Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.48327 * 2 1 4 4 O 1.21290 * 119.99981 * 264.97394 * 3 2 1 5 5 N 1.34776 * 119.99902 * 84.97477 * 3 2 1 6 6 C 1.39941 * 119.99929 * 174.88836 * 5 3 2 7 7 C 1.39290 * 119.94647 * 325.55522 * 6 5 3 8 8 C 1.38492 * 120.43105 * 179.76088 * 7 6 5 9 9 C 1.37684 * 120.31770 * 0.51780 * 8 7 6 10 10 C 1.40733 * 119.88408 * 359.74047 * 9 8 7 11 11 C 1.41414 * 120.20966 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99841 * 25.13519 * 11 10 9 13 13 C 1.39934 * 120.00243 * 205.12789 * 11 10 9 14 14 N 1.30825 * 119.99584 * 16.79651 * 13 11 10 15 15 Si 1.86798 * 119.99964 * 196.79062 * 13 11 10 16 16 H 1.48503 * 109.47077 * 90.00215 * 15 13 11 17 17 H 1.48502 * 109.47109 * 210.00503 * 15 13 11 18 18 H 1.48500 * 109.47395 * 330.00119 * 15 13 11 19 19 C 1.38237 * 119.95064 * 145.83005 * 6 5 3 20 20 C 1.53094 * 109.47796 * 239.97196 * 2 1 3 21 21 C 1.53184 * 109.15839 * 182.40295 * 20 2 1 22 22 C 1.53176 * 109.03785 * 56.98060 * 21 20 2 23 23 C 1.53089 * 109.16371 * 303.01750 * 22 21 20 24 24 O 1.42902 * 109.48353 * 120.01805 * 2 1 3 25 25 H 1.08997 * 109.47626 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46933 * 300.02837 * 1 2 3 27 27 H 1.09008 * 109.46381 * 60.02229 * 1 2 3 28 28 H 0.96993 * 120.00642 * 354.88845 * 5 3 2 29 29 H 1.08007 * 119.78542 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.83879 * 180.23553 * 8 7 6 31 31 H 1.07995 * 120.05379 * 179.76594 * 9 8 7 32 32 H 0.97002 * 119.99755 * 180.02562 * 14 13 11 33 33 H 1.08004 * 120.15763 * 359.96014 * 19 6 5 34 34 H 1.08999 * 109.52228 * 62.49859 * 20 2 1 35 35 H 1.09000 * 109.57741 * 302.33240 * 20 2 1 36 36 H 1.09004 * 109.54427 * 297.11587 * 21 20 2 37 37 H 1.08997 * 109.53953 * 176.85277 * 21 20 2 38 38 H 1.08998 * 109.52197 * 183.11420 * 22 21 20 39 39 H 1.08999 * 109.52181 * 62.92821 * 22 21 20 40 40 H 1.09000 * 109.47838 * 177.58990 * 23 22 21 41 41 H 1.08999 * 109.48253 * 297.61130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3217 1.9617 -1.0464 5 7 2.1610 2.0900 1.1627 6 6 2.7276 3.3696 1.1746 7 6 3.7507 3.6853 0.2837 8 6 4.3152 4.9499 0.2834 9 6 3.8779 5.9065 1.1719 10 6 2.8486 5.6003 2.0815 11 6 2.3937 6.5776 2.9967 12 1 2.5080 7.6269 2.7674 13 6 1.7954 6.1855 4.1993 14 7 1.9440 4.9608 4.6349 15 14 0.7847 7.4105 5.1828 16 1 -0.6329 7.3473 4.7449 17 1 0.8720 7.0776 6.6274 18 1 1.3116 8.7806 4.9579 19 6 2.2749 4.3165 2.0742 20 6 2.0405 -0.7223 -1.2496 21 6 3.5711 -0.7707 -1.2122 22 6 4.0178 -1.4599 0.0808 23 6 3.4309 -0.7091 1.2790 24 8 2.0066 -0.6740 1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5143 0.8897 27 1 -0.3632 0.5135 -0.8903 28 1 1.8607 1.6850 1.9913 29 1 4.1032 2.9402 -0.4143 30 1 5.1054 5.1855 -0.4141 31 1 4.3237 6.8901 1.1705 32 1 1.5290 4.6888 5.4684 33 1 1.4842 4.0715 2.7680 34 1 1.7147 -0.1843 -2.1399 35 1 1.6445 -1.7375 -1.2720 36 1 3.9689 0.2437 -1.2409 37 1 3.9391 -1.3324 -2.0708 38 1 5.1060 -1.4494 0.1420 39 1 3.6616 -2.4900 0.0863 40 1 3.7102 -1.2201 2.2004 41 1 3.8195 0.3091 1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334565246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = -73.211520 kcal Electronic energy + Delta-G solvation = -23646.328993 eV Core-core repulsion = 20297.309821 eV Total energy + Delta-G solvation = -3349.019172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82267 -38.38660 -36.99513 -34.48940 -33.63716 -33.11710 -32.86617 -29.55918 -28.53934 -27.75692 -25.26787 -24.45736 -23.60818 -21.63061 -21.20434 -20.14443 -19.20086 -17.53691 -17.31764 -16.20870 -15.81488 -15.15150 -15.03099 -14.74310 -14.53939 -14.37831 -14.00492 -13.96737 -13.11213 -12.86313 -12.75520 -12.41774 -12.39974 -12.28361 -12.02805 -11.94238 -11.62657 -11.26921 -11.15762 -11.07887 -10.86453 -10.71353 -10.62091 -10.48859 -10.01363 -9.76107 -9.73707 -9.37142 -9.13418 -8.77276 -7.39613 -7.02315 -6.70106 -4.38236 2.51232 2.83839 3.06898 3.10339 3.16879 3.29045 3.49299 3.79492 3.92879 4.58710 4.62911 4.77711 4.85088 4.88618 5.03389 5.20898 5.44086 5.50093 5.58875 5.62250 5.66831 5.74760 5.83865 5.87045 5.97855 6.02807 6.11647 6.24001 6.30584 6.61274 6.69300 6.85816 7.01467 7.04768 7.09704 7.25289 7.60343 7.69008 7.91037 8.01911 8.14337 8.32377 8.54452 8.73847 8.88051 8.94841 10.18331 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.004563 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.301113 B = 6134.258042 C = 6656.948611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.101 3.899 3 C 0.490 3.510 4 O -0.521 6.521 5 N -0.656 5.656 6 C 0.144 3.856 7 C -0.228 4.228 8 C -0.086 4.086 9 C -0.228 4.228 10 C 0.121 3.879 11 C -0.464 4.464 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.798 5.798 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.181 4.181 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.154 4.154 23 C 0.048 3.952 24 O -0.366 6.366 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.406 0.594 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.279 0.721 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -12.338 -4.451 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 C 0.275 3.725 4 O -0.396 6.396 5 N -0.300 5.300 6 C 0.052 3.948 7 C -0.249 4.249 8 C -0.105 4.105 9 C -0.248 4.248 10 C 0.118 3.882 11 C -0.493 4.493 12 H 0.097 0.903 13 C -0.140 4.140 14 N -0.424 5.424 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.202 4.202 20 C -0.164 4.164 21 C -0.166 4.166 22 C -0.191 4.191 23 C -0.028 4.028 24 O -0.285 6.285 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.241 0.759 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.024 -12.221 -4.858 13.191 hybrid contribution -0.339 0.397 0.838 0.987 sum -1.363 -11.824 -4.020 12.563 Atomic orbital electron populations 1.21753 0.90488 1.03579 1.03596 1.21810 0.96403 0.88377 0.87581 1.21120 0.78579 0.88524 0.84249 1.90694 1.48678 1.69082 1.31187 1.43575 1.60135 1.16613 1.09713 1.17641 0.94623 0.83530 0.98960 1.20251 1.02038 0.97797 1.04798 1.20410 0.98658 0.93506 0.97889 1.21034 1.02048 0.98883 1.02865 1.17366 0.88652 0.91803 0.90412 1.19553 1.34266 0.94470 1.01060 0.90343 1.25875 0.94607 0.95830 0.97709 1.69811 1.34604 1.18498 1.19507 0.86320 0.80605 0.81450 0.78381 1.19336 1.20355 1.18632 1.21089 1.03354 0.93691 1.02091 1.21954 0.96453 1.00606 0.97372 1.21657 0.95496 1.02010 0.97421 1.22171 1.01137 1.00185 0.95655 1.22765 0.80640 1.00818 0.98584 1.87971 1.21591 1.76758 1.42169 0.90680 0.91133 0.90348 0.75874 0.88338 0.89086 0.88863 0.90993 0.85967 0.89730 0.90590 0.90746 0.91390 0.90871 0.91178 0.88366 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.83 37.16 0.33 -1.32 16 2 C 0.10 1.43 1.03 -91.72 -0.09 1.34 16 3 C 0.49 8.94 4.55 -10.99 -0.05 8.89 16 4 O -0.52 -11.06 12.87 5.55 0.07 -10.99 16 5 N -0.66 -12.87 4.36 -9.91 -0.04 -12.92 16 6 C 0.14 3.41 6.25 -83.76 -0.52 2.88 16 7 C -0.23 -5.44 8.66 -39.10 -0.34 -5.77 16 8 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 9 C -0.23 -5.71 9.79 -38.84 -0.38 -6.09 16 10 C 0.12 3.23 5.57 -106.85 -0.59 2.63 16 11 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 12 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 13 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 14 N -0.80 -20.15 10.94 55.55 0.61 -19.54 16 15 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 16 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 C -0.18 -4.65 8.60 -38.69 -0.33 -4.98 16 20 C -0.13 -1.58 4.58 -26.59 -0.12 -1.70 16 21 C -0.13 -1.61 5.75 -26.55 -0.15 -1.76 16 22 C -0.15 -1.73 6.14 -26.59 -0.16 -1.89 16 23 C 0.05 0.63 6.49 37.20 0.24 0.87 16 24 O -0.37 -5.09 9.64 -35.23 -0.34 -5.42 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.41 7.27 8.34 -40.82 -0.34 6.93 16 29 H 0.10 2.31 6.47 -52.48 -0.34 1.97 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 33 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 34 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.14 6.72 -51.93 -0.35 0.80 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.93 6.52 -51.93 -0.34 0.59 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -29.01 328.62 -8.66 -37.68 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -5.87 Total: 12.84 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -3.01 Total: -20.11 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.56 Total: -32.46 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.27 Total: -16.42 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.01 -8.66 -37.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334565246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.534 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds