Wall clock time and date at job start Tue Mar 31 2020 06:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37723 * 119.95344 * 2 1 4 4 C 1.39716 * 119.90910 * 179.75329 * 3 2 1 5 5 C 1.47610 * 120.08638 * 180.22604 * 4 3 2 6 6 O 1.21581 * 120.00013 * 41.88029 * 5 4 3 7 7 N 1.34775 * 119.99899 * 221.88026 * 5 4 3 8 8 C 1.46926 * 120.62934 * 185.57227 * 7 5 4 9 9 C 1.52759 * 109.00509 * 233.58161 * 8 7 5 10 10 C 1.53040 * 109.38458 * 305.58656 * 9 8 7 11 11 C 1.50699 * 109.45036 * 181.25689 * 10 9 8 12 12 H 1.07998 * 120.00236 * 239.94528 * 11 10 9 13 13 C 1.37876 * 120.00045 * 59.93941 * 11 10 9 14 14 N 1.31520 * 120.00043 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99977 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47384 * 59.99751 * 15 13 11 17 17 H 1.48506 * 109.47080 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47008 * 299.99403 * 15 13 11 19 19 C 1.53039 * 109.53762 * 61.24383 * 10 9 8 20 20 C 1.46927 * 120.62857 * 5.84590 * 7 5 4 21 21 C 1.39755 * 119.82423 * 0.49381 * 4 3 2 22 22 C 1.37678 * 119.90812 * 359.75392 * 21 4 3 23 23 C 1.38969 * 119.95785 * 180.26789 * 2 1 3 24 24 O 1.35717 * 119.91168 * 0.02562 * 23 2 1 25 25 H 1.08992 * 109.47532 * 269.73133 * 1 2 3 26 26 H 1.09000 * 109.46874 * 149.73079 * 1 2 3 27 27 H 1.08998 * 109.47190 * 29.73389 * 1 2 3 28 28 H 1.07997 * 120.04517 * 359.97438 * 3 2 1 29 29 H 1.08992 * 109.58685 * 353.41683 * 8 7 5 30 30 H 1.09002 * 109.58411 * 113.84137 * 8 7 5 31 31 H 1.09008 * 109.56039 * 185.55506 * 9 8 7 32 32 H 1.08992 * 109.35927 * 65.49992 * 9 8 7 33 33 H 1.09005 * 109.46218 * 301.22002 * 10 9 8 34 34 H 0.97003 * 119.99603 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.49804 * 178.68493 * 19 10 9 36 36 H 1.08993 * 109.50126 * 58.58269 * 19 10 9 37 37 H 1.09001 * 109.58823 * 246.15378 * 20 7 5 38 38 H 1.08998 * 109.58977 * 6.44688 * 20 7 5 39 39 H 1.07998 * 120.04029 * 179.77976 * 21 4 3 40 40 H 1.08000 * 119.95478 * 180.02562 * 22 21 4 41 41 H 0.96701 * 113.99374 * 90.00088 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1933 0.0000 4 6 3.5918 1.1922 0.0052 5 6 4.3328 2.4688 0.0103 6 8 3.9573 3.3869 0.7134 7 7 5.4255 2.6168 -0.7646 8 6 6.2433 3.8346 -0.6807 9 6 6.3935 4.4302 -2.0794 10 6 6.9472 3.3649 -3.0284 11 6 7.1251 3.9598 -4.4015 12 1 6.5943 3.5416 -5.2441 13 6 7.9652 5.0379 -4.5823 14 7 8.6111 5.5476 -3.5562 15 14 8.1851 5.7757 -6.2843 16 1 6.8733 6.2544 -6.7896 17 1 9.1339 6.9158 -6.2108 18 1 8.7235 4.7429 -7.2057 19 6 5.9701 2.1896 -3.1045 20 6 5.8182 1.5660 -1.7135 21 6 4.2860 -0.0208 0.0000 22 6 3.5911 -1.2093 -0.0052 23 6 2.2010 -1.2040 -0.0056 24 8 1.5197 -2.3778 -0.0116 25 1 -0.3634 -0.0048 1.0275 26 1 -0.3633 -0.8876 -0.5180 27 1 -0.3633 0.8923 -0.5097 28 1 1.6547 2.1285 -0.0004 29 1 5.7556 4.5580 -0.0274 30 1 7.2280 3.5868 -0.2844 31 1 7.0788 5.2773 -2.0436 32 1 5.4194 4.7645 -2.4362 33 1 7.9101 3.0133 -2.6576 34 1 9.2019 6.3064 -3.6834 35 1 6.3538 1.4418 -3.7985 36 1 4.9999 2.5449 -3.4517 37 1 6.7676 1.1296 -1.4031 38 1 5.0513 0.7919 -1.7395 39 1 5.3659 -0.0257 0.0004 40 1 4.1268 -2.1471 -0.0088 41 1 1.3227 -2.7136 -0.8968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334270089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:48 Heat of formation + Delta-G solvation = -60.800147 kcal Electronic energy + Delta-G solvation = -22975.543251 eV Core-core repulsion = 19627.062277 eV Total energy + Delta-G solvation = -3348.480974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54083 -39.24814 -36.99099 -36.49290 -33.72838 -32.89818 -31.16585 -30.69645 -29.74534 -27.06373 -26.28593 -23.94454 -22.91411 -22.05887 -21.87793 -19.96886 -18.61329 -18.53473 -17.00225 -16.38522 -16.16950 -15.83960 -15.38993 -14.58898 -14.56412 -14.36003 -13.85940 -13.52009 -13.46518 -13.14091 -12.86194 -12.80124 -12.60032 -12.43646 -12.15089 -12.11358 -11.90690 -11.56424 -11.17018 -10.93528 -10.72149 -10.60641 -10.44687 -10.10464 -9.64311 -9.59514 -9.23028 -9.00292 -8.95378 -8.62272 -8.38872 -8.03284 -6.03680 -4.10563 0.76894 1.15911 2.86476 3.28837 3.32075 3.34246 3.36323 3.64890 3.96367 4.39681 4.60647 4.63563 4.69574 5.04918 5.17626 5.26009 5.36532 5.42098 5.45016 5.50169 5.71959 5.74482 5.84669 5.92894 5.98737 6.07758 6.21905 6.22629 6.29237 6.38855 6.43851 6.54780 6.59975 6.81392 6.93607 7.16873 7.31279 7.38540 7.67177 7.84153 7.90979 8.04142 8.37906 8.48072 8.92467 9.54641 11.01734 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.003650 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.010763 B = 7669.416301 C = 7971.503007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C -0.054 4.054 4 C -0.122 4.122 5 C 0.552 3.448 6 O -0.549 6.549 7 N -0.592 5.592 8 C 0.109 3.891 9 C -0.123 4.123 10 C 0.049 3.951 11 C -0.515 4.515 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.124 4.124 20 C 0.098 3.902 21 C -0.077 4.077 22 C -0.148 4.148 23 C 0.118 3.882 24 O -0.496 6.496 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 -13.715 5.536 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.126 4.126 5 C 0.340 3.660 6 O -0.428 6.428 7 N -0.323 5.323 8 C -0.012 4.012 9 C -0.162 4.162 10 C 0.030 3.970 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.162 4.162 20 C -0.025 4.025 21 C -0.095 4.095 22 C -0.166 4.166 23 C 0.073 3.927 24 O -0.306 6.306 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.090 -13.013 6.546 18.308 hybrid contribution 0.258 0.327 -1.514 1.570 sum -10.831 -12.686 5.032 17.424 Atomic orbital electron populations 1.20647 0.90274 1.02720 1.02677 1.20135 0.96959 0.92195 1.02655 1.20976 0.92418 0.97853 0.96084 1.20042 0.94258 0.93703 1.04554 1.18243 0.80410 0.86942 0.80375 1.90751 1.67499 1.41593 1.42954 1.48172 1.26103 1.20275 1.37786 1.21846 0.93224 0.85298 1.00875 1.21943 1.00950 1.02122 0.91173 1.18638 0.93023 0.90193 0.95113 1.21144 1.25999 1.14584 0.93557 0.92775 1.24962 0.95519 0.96758 0.96679 1.69833 1.28937 1.24531 1.29617 0.86674 0.77950 0.78714 0.84745 1.20334 1.21289 1.20318 1.22018 1.01207 0.99801 0.93195 1.22171 0.99803 0.89810 0.90691 1.21298 1.00473 0.90836 0.96932 1.21317 0.93309 0.98778 1.03236 1.18460 0.89730 0.84783 0.99736 1.84768 1.76242 1.36208 1.33395 0.90948 0.91398 0.91358 0.84768 0.90476 0.92093 0.87719 0.94320 0.95439 0.92866 0.92012 0.92871 0.91746 0.90407 0.84599 0.84823 0.75392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.79 36.01 0.35 -0.57 16 2 C -0.12 -1.34 5.89 -104.54 -0.62 -1.95 16 3 C -0.05 -0.73 9.29 -39.22 -0.36 -1.09 16 4 C -0.12 -1.80 5.08 -104.95 -0.53 -2.33 16 5 C 0.55 10.02 7.29 -12.44 -0.09 9.93 16 6 O -0.55 -11.67 16.36 5.29 0.09 -11.58 16 7 N -0.59 -10.71 2.98 -174.23 -0.52 -11.23 16 8 C 0.11 2.17 6.41 -3.93 -0.03 2.14 16 9 C -0.12 -2.84 5.14 -26.83 -0.14 -2.98 16 10 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 11 C -0.51 -13.60 8.56 -34.44 -0.29 -13.89 16 12 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -24.60 11.30 55.43 0.63 -23.98 16 15 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 20 C 0.10 1.56 4.93 -3.71 -0.02 1.54 16 21 C -0.08 -0.94 7.38 -39.22 -0.29 -1.23 16 22 C -0.15 -1.56 9.97 -39.50 -0.39 -1.96 16 23 C 0.12 1.26 6.68 -39.02 -0.26 0.99 16 24 O -0.50 -4.34 12.52 -18.86 -0.24 -4.57 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.49 7.52 -51.93 -0.39 0.10 16 27 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 2.68 6.03 -51.92 -0.31 2.37 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 38 H 0.08 1.07 4.81 -51.93 -0.25 0.82 16 39 H 0.14 1.52 6.72 -52.49 -0.35 1.16 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.39 1.59 9.06 45.56 0.41 2.00 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -31.08 331.47 -8.19 -39.27 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.02 Total: 2.69 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.10 Total: -11.39 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.11 Total: -35.20 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.15 Total: -16.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.08 -8.19 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334270089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.531 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds