58 -25.84 16.21 -1.57 -0.03 -25.87 16 10 N -0.60 -21.95 2.97 -821.80 -2.44 -24.39 16 11 C 0.11 3.87 5.57 86.51 0.48 4.35 16 12 C -0.11 -4.88 5.17 30.82 0.16 -4.72 16 13 C 0.05 2.17 2.06 -11.52 -0.02 2.14 16 14 C -0.53 -28.51 8.56 25.60 0.22 -28.29 16 15 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 16 C 0.02 1.03 5.30 84.66 0.45 1.48 16 17 N -0.91 -49.51 11.30 21.45 0.24 -49.27 16 18 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 C -0.11 -4.63 5.30 30.67 0.16 -4.46 16 23 C 0.12 4.33 6.42 86.36 0.55 4.88 16 24 C -0.08 -2.11 7.06 22.52 0.16 -1.96 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.90 8.08 -2.39 -0.02 0.89 16 27 H 0.09 0.79 8.08 -2.38 -0.02 0.77 16 28 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.40 9.03 9.06 -74.06 -0.67 8.36 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.10 3.01 4.73 -2.39 -0.01 3.00 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 3.99 6.03 -2.39 -0.01 3.97 16 35 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.08 2.96 7.03 -2.38 -0.02 2.94 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.14 3.23 7.38 -2.91 -0.02 3.21 16 Total: -1.00 -67.93 333.02 2.91 -65.02 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.37 Total: 19.77 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.84 Total: -13.32 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -2.20 Total: -73.66 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.14 Total: -42.11 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.93 2.91 -65.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334232447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.215 kcal (2) G-P(sol) polarization free energy of solvation -67.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds