Wall clock time and date at job start Tue Mar 31 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.71000 * 2 1 4 4 C 1.53408 * 109.67762 * 239.45932 * 2 1 3 5 5 C 1.53067 * 108.31869 * 304.94324 * 4 2 1 6 6 H 1.09000 * 109.42962 * 71.88429 * 5 4 2 7 7 C 1.50699 * 109.43346 * 191.74341 * 5 4 2 8 8 O 1.21278 * 119.99498 * 35.79002 * 7 5 4 9 9 N 1.34776 * 120.00240 * 215.78079 * 7 5 4 10 10 C 1.46502 * 120.00342 * 185.08997 * 9 7 5 11 11 C 1.50696 * 109.47185 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00229 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00118 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46811 * 60.00846 * 15 13 11 17 17 H 1.48498 * 109.47270 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47157 * 300.00733 * 15 13 11 19 19 C 1.50762 * 109.68977 * 311.81689 * 5 4 2 20 20 C 1.38512 * 118.76368 * 197.71498 * 19 5 4 21 21 C 1.38099 * 120.31044 * 180.44117 * 20 19 5 22 22 C 1.38289 * 119.98974 * 0.28230 * 21 20 19 23 23 C 1.37969 * 119.95295 * 359.35835 * 22 21 20 24 24 C 1.38367 * 121.40269 * 17.97618 * 19 5 4 25 25 O 1.35844 * 121.80427 * 359.18689 * 24 19 5 26 26 H 1.08999 * 109.46850 * 299.46333 * 1 2 3 27 27 H 1.08999 * 109.46996 * 59.45719 * 1 2 3 28 28 H 1.08999 * 109.47362 * 179.46323 * 1 2 3 29 29 H 1.09003 * 109.46999 * 180.54236 * 3 2 1 30 30 H 1.08997 * 109.47159 * 300.53695 * 3 2 1 31 31 H 1.08997 * 109.47567 * 60.54262 * 3 2 1 32 32 H 1.08999 * 109.69254 * 64.65572 * 4 2 1 33 33 H 1.08999 * 109.69068 * 185.19593 * 4 2 1 34 34 H 0.96998 * 119.99591 * 5.09348 * 9 7 5 35 35 H 1.08999 * 109.46762 * 300.00684 * 10 9 7 36 36 H 1.08997 * 109.46711 * 60.00364 * 10 9 7 37 37 H 0.96999 * 120.00298 * 179.97438 * 14 13 11 38 38 H 1.08000 * 119.84336 * 0.45787 * 20 19 5 39 39 H 1.08004 * 120.00332 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.02063 * 179.63049 * 22 21 20 41 41 H 1.08012 * 119.89340 * 180.28674 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4403 0.0000 4 6 2.0466 -0.7340 -1.2441 5 6 1.4249 -2.1325 -1.2703 6 1 0.3672 -2.0545 -1.5219 7 6 2.1251 -2.9731 -2.3067 8 8 3.3165 -2.8407 -2.4908 9 7 1.4275 -3.8722 -3.0288 10 6 2.1248 -4.7667 -3.9561 11 6 1.1241 -5.6665 -4.6343 12 1 0.0737 -5.5804 -4.3985 13 6 1.5495 -6.5990 -5.5565 14 7 2.8285 -6.7036 -5.8440 15 14 0.3091 -7.7149 -6.3966 16 1 -0.6707 -6.8892 -7.1473 17 1 1.0160 -8.6215 -7.3366 18 1 -0.4039 -8.5213 -5.3736 19 6 1.5722 -2.7794 0.0835 20 6 1.4227 -4.1526 0.1858 21 6 1.5420 -4.7772 1.4117 22 6 1.8061 -4.0303 2.5452 23 6 1.9633 -2.6630 2.4482 24 6 1.8460 -2.0305 1.2143 25 8 2.0111 -0.6833 1.1583 26 1 -0.3633 0.5055 0.8948 27 1 -0.3633 0.5222 -0.8851 28 1 -0.3634 -1.0276 -0.0096 29 1 3.1360 1.4358 -0.0097 30 1 1.6770 1.9585 -0.8851 31 1 1.6928 1.9529 0.8948 32 1 1.7566 -0.1861 -2.1407 33 1 3.1326 -0.8149 -1.1983 34 1 0.4637 -3.9269 -2.9346 35 1 2.6485 -4.1751 -4.7070 36 1 2.8437 -5.3727 -3.4048 37 1 3.1278 -7.3598 -6.4925 38 1 1.2122 -4.7376 -0.6972 39 1 1.4250 -5.8483 1.4858 40 1 1.8935 -4.5175 3.5051 41 1 2.1741 -2.0812 3.3334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334646663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:00 Heat of formation + Delta-G solvation = -65.111106 kcal Electronic energy + Delta-G solvation = -23333.659172 eV Core-core repulsion = 19984.991260 eV Total energy + Delta-G solvation = -3348.667912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22271 -38.69046 -37.81182 -34.69448 -34.21689 -32.73638 -32.19627 -30.15015 -28.58294 -27.57226 -27.40882 -24.69565 -23.02426 -22.47554 -22.06485 -19.87624 -18.99781 -17.76485 -17.03234 -16.39287 -15.94808 -15.65341 -15.27332 -15.04918 -14.40964 -14.39971 -14.17659 -13.89698 -13.66315 -13.18201 -12.97321 -12.78639 -12.43805 -12.37100 -12.25562 -12.02744 -11.97726 -11.78038 -11.52421 -11.32716 -11.03426 -10.91997 -10.75410 -10.66910 -10.41619 -10.34166 -9.44581 -9.20987 -8.76125 -8.64162 -8.06782 -7.93332 -6.18796 -4.26260 1.36195 1.51804 3.16570 3.23431 3.25851 3.28581 3.29854 3.73763 4.07026 4.33583 4.51400 4.62671 4.67335 4.80682 4.92201 5.09194 5.14825 5.17368 5.26974 5.34587 5.37829 5.47935 5.54182 5.56274 5.61179 5.64204 5.71060 5.88260 5.97122 6.00678 6.09020 6.20882 6.37150 6.54130 6.64052 6.86233 7.26736 7.37778 7.48144 7.51388 7.62586 7.93994 8.56513 8.74100 9.03407 9.40434 10.91289 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.004271 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.767948 B = 6553.759181 C = 7296.598245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.114 3.886 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.065 4.065 6 H 0.097 0.903 7 C 0.510 3.490 8 O -0.547 6.547 9 N -0.711 5.711 10 C 0.250 3.750 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.143 4.143 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.088 4.088 23 C -0.156 4.156 24 C 0.142 3.858 25 O -0.309 6.309 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.267 0.733 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 11.899 14.771 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.170 4.170 5 C -0.087 4.087 6 H 0.115 0.885 7 C 0.294 3.706 8 O -0.425 6.425 9 N -0.360 5.360 10 C 0.129 3.871 11 C -0.583 4.583 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.144 4.144 20 C -0.096 4.096 21 C -0.169 4.169 22 C -0.106 4.106 23 C -0.174 4.174 24 C 0.097 3.903 25 O -0.224 6.224 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.223 0.777 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.169 11.980 14.620 19.595 hybrid contribution -1.146 -0.907 -0.743 1.640 sum -6.315 11.073 13.876 18.843 Atomic orbital electron populations 1.22451 0.94526 1.03366 1.03048 1.21886 0.93762 0.92610 0.84133 1.21761 1.02415 0.92299 1.02903 1.22164 1.03082 0.93716 0.98086 1.20225 1.01126 0.95270 0.92034 0.88503 1.20077 0.87676 0.81019 0.81852 1.90656 1.15315 1.68277 1.68285 1.46559 1.10698 1.36301 1.42393 1.19119 0.92895 0.87638 0.87438 1.21170 0.93565 1.19077 1.24476 0.91942 1.24942 0.95462 0.97128 0.96369 1.69961 1.13948 1.35053 1.33255 0.86481 0.80887 0.80276 0.79306 1.20065 1.21051 1.20042 1.19383 1.07688 0.94459 0.92895 1.21180 0.96614 0.93192 0.98591 1.21025 1.03331 1.00125 0.92454 1.20910 0.98151 0.92904 0.98627 1.20518 1.06816 0.94789 0.95321 1.18571 0.96210 0.82497 0.92994 1.85992 1.76868 1.16773 1.42743 0.91573 0.90760 0.91510 0.91330 0.90319 0.91477 0.89622 0.88836 0.77688 0.95468 0.95560 0.92358 0.85050 0.85752 0.85595 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.17 37.16 0.30 -1.43 16 2 C 0.11 1.32 1.13 -90.41 -0.10 1.22 16 3 C -0.14 -1.24 8.88 37.16 0.33 -0.91 16 4 C -0.13 -1.84 4.25 -26.49 -0.11 -1.95 16 5 C -0.07 -1.00 2.06 -92.86 -0.19 -1.19 16 6 H 0.10 1.25 6.92 -51.93 -0.36 0.89 16 7 C 0.51 10.27 5.79 -10.99 -0.06 10.21 16 8 O -0.55 -13.39 16.07 5.56 0.09 -13.30 16 9 N -0.71 -14.77 4.83 -61.48 -0.30 -15.07 16 10 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 11 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 12 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.14 -2.23 4.86 -104.44 -0.51 -2.74 16 20 C -0.08 -1.22 9.10 -39.53 -0.36 -1.58 16 21 C -0.15 -2.06 10.04 -39.61 -0.40 -2.45 16 22 C -0.09 -1.07 10.04 -39.66 -0.40 -1.46 16 23 C -0.16 -2.03 9.94 -39.34 -0.39 -2.42 16 24 C 0.14 2.09 6.02 -39.20 -0.24 1.86 16 25 O -0.31 -4.29 9.68 -19.25 -0.19 -4.48 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.72 5.85 -51.93 -0.30 0.41 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.53 7.46 -51.93 -0.39 1.14 16 34 H 0.39 6.94 8.28 -40.82 -0.34 6.60 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 2.19 6.79 -52.49 -0.36 1.83 16 39 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -32.38 335.69 -8.12 -40.50 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.93 Total: 6.38 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.57 Total: -9.53 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.44 Total: -40.26 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.10 Total: -17.79 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.38 -8.12 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334646663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.614 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds