Wall clock time and date at job start Tue Mar 31 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.48327 * 2 1 4 4 O 1.21290 * 119.99981 * 264.97394 * 3 2 1 5 5 N 1.34776 * 119.99902 * 84.97477 * 3 2 1 6 6 C 1.39941 * 119.99929 * 174.88836 * 5 3 2 7 7 C 1.39290 * 119.94647 * 325.55522 * 6 5 3 8 8 C 1.38492 * 120.43105 * 179.76088 * 7 6 5 9 9 C 1.37684 * 120.31770 * 0.51780 * 8 7 6 10 10 C 1.40733 * 119.88408 * 359.74047 * 9 8 7 11 11 C 1.41414 * 120.20966 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99841 * 25.13519 * 11 10 9 13 13 C 1.39934 * 120.00243 * 205.12789 * 11 10 9 14 14 N 1.30825 * 119.99584 * 16.79651 * 13 11 10 15 15 Si 1.86798 * 119.99964 * 196.79062 * 13 11 10 16 16 H 1.48503 * 109.47077 * 90.00215 * 15 13 11 17 17 H 1.48502 * 109.47109 * 210.00503 * 15 13 11 18 18 H 1.48500 * 109.47395 * 330.00119 * 15 13 11 19 19 C 1.38237 * 119.95064 * 145.83005 * 6 5 3 20 20 C 1.53094 * 109.47796 * 239.97196 * 2 1 3 21 21 C 1.53184 * 109.15839 * 182.40295 * 20 2 1 22 22 C 1.53176 * 109.03785 * 56.98060 * 21 20 2 23 23 C 1.53089 * 109.16371 * 303.01750 * 22 21 20 24 24 O 1.42902 * 109.48353 * 120.01805 * 2 1 3 25 25 H 1.08997 * 109.47626 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46933 * 300.02837 * 1 2 3 27 27 H 1.09008 * 109.46381 * 60.02229 * 1 2 3 28 28 H 0.96993 * 120.00642 * 354.88845 * 5 3 2 29 29 H 1.08007 * 119.78542 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.83879 * 180.23553 * 8 7 6 31 31 H 1.07995 * 120.05379 * 179.76594 * 9 8 7 32 32 H 0.97002 * 119.99755 * 180.02562 * 14 13 11 33 33 H 1.08004 * 120.15763 * 359.96014 * 19 6 5 34 34 H 1.08999 * 109.52228 * 62.49859 * 20 2 1 35 35 H 1.09000 * 109.57741 * 302.33240 * 20 2 1 36 36 H 1.09004 * 109.54427 * 297.11587 * 21 20 2 37 37 H 1.08997 * 109.53953 * 176.85277 * 21 20 2 38 38 H 1.08998 * 109.52197 * 183.11420 * 22 21 20 39 39 H 1.08999 * 109.52181 * 62.92821 * 22 21 20 40 40 H 1.09000 * 109.47838 * 177.58990 * 23 22 21 41 41 H 1.08999 * 109.48253 * 297.61130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3217 1.9617 -1.0464 5 7 2.1610 2.0900 1.1627 6 6 2.7276 3.3696 1.1746 7 6 3.7507 3.6853 0.2837 8 6 4.3152 4.9499 0.2834 9 6 3.8779 5.9065 1.1719 10 6 2.8486 5.6003 2.0815 11 6 2.3937 6.5776 2.9967 12 1 2.5080 7.6269 2.7674 13 6 1.7954 6.1855 4.1993 14 7 1.9440 4.9608 4.6349 15 14 0.7847 7.4105 5.1828 16 1 -0.6329 7.3473 4.7449 17 1 0.8720 7.0776 6.6274 18 1 1.3116 8.7806 4.9579 19 6 2.2749 4.3165 2.0742 20 6 2.0405 -0.7223 -1.2496 21 6 3.5711 -0.7707 -1.2122 22 6 4.0178 -1.4599 0.0808 23 6 3.4309 -0.7091 1.2790 24 8 2.0066 -0.6740 1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5143 0.8897 27 1 -0.3632 0.5135 -0.8903 28 1 1.8607 1.6850 1.9913 29 1 4.1032 2.9402 -0.4143 30 1 5.1054 5.1855 -0.4141 31 1 4.3237 6.8901 1.1705 32 1 1.5290 4.6888 5.4684 33 1 1.4842 4.0715 2.7680 34 1 1.7147 -0.1843 -2.1399 35 1 1.6445 -1.7375 -1.2720 36 1 3.9689 0.2437 -1.2409 37 1 3.9391 -1.3324 -2.0708 38 1 5.1060 -1.4494 0.1420 39 1 3.6616 -2.4900 0.0863 40 1 3.7102 -1.2201 2.2004 41 1 3.8195 0.3091 1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334565246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:57 Heat of formation + Delta-G solvation = -89.624095 kcal Electronic energy + Delta-G solvation = -23647.040696 eV Core-core repulsion = 20297.309821 eV Total energy + Delta-G solvation = -3349.730874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.14901 -39.90519 -38.66050 -36.14816 -35.21221 -34.47291 -33.95342 -31.49637 -30.29958 -28.77998 -27.21252 -25.58210 -24.85923 -23.14309 -22.81372 -21.73668 -20.62209 -19.30048 -18.72519 -17.70363 -17.13215 -16.76518 -16.55233 -16.33831 -15.92597 -15.76279 -15.27739 -15.06416 -14.80725 -14.60414 -14.21581 -13.78455 -13.57855 -13.38780 -13.29794 -13.27186 -12.95808 -12.94169 -12.84988 -12.59386 -12.36146 -12.11107 -11.87656 -11.75625 -11.60041 -11.52970 -11.17393 -10.97180 -10.83626 -10.26330 -9.36581 -8.88971 -8.57036 -6.37998 0.75716 1.01085 1.39451 1.47787 1.52077 1.66872 2.08623 2.21357 2.63513 2.73462 3.44507 3.67367 3.73041 3.77996 3.89258 3.96160 4.23409 4.41371 4.44043 4.53126 4.63662 4.67176 4.70014 4.80960 4.82235 4.87577 4.96768 5.03480 5.06278 5.08775 5.11949 5.15814 5.19206 5.32406 5.33691 5.73698 5.80830 5.94569 6.00900 6.05943 6.30943 6.53369 6.69920 6.91644 6.94745 7.18145 8.32731 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.004563 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.301113 B = 6134.258042 C = 6656.948611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.107 3.893 3 C 0.489 3.511 4 O -0.552 6.552 5 N -0.656 5.656 6 C 0.150 3.850 7 C -0.239 4.239 8 C -0.083 4.083 9 C -0.248 4.248 10 C 0.093 3.907 11 C -0.498 4.498 12 H 0.077 0.923 13 C 0.038 3.962 14 N -0.822 5.822 15 Si 0.982 3.018 16 H -0.263 1.263 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.203 4.203 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.147 4.147 23 C 0.042 3.958 24 O -0.366 6.366 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.413 0.587 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.289 0.711 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 -13.976 -4.225 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 C 0.277 3.723 4 O -0.430 6.430 5 N -0.300 5.300 6 C 0.057 3.943 7 C -0.261 4.261 8 C -0.102 4.102 9 C -0.268 4.268 10 C 0.090 3.910 11 C -0.527 4.527 12 H 0.095 0.905 13 C -0.177 4.177 14 N -0.448 5.448 15 Si 0.803 3.197 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.225 4.225 20 C -0.162 4.162 21 C -0.168 4.168 22 C -0.185 4.185 23 C -0.034 4.034 24 O -0.285 6.285 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.249 0.751 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.137 0.863 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.725 -13.892 -4.636 14.747 hybrid contribution -0.062 0.844 0.735 1.121 sum -1.787 -13.048 -3.901 13.735 Atomic orbital electron populations 1.21824 0.88703 1.05485 1.03406 1.21892 0.97634 0.85333 0.88744 1.22043 0.77204 0.90016 0.83012 1.90668 1.49878 1.70271 1.32175 1.43596 1.60140 1.15419 1.10839 1.17719 0.94037 0.84778 0.97760 1.20414 1.02371 0.98175 1.05094 1.20727 0.98819 0.92987 0.97674 1.21213 1.02380 0.99789 1.03427 1.17766 0.89395 0.92568 0.91220 1.19811 1.36216 0.94441 1.02278 0.90500 1.26714 0.94936 0.97819 0.98218 1.69852 1.34690 1.20051 1.20161 0.85203 0.78641 0.78769 0.77101 1.18824 1.19053 1.18333 1.21028 1.04023 0.94282 1.03175 1.22004 0.96477 1.01805 0.95867 1.21671 0.95557 1.00415 0.99178 1.22148 1.01753 1.00740 0.93810 1.22906 0.80173 0.99697 1.00647 1.87983 1.22186 1.76158 1.42138 0.87694 0.91760 0.90208 0.75059 0.88137 0.86225 0.87963 0.90034 0.87033 0.90534 0.87482 0.94384 0.89293 0.89870 0.88895 0.86254 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.83 71.98 0.64 -2.40 16 2 C 0.11 2.88 1.03 -11.51 -0.01 2.87 16 3 C 0.49 17.99 4.55 87.66 0.40 18.38 16 4 O -0.55 -23.89 12.87 -3.06 -0.04 -23.93 16 5 N -0.66 -26.29 4.36 -303.65 -1.32 -27.61 16 6 C 0.15 7.31 6.25 38.10 0.24 7.55 16 7 C -0.24 -11.68 8.66 22.58 0.20 -11.48 16 8 C -0.08 -3.97 10.02 22.20 0.22 -3.75 16 9 C -0.25 -12.73 9.79 22.75 0.22 -12.50 16 10 C 0.09 5.17 5.57 -21.31 -0.12 5.05 16 11 C -0.50 -27.03 9.05 23.46 0.21 -26.82 16 12 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 13 C 0.04 1.92 5.16 85.25 0.44 2.35 16 14 N -0.82 -42.01 10.94 21.82 0.24 -41.77 16 15 Si 0.98 37.87 29.59 68.60 2.03 39.90 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 17 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 19 C -0.20 -10.85 8.60 22.85 0.20 -10.65 16 20 C -0.12 -2.84 4.58 30.69 0.14 -2.70 16 21 C -0.13 -3.06 5.75 30.71 0.18 -2.89 16 22 C -0.15 -2.94 6.14 30.68 0.19 -2.75 16 23 C 0.04 1.03 6.49 72.01 0.47 1.49 16 24 O -0.37 -9.49 9.64 -148.98 -1.44 -10.92 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.41 15.13 8.34 -92.71 -0.77 14.36 16 29 H 0.10 4.82 6.47 -2.91 -0.02 4.80 16 30 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 33 H 0.11 6.07 6.17 -2.91 -0.02 6.06 16 34 H 0.08 1.89 7.78 -2.39 -0.02 1.87 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.17 6.72 -2.39 -0.02 1.15 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.03 0.93 6.52 -2.39 -0.02 0.91 16 Total: -1.00 -64.12 328.62 3.34 -60.78 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: 0.27 Total: 41.81 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.60 Total: -38.26 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.09 Total: -69.39 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.48 Total: -34.85 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -64.12 3.34 -60.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334565246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.844 kcal (2) G-P(sol) polarization free energy of solvation -64.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds