Wall clock time and date at job start Tue Mar 31 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.48371 * 2 1 4 4 O 1.21275 * 120.00103 * 265.02159 * 3 2 1 5 5 N 1.34782 * 119.99784 * 85.02382 * 3 2 1 6 6 C 1.39232 * 119.99841 * 184.79451 * 5 3 2 7 7 C 1.39479 * 119.83576 * 213.59763 * 6 5 3 8 8 C 1.36380 * 120.17004 * 180.02562 * 7 6 5 9 9 C 1.40868 * 119.82400 * 0.02562 * 8 7 6 10 10 C 1.41160 * 120.15864 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00116 * 333.26803 * 10 9 8 12 12 C 1.39897 * 119.99749 * 153.26522 * 10 9 8 13 13 N 1.30876 * 120.00539 * 330.29610 * 12 10 9 14 14 Si 1.86801 * 120.00075 * 150.29906 * 12 10 9 15 15 H 1.48496 * 109.47282 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47159 * 59.99600 * 14 12 10 17 17 H 1.48504 * 109.46750 * 300.00158 * 14 12 10 18 18 C 1.40868 * 119.67872 * 0.25215 * 9 8 7 19 19 C 1.36370 * 119.82410 * 359.50930 * 18 9 8 20 20 C 1.53097 * 109.48926 * 239.96969 * 2 1 3 21 21 C 1.53180 * 109.15994 * 182.40609 * 20 2 1 22 22 C 1.53180 * 109.03977 * 56.98450 * 21 20 2 23 23 C 1.53087 * 109.15780 * 303.01611 * 22 21 20 24 24 O 1.42902 * 109.48084 * 120.02610 * 2 1 3 25 25 H 1.09007 * 109.47332 * 59.99684 * 1 2 3 26 26 H 1.08994 * 109.47654 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47457 * 300.00325 * 1 2 3 28 28 H 0.97003 * 119.99815 * 4.79196 * 5 3 2 29 29 H 1.07996 * 119.91611 * 359.97438 * 7 6 5 30 30 H 1.07999 * 120.08152 * 179.97438 * 8 7 6 31 31 H 0.97000 * 119.99643 * 353.45874 * 13 12 10 32 32 H 1.07994 * 120.08682 * 179.74661 * 18 9 8 33 33 H 1.08001 * 119.91706 * 180.22938 * 19 18 9 34 34 H 1.08996 * 109.52199 * 302.31302 * 20 2 1 35 35 H 1.09002 * 109.51941 * 62.50601 * 20 2 1 36 36 H 1.08999 * 109.54219 * 297.10846 * 21 20 2 37 37 H 1.09003 * 109.61321 * 176.89305 * 21 20 2 38 38 H 1.08992 * 109.52248 * 183.11399 * 22 21 20 39 39 H 1.08996 * 109.57111 * 62.95245 * 22 21 20 40 40 H 1.09003 * 109.48547 * 297.62250 * 23 22 21 41 41 H 1.09001 * 109.49121 * 177.59766 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3207 1.9620 -1.0463 5 7 2.1619 2.0898 1.1629 6 6 2.5302 3.4325 1.1562 7 6 3.3166 3.9414 2.1897 8 6 3.6809 5.2557 2.1903 9 6 3.2604 6.0997 1.1438 10 6 3.6330 7.4612 1.1376 11 1 3.8445 7.9674 2.0679 12 6 3.7281 8.1549 -0.0735 13 7 4.0514 7.5168 -1.1695 14 14 3.3938 9.9920 -0.1266 15 1 3.5593 10.4853 -1.5174 16 1 4.3502 10.6951 0.7657 17 1 2.0055 10.2558 0.3299 18 6 2.4615 5.5798 0.1066 19 6 2.1093 4.2624 0.1171 20 6 2.0407 -0.7223 -1.2495 21 6 3.5713 -0.7707 -1.2119 22 6 4.0178 -1.4599 0.0812 23 6 3.4306 -0.7091 1.2792 24 8 2.0065 -0.6741 1.1664 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.9983 1.6358 2.0044 29 1 3.6371 3.2933 2.9919 30 1 4.2895 5.6483 2.9915 31 1 4.3172 6.5849 -1.1276 32 1 2.1321 6.2219 -0.6968 33 1 1.4999 3.8614 -0.6793 34 1 1.6445 -1.7375 -1.2709 35 1 1.7151 -0.1843 -2.1398 36 1 3.9689 0.2438 -1.2406 37 1 3.9408 -1.3316 -2.0703 38 1 5.1059 -1.4494 0.1425 39 1 3.6624 -2.4903 0.0873 40 1 3.8191 0.3092 1.2961 41 1 3.7098 -1.2198 2.2008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334572439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:03 Heat of formation + Delta-G solvation = -78.296674 kcal Electronic energy + Delta-G solvation = -23460.902751 eV Core-core repulsion = 20111.663071 eV Total energy + Delta-G solvation = -3349.239681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85556 -38.51967 -37.16859 -34.81539 -33.72046 -32.93787 -32.81150 -29.68619 -28.82523 -27.87531 -25.27215 -24.36650 -23.24968 -21.68170 -21.38097 -20.41802 -19.10901 -17.93927 -17.46450 -16.61717 -16.15502 -15.20345 -14.83558 -14.59791 -14.48010 -14.18462 -14.04418 -14.00551 -13.37561 -12.83985 -12.69044 -12.45363 -12.42916 -12.34164 -12.11416 -12.01637 -11.80531 -11.43743 -11.17815 -11.06316 -11.01096 -10.86203 -10.58061 -10.40671 -10.04078 -9.91547 -9.68346 -9.25496 -8.97625 -8.70501 -7.76158 -7.30241 -7.08316 -4.37528 2.45645 2.89403 3.03530 3.16468 3.32638 3.37768 3.41848 3.76793 4.02046 4.53820 4.56019 4.73511 4.81636 4.82943 5.00169 5.16187 5.38718 5.42231 5.48661 5.54743 5.56302 5.70421 5.77185 5.82060 5.95514 5.99681 6.01270 6.07029 6.23010 6.28929 6.64358 6.78394 6.90641 6.98099 7.11743 7.36926 7.48551 7.73750 7.77497 7.81348 8.15121 8.20723 8.28395 8.65232 8.79070 8.89866 10.01771 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029717 B = 0.003863 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.986931 B = 7246.637822 C = 7398.726727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.102 3.898 3 C 0.481 3.519 4 O -0.525 6.525 5 N -0.642 5.642 6 C -0.022 4.022 7 C -0.092 4.092 8 C -0.218 4.218 9 C 0.095 3.905 10 C -0.524 4.524 11 H 0.077 0.923 12 C 0.041 3.959 13 N -0.785 5.785 14 Si 1.062 2.938 15 H -0.274 1.274 16 H -0.276 1.276 17 H -0.274 1.274 18 C -0.209 4.209 19 C -0.065 4.065 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.154 4.154 23 C 0.049 3.951 24 O -0.368 6.368 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.398 0.602 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.300 0.700 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 -14.550 2.536 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 C 0.266 3.734 4 O -0.401 6.401 5 N -0.285 5.285 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.238 4.238 9 C 0.091 3.909 10 C -0.551 4.551 11 H 0.095 0.905 12 C -0.182 4.182 13 N -0.407 5.407 14 Si 0.885 3.115 15 H -0.199 1.199 16 H -0.201 1.201 17 H -0.199 1.199 18 C -0.229 4.229 19 C -0.085 4.085 20 C -0.164 4.164 21 C -0.166 4.166 22 C -0.191 4.191 23 C -0.028 4.028 24 O -0.288 6.288 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.317 -12.994 0.831 13.436 hybrid contribution 0.367 -1.542 1.353 2.084 sum -2.950 -14.536 2.184 14.992 Atomic orbital electron populations 1.21735 0.90531 1.03493 1.03522 1.21818 0.96274 0.88533 0.87404 1.21051 0.79324 0.88431 0.84575 1.90701 1.48745 1.69335 1.31340 1.43044 1.66829 1.10276 1.08387 1.17097 1.10166 0.82383 1.01740 1.20102 0.97849 0.95926 0.97293 1.20520 1.07495 0.92913 1.02897 1.17692 0.89320 0.92818 0.91025 1.20497 1.42912 0.95373 0.96351 0.90536 1.27025 0.91681 1.08054 0.91448 1.70458 1.24357 1.15016 1.30895 0.83689 0.77966 0.72597 0.77198 1.19852 1.20111 1.19928 1.20762 1.04804 0.94689 1.02631 1.20326 0.98555 0.93092 0.96479 1.21950 0.96442 1.00547 0.97469 1.21653 0.95516 1.02106 0.97360 1.22159 1.01119 1.00172 0.95671 1.22756 0.80753 1.00646 0.98636 1.87950 1.21478 1.76950 1.42381 0.90350 0.90737 0.91258 0.76766 0.89115 0.88561 0.88740 0.87792 0.87932 0.90663 0.89689 0.90656 0.91356 0.90897 0.91156 0.92304 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.83 37.15 0.33 -1.24 16 2 C 0.10 1.40 1.04 -91.72 -0.10 1.31 16 3 C 0.48 8.57 4.55 -10.98 -0.05 8.52 16 4 O -0.52 -11.35 12.78 5.56 0.07 -11.27 16 5 N -0.64 -11.65 4.42 -9.74 -0.04 -11.69 16 6 C -0.02 -0.49 6.29 -83.57 -0.53 -1.01 16 7 C -0.09 -2.02 9.89 -39.79 -0.39 -2.41 16 8 C -0.22 -5.31 9.74 -39.26 -0.38 -5.69 16 9 C 0.09 2.52 5.23 -106.80 -0.56 1.96 16 10 C -0.52 -13.95 8.92 -37.85 -0.34 -14.28 16 11 H 0.08 1.97 7.99 -52.49 -0.42 1.55 16 12 C 0.04 1.06 4.80 -17.34 -0.08 0.97 16 13 N -0.79 -21.27 12.42 55.55 0.69 -20.58 16 14 Si 1.06 21.62 30.02 -169.99 -5.10 16.52 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 C -0.21 -5.53 8.10 -39.26 -0.32 -5.85 16 19 C -0.06 -1.59 8.58 -39.79 -0.34 -1.94 16 20 C -0.13 -1.59 4.58 -26.59 -0.12 -1.71 16 21 C -0.13 -1.64 5.75 -26.55 -0.15 -1.79 16 22 C -0.15 -1.67 6.14 -26.59 -0.16 -1.83 16 23 C 0.05 0.58 6.40 37.20 0.24 0.81 16 24 O -0.37 -4.76 9.55 -35.23 -0.34 -5.09 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.40 6.15 8.07 -40.82 -0.33 5.83 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.30 8.45 7.17 -40.82 -0.29 8.16 16 32 H 0.10 2.85 6.78 -52.49 -0.36 2.49 16 33 H 0.10 2.53 6.40 -52.49 -0.34 2.19 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.14 7.78 -51.93 -0.40 0.73 16 36 H 0.07 1.20 6.72 -51.93 -0.35 0.85 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.82 6.51 -51.93 -0.34 0.48 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -29.57 328.01 -8.58 -38.15 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.85 Total: 13.21 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.96 Total: -24.18 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.65 Total: -32.27 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.27 Total: -16.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.10 Total: 16.52 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.57 -8.58 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334572439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.148 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds