Wall clock time and date at job start Tue Mar 31 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47549 * 2 1 4 4 O 1.21292 * 119.99708 * 95.02482 * 3 2 1 5 5 N 1.34775 * 120.00184 * 275.01776 * 3 2 1 6 6 C 1.39933 * 120.00123 * 184.31841 * 5 3 2 7 7 C 1.39290 * 119.94574 * 144.79098 * 6 5 3 8 8 C 1.38489 * 120.42618 * 180.02562 * 7 6 5 9 9 C 1.37684 * 120.32382 * 0.27273 * 8 7 6 10 10 C 1.40742 * 119.88082 * 359.49366 * 9 8 7 11 11 C 1.41413 * 120.20614 * 180.27072 * 10 9 8 12 12 H 1.08001 * 119.99965 * 214.92012 * 11 10 9 13 13 C 1.39930 * 119.99808 * 34.92796 * 11 10 9 14 14 N 1.30823 * 120.00181 * 355.55978 * 13 11 10 15 15 Si 1.86799 * 119.99841 * 175.56326 * 13 11 10 16 16 H 1.48501 * 109.47222 * 89.99822 * 15 13 11 17 17 H 1.48496 * 109.47268 * 209.99786 * 15 13 11 18 18 H 1.48496 * 109.47159 * 329.99847 * 15 13 11 19 19 C 1.38244 * 119.94541 * 324.80810 * 6 5 3 20 20 C 1.53091 * 109.48071 * 120.02016 * 2 1 3 21 21 C 1.53169 * 109.16552 * 177.60683 * 20 2 1 22 22 C 1.53173 * 109.03724 * 303.02006 * 21 20 2 23 23 C 1.53099 * 109.16226 * 56.97938 * 22 21 20 24 24 O 1.42898 * 109.41426 * 302.39091 * 23 22 21 25 25 H 1.09001 * 109.46986 * 60.00641 * 1 2 3 26 26 H 1.09005 * 109.46423 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47626 * 299.99948 * 1 2 3 28 28 H 0.97000 * 119.99367 * 4.31534 * 5 3 2 29 29 H 1.07993 * 119.78667 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.83546 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.05841 * 179.72663 * 9 8 7 32 32 H 0.97003 * 120.00105 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.16194 * 359.95601 * 19 6 5 34 34 H 1.09001 * 109.52369 * 297.51519 * 20 2 1 35 35 H 1.09003 * 109.52200 * 57.69825 * 20 2 1 36 36 H 1.09004 * 109.54463 * 62.88504 * 21 20 2 37 37 H 1.09009 * 109.54694 * 183.06324 * 21 20 2 38 38 H 1.09001 * 109.52834 * 176.88681 * 22 21 20 39 39 H 1.08997 * 109.52290 * 297.01305 * 22 21 20 40 40 H 1.08999 * 109.47708 * 62.37773 * 23 22 21 41 41 H 1.09003 * 109.48077 * 182.40857 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 2.3214 1.9618 1.0464 5 7 2.1609 2.0902 -1.1627 6 6 2.7120 3.3764 -1.1724 7 6 3.5046 3.7852 -2.2424 8 6 4.0554 5.0557 -2.2620 9 6 3.8299 5.9273 -1.2202 10 6 3.0271 5.5298 -0.1347 11 6 2.7863 6.4214 0.9362 12 1 2.6980 6.0435 1.9441 13 6 2.6623 7.7933 0.6899 14 7 2.8551 8.2614 -0.5164 15 14 2.2216 8.9563 2.0837 16 1 3.4646 9.4385 2.7378 17 1 1.4661 10.1143 1.5420 18 1 1.3839 8.2407 3.0793 19 6 2.4693 4.2391 -0.1198 20 6 2.0406 -0.7221 1.2497 21 6 3.5711 -0.7704 1.2125 22 6 4.0180 -1.4595 -0.0804 23 6 3.4310 -0.7089 -1.2787 24 8 2.0069 -0.6741 -1.1663 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8714 1.6803 -1.9928 29 1 3.6907 3.1071 -3.0620 30 1 4.6688 5.3626 -3.0962 31 1 4.2652 6.9155 -1.2378 32 1 2.7695 9.2124 -0.6870 33 1 1.8546 3.9231 0.7101 34 1 1.7146 -0.1842 2.1399 35 1 1.6445 -1.7374 1.2711 36 1 3.9687 0.2441 1.2411 37 1 3.9393 -1.3307 2.0720 38 1 5.1062 -1.4491 -0.1415 39 1 3.6628 -2.4900 -0.0854 40 1 3.8194 0.3094 -1.2954 41 1 3.7106 -1.2199 -2.2001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334565245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:55 Heat of formation + Delta-G solvation = -88.057628 kcal Electronic energy + Delta-G solvation = -23552.828690 eV Core-core repulsion = 20203.165743 eV Total energy + Delta-G solvation = -3349.662947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15378 -39.92360 -38.64524 -36.30722 -35.00333 -34.39093 -33.94204 -31.75451 -30.08237 -28.76727 -27.26968 -25.56678 -24.87179 -23.06689 -22.75274 -21.92696 -20.47314 -19.46596 -18.68347 -17.50992 -17.25212 -16.91241 -16.47170 -16.27080 -15.89987 -15.72126 -15.32163 -15.07799 -14.78793 -14.69027 -14.05455 -13.81587 -13.58877 -13.39054 -13.32512 -13.13745 -12.97321 -12.94217 -12.85801 -12.82244 -12.19198 -12.18000 -11.98496 -11.79049 -11.57170 -11.48645 -11.20280 -10.89634 -10.73484 -10.26852 -9.34816 -8.77954 -8.49667 -6.43684 0.81390 0.96183 1.35180 1.43279 1.50347 1.66697 2.06628 2.21969 2.62560 2.77624 3.43968 3.63256 3.75857 3.77713 3.89186 3.97815 4.23846 4.44627 4.44776 4.53573 4.57217 4.64262 4.71198 4.80984 4.87399 4.96982 5.00574 5.03496 5.07998 5.09852 5.11696 5.17312 5.18585 5.32682 5.34456 5.70715 5.81759 5.97165 6.04597 6.13873 6.33207 6.57583 6.68882 6.94040 6.98860 7.22276 8.40290 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.004376 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.016807 B = 6397.331773 C = 6920.405924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.111 3.889 3 C 0.485 3.515 4 O -0.555 6.555 5 N -0.652 5.652 6 C 0.145 3.855 7 C -0.237 4.237 8 C -0.097 4.097 9 C -0.184 4.184 10 C 0.082 3.918 11 C -0.504 4.504 12 H 0.060 0.940 13 C 0.032 3.968 14 N -0.839 5.839 15 Si 0.986 3.014 16 H -0.260 1.260 17 H -0.262 1.262 18 H -0.267 1.267 19 C -0.223 4.223 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.148 4.148 23 C 0.043 3.957 24 O -0.361 6.361 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.418 0.582 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.285 0.715 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -17.567 -2.455 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 C 0.272 3.728 4 O -0.432 6.432 5 N -0.297 5.297 6 C 0.052 3.948 7 C -0.258 4.258 8 C -0.116 4.116 9 C -0.204 4.204 10 C 0.079 3.921 11 C -0.535 4.535 12 H 0.078 0.922 13 C -0.180 4.180 14 N -0.466 5.466 15 Si 0.807 3.193 16 H -0.184 1.184 17 H -0.187 1.187 18 H -0.191 1.191 19 C -0.244 4.244 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.186 4.186 23 C -0.034 4.034 24 O -0.280 6.280 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.256 0.744 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.052 0.948 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.705 -17.108 -1.984 17.306 hybrid contribution 0.011 1.035 0.475 1.139 sum -1.694 -16.073 -1.508 16.232 Atomic orbital electron populations 1.21820 0.88558 1.05534 1.03472 1.21825 0.97598 0.85090 0.88678 1.22140 0.77262 0.90120 0.83253 1.90727 1.49395 1.70398 1.32688 1.43447 1.60930 1.14423 1.10917 1.17606 0.96651 0.84005 0.96530 1.20549 1.06339 0.98269 1.00649 1.20903 0.99339 0.93483 0.97853 1.21570 1.01984 1.00295 0.96595 1.17897 0.89135 0.91254 0.93815 1.19671 1.46570 0.92630 0.94642 0.92168 1.26669 0.92428 0.99753 0.99161 1.69815 1.38488 1.15947 1.22374 0.85151 0.79308 0.77074 0.77795 1.18417 1.18664 1.19124 1.21197 1.07115 0.95591 1.00524 1.22006 0.96434 1.01853 0.96074 1.21666 0.95640 1.00211 0.99469 1.22154 1.01792 1.00803 0.93812 1.22935 0.80066 0.99819 1.00534 1.87973 1.22214 1.76089 1.41726 0.91140 0.87619 0.90754 0.74404 0.85110 0.85755 0.86954 0.90399 0.89153 0.91140 0.87337 0.94854 0.89713 0.89944 0.88837 0.94836 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.83 71.98 0.64 -2.21 16 2 C 0.11 2.85 1.03 -11.51 -0.01 2.84 16 3 C 0.48 17.51 4.65 87.66 0.41 17.91 16 4 O -0.55 -25.38 12.57 -3.07 -0.04 -25.42 16 5 N -0.65 -23.59 4.37 -303.65 -1.33 -24.91 16 6 C 0.15 6.64 6.29 38.10 0.24 6.88 16 7 C -0.24 -10.07 9.97 22.58 0.23 -9.84 16 8 C -0.10 -4.48 10.02 22.20 0.22 -4.25 16 9 C -0.18 -10.08 8.67 22.75 0.20 -9.88 16 10 C 0.08 4.76 5.55 -21.31 -0.12 4.65 16 11 C -0.50 -29.79 9.04 23.46 0.21 -29.57 16 12 H 0.06 3.57 7.85 -2.91 -0.02 3.55 16 13 C 0.03 1.72 5.42 85.25 0.46 2.18 16 14 N -0.84 -45.72 10.61 21.82 0.23 -45.49 16 15 Si 0.99 41.21 29.56 68.60 2.03 43.23 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 C -0.22 -12.19 8.43 22.85 0.19 -12.00 16 20 C -0.13 -2.94 4.58 30.68 0.14 -2.80 16 21 C -0.13 -3.20 5.75 30.71 0.18 -3.02 16 22 C -0.15 -2.80 6.14 30.68 0.19 -2.61 16 23 C 0.04 0.90 6.49 72.02 0.47 1.37 16 24 O -0.36 -8.21 9.63 -148.98 -1.44 -9.64 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 28 H 0.42 12.22 8.33 -92.71 -0.77 11.45 16 29 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 30 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 31 H 0.11 6.41 6.15 -2.91 -0.02 6.40 16 32 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 33 H 0.09 5.23 6.23 -2.91 -0.02 5.21 16 34 H 0.07 1.87 7.78 -2.39 -0.02 1.85 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.08 6.72 -2.38 -0.02 1.06 16 37 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.03 0.89 6.51 -2.39 -0.02 0.88 16 41 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -69.81 328.04 3.36 -66.45 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.27 Total: 36.16 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 3.64 Total: -40.37 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.09 Total: -70.41 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.47 Total: -35.06 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -69.81 3.36 -66.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334565245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.608 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds