Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47549 * 2 1 4 4 O 1.21292 * 119.99708 * 95.02482 * 3 2 1 5 5 N 1.34775 * 120.00184 * 275.01776 * 3 2 1 6 6 C 1.39933 * 120.00123 * 184.31841 * 5 3 2 7 7 C 1.39290 * 119.94574 * 144.79098 * 6 5 3 8 8 C 1.38489 * 120.42618 * 180.02562 * 7 6 5 9 9 C 1.37684 * 120.32382 * 0.27273 * 8 7 6 10 10 C 1.40742 * 119.88082 * 359.49366 * 9 8 7 11 11 C 1.41413 * 120.20614 * 180.27072 * 10 9 8 12 12 H 1.08001 * 119.99965 * 214.92012 * 11 10 9 13 13 C 1.39930 * 119.99808 * 34.92796 * 11 10 9 14 14 N 1.30823 * 120.00181 * 355.55978 * 13 11 10 15 15 Si 1.86799 * 119.99841 * 175.56326 * 13 11 10 16 16 H 1.48501 * 109.47222 * 89.99822 * 15 13 11 17 17 H 1.48496 * 109.47268 * 209.99786 * 15 13 11 18 18 H 1.48496 * 109.47159 * 329.99847 * 15 13 11 19 19 C 1.38244 * 119.94541 * 324.80810 * 6 5 3 20 20 C 1.53091 * 109.48071 * 120.02016 * 2 1 3 21 21 C 1.53169 * 109.16552 * 177.60683 * 20 2 1 22 22 C 1.53173 * 109.03724 * 303.02006 * 21 20 2 23 23 C 1.53099 * 109.16226 * 56.97938 * 22 21 20 24 24 O 1.42898 * 109.41426 * 302.39091 * 23 22 21 25 25 H 1.09001 * 109.46986 * 60.00641 * 1 2 3 26 26 H 1.09005 * 109.46423 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47626 * 299.99948 * 1 2 3 28 28 H 0.97000 * 119.99367 * 4.31534 * 5 3 2 29 29 H 1.07993 * 119.78667 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.83546 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.05841 * 179.72663 * 9 8 7 32 32 H 0.97003 * 120.00105 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.16194 * 359.95601 * 19 6 5 34 34 H 1.09001 * 109.52369 * 297.51519 * 20 2 1 35 35 H 1.09003 * 109.52200 * 57.69825 * 20 2 1 36 36 H 1.09004 * 109.54463 * 62.88504 * 21 20 2 37 37 H 1.09009 * 109.54694 * 183.06324 * 21 20 2 38 38 H 1.09001 * 109.52834 * 176.88681 * 22 21 20 39 39 H 1.08997 * 109.52290 * 297.01305 * 22 21 20 40 40 H 1.08999 * 109.47708 * 62.37773 * 23 22 21 41 41 H 1.09003 * 109.48077 * 182.40857 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 2.3214 1.9618 1.0464 5 7 2.1609 2.0902 -1.1627 6 6 2.7120 3.3764 -1.1724 7 6 3.5046 3.7852 -2.2424 8 6 4.0554 5.0557 -2.2620 9 6 3.8299 5.9273 -1.2202 10 6 3.0271 5.5298 -0.1347 11 6 2.7863 6.4214 0.9362 12 1 2.6980 6.0435 1.9441 13 6 2.6623 7.7933 0.6899 14 7 2.8551 8.2614 -0.5164 15 14 2.2216 8.9563 2.0837 16 1 3.4646 9.4385 2.7378 17 1 1.4661 10.1143 1.5420 18 1 1.3839 8.2407 3.0793 19 6 2.4693 4.2391 -0.1198 20 6 2.0406 -0.7221 1.2497 21 6 3.5711 -0.7704 1.2125 22 6 4.0180 -1.4595 -0.0804 23 6 3.4310 -0.7089 -1.2787 24 8 2.0069 -0.6741 -1.1663 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8714 1.6803 -1.9928 29 1 3.6907 3.1071 -3.0620 30 1 4.6688 5.3626 -3.0962 31 1 4.2652 6.9155 -1.2378 32 1 2.7695 9.2124 -0.6870 33 1 1.8546 3.9231 0.7101 34 1 1.7146 -0.1842 2.1399 35 1 1.6445 -1.7374 1.2711 36 1 3.9687 0.2441 1.2411 37 1 3.9393 -1.3307 2.0720 38 1 5.1062 -1.4491 -0.1415 39 1 3.6628 -2.4900 -0.0854 40 1 3.8194 0.3094 -1.2954 41 1 3.7106 -1.2199 -2.2001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334565245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -70.065461 kcal Electronic energy + Delta-G solvation = -23552.048491 eV Core-core repulsion = 20203.165743 eV Total energy + Delta-G solvation = -3348.882748 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85848 -38.43841 -36.97404 -34.60816 -33.63464 -32.93515 -32.81861 -29.78743 -28.35183 -27.75454 -25.27234 -24.48402 -23.62066 -21.69308 -21.01214 -20.34524 -19.07427 -17.70610 -17.33312 -16.20902 -15.63987 -15.30261 -15.00948 -14.66077 -14.60521 -14.34013 -14.03859 -13.98586 -13.09765 -12.92517 -12.79645 -12.44010 -12.35214 -12.26368 -12.02713 -11.83382 -11.64402 -11.21899 -11.15868 -11.02405 -10.95671 -10.81454 -10.56359 -10.39495 -10.15347 -9.80019 -9.59351 -9.33969 -8.99236 -8.75843 -7.37135 -6.90299 -6.55181 -4.35730 2.54265 2.84716 3.12436 3.14799 3.20838 3.30541 3.39957 3.75040 4.02197 4.56353 4.72767 4.75920 4.83339 4.84852 4.98230 5.17685 5.41289 5.45354 5.56225 5.57846 5.68169 5.72247 5.80169 5.84364 5.97706 6.01610 6.08902 6.23736 6.30383 6.36843 6.76119 6.91126 7.03830 7.07860 7.11853 7.33949 7.57485 7.74310 7.97637 8.14316 8.17766 8.28780 8.65638 8.73546 8.99009 9.00642 10.34293 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.004376 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.016807 B = 6397.331773 C = 6920.405924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.102 3.898 3 C 0.488 3.512 4 O -0.511 6.511 5 N -0.659 5.659 6 C 0.138 3.862 7 C -0.249 4.249 8 C -0.100 4.100 9 C -0.159 4.159 10 C 0.113 3.887 11 C -0.461 4.461 12 H 0.075 0.925 13 C 0.071 3.929 14 N -0.814 5.814 15 Si 0.914 3.086 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.198 4.198 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.154 4.154 23 C 0.049 3.951 24 O -0.367 6.367 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.402 0.598 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.277 0.723 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -15.372 -1.175 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 C 0.273 3.727 4 O -0.386 6.386 5 N -0.304 5.304 6 C 0.046 3.954 7 C -0.270 4.270 8 C -0.119 4.119 9 C -0.179 4.179 10 C 0.110 3.890 11 C -0.492 4.492 12 H 0.094 0.906 13 C -0.144 4.144 14 N -0.441 5.441 15 Si 0.739 3.261 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.219 4.219 20 C -0.164 4.164 21 C -0.167 4.167 22 C -0.191 4.191 23 C -0.028 4.028 24 O -0.287 6.287 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.236 0.764 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.360 -14.873 -0.662 14.950 hybrid contribution -0.144 0.489 0.156 0.533 sum -1.504 -14.384 -0.506 14.471 Atomic orbital electron populations 1.21755 0.90437 1.03583 1.03614 1.21824 0.96358 0.88319 0.87574 1.21138 0.78754 0.88456 0.84362 1.90738 1.47799 1.68959 1.31100 1.43494 1.61198 1.15988 1.09673 1.17517 0.97464 0.82794 0.97616 1.20135 1.08309 0.98288 1.00249 1.20546 0.99729 0.93520 0.98078 1.21637 1.00819 1.00060 0.95375 1.17574 0.88180 0.90351 0.92920 1.19516 1.43703 0.90953 0.95036 0.90634 1.25846 0.93200 0.98920 0.96407 1.69759 1.38437 1.15113 1.20810 0.86215 0.79278 0.79307 0.81286 1.19527 1.20328 1.18738 1.21265 1.05990 0.95027 0.99620 1.21954 0.96479 1.00592 0.97397 1.21658 0.95479 1.02150 0.97386 1.22164 1.01143 1.00154 0.95675 1.22757 0.80672 1.00754 0.98578 1.87951 1.21569 1.76842 1.42290 0.91250 0.90674 0.90212 0.76356 0.89271 0.88964 0.85346 0.91245 0.87017 0.89606 0.90584 0.90631 0.91322 0.90881 0.91186 0.92147 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.83 37.16 0.33 -1.24 16 2 C 0.10 1.39 1.03 -91.72 -0.09 1.30 16 3 C 0.49 8.74 4.65 -10.98 -0.05 8.69 16 4 O -0.51 -11.12 12.57 5.55 0.07 -11.05 16 5 N -0.66 -12.09 4.37 -9.91 -0.04 -12.13 16 6 C 0.14 3.13 6.29 -83.77 -0.53 2.60 16 7 C -0.25 -5.47 9.97 -39.10 -0.39 -5.86 16 8 C -0.10 -2.33 10.02 -39.69 -0.40 -2.73 16 9 C -0.16 -4.20 8.67 -38.84 -0.34 -4.54 16 10 C 0.11 3.12 5.55 -106.85 -0.59 2.52 16 11 C -0.46 -12.81 9.04 -37.74 -0.34 -13.15 16 12 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 13 C 0.07 1.84 5.42 -17.35 -0.09 1.75 16 14 N -0.81 -21.55 10.61 55.55 0.59 -20.96 16 15 Si 0.91 19.57 29.56 -169.99 -5.03 14.55 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 19 C -0.20 -5.14 8.43 -38.68 -0.33 -5.47 16 20 C -0.13 -1.58 4.58 -26.60 -0.12 -1.70 16 21 C -0.13 -1.63 5.75 -26.55 -0.15 -1.79 16 22 C -0.15 -1.67 6.14 -26.59 -0.16 -1.83 16 23 C 0.05 0.58 6.49 37.21 0.24 0.83 16 24 O -0.37 -4.74 9.63 -35.23 -0.34 -5.08 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.40 6.25 8.33 -40.82 -0.34 5.91 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.13 3.51 6.15 -52.49 -0.32 3.19 16 32 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 33 H 0.11 3.00 6.23 -52.49 -0.33 2.67 16 34 H 0.09 1.14 7.78 -51.93 -0.40 0.74 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.20 6.72 -51.93 -0.35 0.85 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.86 6.51 -51.93 -0.34 0.52 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -30.02 328.04 -8.68 -38.70 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.86 Total: 11.66 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.02 Total: -20.62 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.55 Total: -33.09 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.27 Total: -16.13 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.02 -8.68 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334565245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.366 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds