Wall clock time and date at job start Tue Mar 31 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.48293 * 2 1 4 4 O 1.21283 * 120.00184 * 94.99737 * 3 2 1 5 5 N 1.34777 * 119.99856 * 274.99828 * 3 2 1 6 6 C 1.39239 * 120.00050 * 174.90605 * 5 3 2 7 7 C 1.39484 * 119.83193 * 325.34361 * 6 5 3 8 8 C 1.36378 * 120.16563 * 179.72140 * 7 6 5 9 9 C 1.40871 * 119.82841 * 0.51687 * 8 7 6 10 10 C 1.41154 * 120.16254 * 179.72340 * 9 8 7 11 11 H 1.07999 * 119.99979 * 205.37411 * 10 9 8 12 12 C 1.39902 * 119.99649 * 25.37603 * 10 9 8 13 13 N 1.30866 * 120.00521 * 16.83385 * 12 10 9 14 14 Si 1.86802 * 119.99592 * 196.83312 * 12 10 9 15 15 H 1.48496 * 109.47365 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47386 * 120.00253 * 14 12 10 17 17 H 1.48503 * 109.47131 * 239.99878 * 14 12 10 18 18 C 1.40872 * 119.67157 * 359.75534 * 9 8 7 19 19 C 1.36373 * 119.82857 * 359.97438 * 18 9 8 20 20 C 1.53095 * 109.47824 * 120.02277 * 2 1 3 21 21 C 1.53199 * 109.15073 * 177.59113 * 20 2 1 22 22 C 1.53186 * 109.04110 * 303.02659 * 21 20 2 23 23 C 1.53092 * 109.16176 * 56.98036 * 22 21 20 24 24 O 1.42898 * 109.41568 * 302.38845 * 23 22 21 25 25 H 1.08998 * 109.46602 * 59.99982 * 1 2 3 26 26 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.46933 * 300.00228 * 1 2 3 28 28 H 0.97001 * 120.00115 * 354.90446 * 5 3 2 29 29 H 1.07996 * 119.91601 * 359.97438 * 7 6 5 30 30 H 1.08002 * 120.08295 * 180.29545 * 8 7 6 31 31 H 0.97003 * 120.00272 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.08151 * 179.97438 * 18 9 8 33 33 H 1.07998 * 119.91488 * 180.02562 * 19 18 9 34 34 H 1.09000 * 109.52260 * 297.51071 * 20 2 1 35 35 H 1.09007 * 109.52246 * 57.69515 * 20 2 1 36 36 H 1.09003 * 109.54186 * 183.15917 * 21 20 2 37 37 H 1.08994 * 109.61334 * 62.93556 * 21 20 2 38 38 H 1.09004 * 109.51806 * 297.07360 * 22 21 20 39 39 H 1.09001 * 109.57102 * 176.91940 * 22 21 20 40 40 H 1.08998 * 109.47847 * 182.40889 * 23 22 21 41 41 H 1.08992 * 109.48990 * 62.38150 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3211 1.9619 1.0463 5 7 2.1615 2.0899 -1.1628 6 6 2.5238 3.4343 -1.1559 7 6 2.0801 4.2672 -0.1287 8 6 2.4355 5.5837 -0.1122 9 6 3.2438 6.1043 -1.1418 10 6 3.6110 7.4672 -1.1348 11 1 3.8566 7.9651 -2.0612 12 6 3.6570 8.1730 0.0723 13 7 3.6879 7.5248 1.2087 14 14 3.6741 10.0409 0.0618 15 1 3.6337 10.5285 -1.3402 16 1 2.4897 10.5511 0.7982 17 1 4.9133 10.5283 0.7193 18 6 3.6832 5.2581 -2.1788 19 6 3.3242 3.9425 -2.1788 20 6 2.0405 -0.7222 1.2497 21 6 3.5713 -0.7707 1.2120 22 6 4.0178 -1.4598 -0.0811 23 6 3.4307 -0.7091 -1.2792 24 8 2.0066 -0.6742 -1.1665 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.0019 1.6349 -2.0045 29 1 1.4570 3.8675 0.6576 30 1 2.0952 6.2264 0.6863 31 1 3.7193 8.0142 2.0456 32 1 4.3028 5.6503 -2.9717 33 1 3.6607 3.2924 -2.9729 34 1 1.7146 -0.1842 2.1399 35 1 1.6443 -1.7375 1.2711 36 1 3.9395 -1.3325 2.0705 37 1 3.9703 0.2432 1.2414 38 1 3.6616 -2.4900 -0.0865 39 1 5.1060 -1.4504 -0.1429 40 1 3.7099 -1.2200 -2.2006 41 1 3.8191 0.3092 -1.2962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334572438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:00 Heat of formation + Delta-G solvation = -88.790319 kcal Electronic energy + Delta-G solvation = -23419.287737 eV Core-core repulsion = 20069.593018 eV Total energy + Delta-G solvation = -3349.694719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09850 -39.94418 -38.66855 -36.33930 -34.96928 -34.34556 -33.91158 -31.47760 -30.87786 -28.80961 -27.15509 -25.40610 -24.59178 -23.24023 -22.82089 -21.84449 -20.45614 -19.27755 -18.68059 -18.13127 -17.24677 -17.02167 -16.37397 -15.91071 -15.78718 -15.69618 -15.33667 -15.06023 -14.77785 -14.52524 -14.00852 -13.81561 -13.73434 -13.42925 -13.36292 -13.24487 -13.05900 -12.92888 -12.82362 -12.71165 -12.33440 -12.14529 -11.82097 -11.76167 -11.64884 -11.52788 -11.22588 -10.89332 -10.58155 -10.25556 -9.49482 -8.90440 -8.63461 -6.29815 0.75345 1.10226 1.36776 1.40083 1.53799 1.72382 2.17625 2.20607 2.64205 2.75117 3.50612 3.69557 3.78485 3.79481 3.89763 3.98464 4.25146 4.38619 4.41439 4.45134 4.54333 4.65049 4.72004 4.81855 4.87884 4.92693 4.97458 5.02935 5.07468 5.08732 5.15558 5.17585 5.26656 5.33262 5.40919 5.63464 5.78620 5.98907 6.05180 6.08216 6.30655 6.63829 6.68728 6.90087 6.97209 7.33273 8.31845 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030038 B = 0.003833 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.943367 B = 7303.657473 C = 7476.464691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.110 3.890 3 C 0.480 3.520 4 O -0.566 6.566 5 N -0.638 5.638 6 C 0.004 3.996 7 C -0.097 4.097 8 C -0.179 4.179 9 C 0.074 3.926 10 C -0.493 4.493 11 H 0.083 0.917 12 C 0.030 3.970 13 N -0.830 5.830 14 Si 0.986 3.014 15 H -0.253 1.253 16 H -0.266 1.266 17 H -0.266 1.266 18 C -0.222 4.222 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.148 4.148 23 C 0.042 3.958 24 O -0.363 6.363 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.414 0.586 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.287 0.713 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 -16.386 -3.523 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 C 0.267 3.733 4 O -0.444 6.444 5 N -0.283 5.283 6 C -0.089 4.089 7 C -0.117 4.117 8 C -0.199 4.199 9 C 0.072 3.928 10 C -0.523 4.523 11 H 0.101 0.899 12 C -0.184 4.184 13 N -0.456 5.456 14 Si 0.806 3.194 15 H -0.176 1.176 16 H -0.191 1.191 17 H -0.191 1.191 18 C -0.242 4.242 19 C -0.119 4.119 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.186 4.186 23 C -0.034 4.034 24 O -0.282 6.282 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.092 0.908 28 H 0.252 0.748 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.146 0.854 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.119 -16.094 -2.677 16.610 hybrid contribution 0.358 1.132 0.308 1.227 sum -2.762 -14.962 -2.369 15.398 Atomic orbital electron populations 1.21795 0.88677 1.05371 1.03394 1.21818 0.97509 0.85451 0.88481 1.21997 0.77683 0.90070 0.83502 1.90705 1.50059 1.70802 1.32883 1.43029 1.66999 1.08664 1.09589 1.17293 1.07281 0.83735 1.00583 1.20415 1.00201 0.93473 0.97649 1.20884 1.02592 0.94687 1.01755 1.18008 0.89445 0.93926 0.91430 1.19866 1.42150 0.95503 0.94751 0.89920 1.26869 0.91194 1.06196 0.94129 1.69942 1.35716 1.40258 0.99669 0.85107 0.78824 0.75547 0.79897 1.17589 1.19091 1.19119 1.20831 1.07034 0.93765 1.02599 1.20396 0.97433 0.95725 0.98376 1.22001 0.96384 1.01770 0.96195 1.21666 0.95684 1.00205 0.99430 1.22155 1.01773 1.00786 0.93852 1.22942 0.80108 0.99827 1.00545 1.87971 1.22169 1.76227 1.41800 0.91210 0.87785 0.90800 0.74840 0.89165 0.88454 0.90244 0.87087 0.85142 0.91205 0.87516 0.89832 0.94813 0.88893 0.89954 0.85441 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.83 71.98 0.64 -2.21 16 2 C 0.11 2.86 1.04 -11.51 -0.01 2.84 16 3 C 0.48 17.29 4.54 87.66 0.40 17.69 16 4 O -0.57 -25.78 12.87 -3.04 -0.04 -25.82 16 5 N -0.64 -22.94 4.42 -303.11 -1.34 -24.29 16 6 C 0.00 0.20 6.27 38.57 0.24 0.44 16 7 C -0.10 -5.08 8.57 22.14 0.19 -4.89 16 8 C -0.18 -10.18 8.63 22.48 0.19 -9.99 16 9 C 0.07 4.15 5.57 -21.27 -0.12 4.03 16 10 C -0.49 -27.10 9.04 23.39 0.21 -26.89 16 11 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 12 C 0.03 1.59 5.15 85.24 0.44 2.03 16 13 N -0.83 -45.91 10.94 21.82 0.24 -45.67 16 14 Si 0.99 39.09 29.59 68.60 2.03 41.12 16 15 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 18 C -0.22 -10.89 9.74 22.48 0.22 -10.67 16 19 C -0.10 -4.31 9.89 22.13 0.22 -4.09 16 20 C -0.13 -2.97 4.58 30.69 0.14 -2.83 16 21 C -0.13 -3.24 5.75 30.72 0.18 -3.07 16 22 C -0.15 -2.83 6.14 30.69 0.19 -2.64 16 23 C 0.04 0.89 6.39 72.01 0.46 1.35 16 24 O -0.36 -8.31 9.55 -148.98 -1.42 -9.73 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.41 12.10 8.06 -92.71 -0.75 11.35 16 29 H 0.09 4.78 6.48 -2.91 -0.02 4.76 16 30 H 0.10 5.85 6.18 -2.91 -0.02 5.83 16 31 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 32 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 33 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.07 1.87 7.78 -2.39 -0.02 1.85 16 35 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.03 1.10 6.72 -2.39 -0.02 1.09 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.03 0.89 6.50 -2.39 -0.02 0.88 16 Total: -1.00 -68.44 328.01 3.34 -65.10 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: 0.29 Total: 38.20 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.58 Total: -38.91 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.10 Total: -69.96 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.46 Total: -35.55 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -68.44 3.34 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334572438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.695 kcal (2) G-P(sol) polarization free energy of solvation -68.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds