Wall clock time and date at job start Tue Mar 31 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.71000 * 2 1 4 4 C 1.53408 * 109.67762 * 239.45932 * 2 1 3 5 5 C 1.53067 * 108.31869 * 304.94324 * 4 2 1 6 6 H 1.09000 * 109.42962 * 71.88429 * 5 4 2 7 7 C 1.50699 * 109.43346 * 191.74341 * 5 4 2 8 8 O 1.21278 * 119.99498 * 35.79002 * 7 5 4 9 9 N 1.34776 * 120.00240 * 215.78079 * 7 5 4 10 10 C 1.46502 * 120.00342 * 185.08997 * 9 7 5 11 11 C 1.50696 * 109.47185 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00229 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00118 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46811 * 60.00846 * 15 13 11 17 17 H 1.48498 * 109.47270 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47157 * 300.00733 * 15 13 11 19 19 C 1.50762 * 109.68977 * 311.81689 * 5 4 2 20 20 C 1.38512 * 118.76368 * 197.71498 * 19 5 4 21 21 C 1.38099 * 120.31044 * 180.44117 * 20 19 5 22 22 C 1.38289 * 119.98974 * 0.28230 * 21 20 19 23 23 C 1.37969 * 119.95295 * 359.35835 * 22 21 20 24 24 C 1.38367 * 121.40269 * 17.97618 * 19 5 4 25 25 O 1.35844 * 121.80427 * 359.18689 * 24 19 5 26 26 H 1.08999 * 109.46850 * 299.46333 * 1 2 3 27 27 H 1.08999 * 109.46996 * 59.45719 * 1 2 3 28 28 H 1.08999 * 109.47362 * 179.46323 * 1 2 3 29 29 H 1.09003 * 109.46999 * 180.54236 * 3 2 1 30 30 H 1.08997 * 109.47159 * 300.53695 * 3 2 1 31 31 H 1.08997 * 109.47567 * 60.54262 * 3 2 1 32 32 H 1.08999 * 109.69254 * 64.65572 * 4 2 1 33 33 H 1.08999 * 109.69068 * 185.19593 * 4 2 1 34 34 H 0.96998 * 119.99591 * 5.09348 * 9 7 5 35 35 H 1.08999 * 109.46762 * 300.00684 * 10 9 7 36 36 H 1.08997 * 109.46711 * 60.00364 * 10 9 7 37 37 H 0.96999 * 120.00298 * 179.97438 * 14 13 11 38 38 H 1.08000 * 119.84336 * 0.45787 * 20 19 5 39 39 H 1.08004 * 120.00332 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.02063 * 179.63049 * 22 21 20 41 41 H 1.08012 * 119.89340 * 180.28674 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4403 0.0000 4 6 2.0466 -0.7340 -1.2441 5 6 1.4249 -2.1325 -1.2703 6 1 0.3672 -2.0545 -1.5219 7 6 2.1251 -2.9731 -2.3067 8 8 3.3165 -2.8407 -2.4908 9 7 1.4275 -3.8722 -3.0288 10 6 2.1248 -4.7667 -3.9561 11 6 1.1241 -5.6665 -4.6343 12 1 0.0737 -5.5804 -4.3985 13 6 1.5495 -6.5990 -5.5565 14 7 2.8285 -6.7036 -5.8440 15 14 0.3091 -7.7149 -6.3966 16 1 -0.6707 -6.8892 -7.1473 17 1 1.0160 -8.6215 -7.3366 18 1 -0.4039 -8.5213 -5.3736 19 6 1.5722 -2.7794 0.0835 20 6 1.4227 -4.1526 0.1858 21 6 1.5420 -4.7772 1.4117 22 6 1.8061 -4.0303 2.5452 23 6 1.9633 -2.6630 2.4482 24 6 1.8460 -2.0305 1.2143 25 8 2.0111 -0.6833 1.1583 26 1 -0.3633 0.5055 0.8948 27 1 -0.3633 0.5222 -0.8851 28 1 -0.3634 -1.0276 -0.0096 29 1 3.1360 1.4358 -0.0097 30 1 1.6770 1.9585 -0.8851 31 1 1.6928 1.9529 0.8948 32 1 1.7566 -0.1861 -2.1407 33 1 3.1326 -0.8149 -1.1983 34 1 0.4637 -3.9269 -2.9346 35 1 2.6485 -4.1751 -4.7070 36 1 2.8437 -5.3727 -3.4048 37 1 3.1278 -7.3598 -6.4925 38 1 1.2122 -4.7376 -0.6972 39 1 1.4250 -5.8483 1.4858 40 1 1.8935 -4.5175 3.5051 41 1 2.1741 -2.0812 3.3334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334646663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:59 Heat of formation + Delta-G solvation = -85.937264 kcal Electronic energy + Delta-G solvation = -23334.562262 eV Core-core repulsion = 19984.991260 eV Total energy + Delta-G solvation = -3349.571002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35615 -40.31193 -38.83205 -36.25694 -35.76567 -34.41641 -33.59307 -31.22484 -29.83250 -29.20540 -28.31332 -26.13248 -24.49871 -23.64058 -23.44153 -21.53131 -20.11228 -19.13609 -18.53476 -17.67538 -17.45878 -16.98043 -16.88744 -16.18009 -16.05746 -15.86367 -15.26814 -15.10742 -14.99819 -14.45903 -14.25644 -14.07855 -13.92609 -13.71691 -13.41786 -13.18254 -13.00343 -12.95713 -12.86919 -12.70012 -12.54875 -12.38178 -12.25301 -11.86144 -11.62559 -11.54224 -11.51778 -10.83145 -10.80861 -9.90677 -9.80127 -9.14255 -8.30551 -6.47733 0.27602 0.43302 1.42244 1.46135 1.54435 1.61161 2.18898 2.29134 2.47029 2.80807 3.04332 3.41517 3.54642 3.61887 3.81896 3.92290 3.99147 4.12754 4.17542 4.28226 4.41404 4.50025 4.53270 4.68186 4.73733 4.83988 4.86229 4.95610 5.01381 5.03111 5.08790 5.19385 5.20037 5.28521 5.35657 5.43312 5.45669 5.56857 5.63239 5.81427 5.84780 6.48112 6.61743 6.80760 7.20296 7.38497 8.81426 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.004271 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.767948 B = 6553.759181 C = 7296.598245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.112 3.888 3 C -0.135 4.135 4 C -0.132 4.132 5 C -0.052 4.052 6 H 0.125 0.875 7 C 0.510 3.490 8 O -0.596 6.596 9 N -0.702 5.702 10 C 0.268 3.732 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.984 3.016 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.163 4.163 20 C -0.102 4.102 21 C -0.159 4.159 22 C -0.078 4.078 23 C -0.158 4.158 24 C 0.132 3.868 25 O -0.317 6.317 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.408 0.592 35 H -0.013 1.013 36 H -0.014 1.014 37 H 0.269 0.731 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 12.543 16.266 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.075 3.925 3 C -0.192 4.192 4 C -0.171 4.171 5 C -0.073 4.073 6 H 0.142 0.858 7 C 0.297 3.703 8 O -0.478 6.478 9 N -0.352 5.352 10 C 0.145 3.855 11 C -0.594 4.594 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.807 3.193 16 H -0.186 1.186 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.164 4.164 20 C -0.121 4.121 21 C -0.177 4.177 22 C -0.095 4.095 23 C -0.177 4.177 24 C 0.087 3.913 25 O -0.232 6.232 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.823 12.651 16.142 21.951 hybrid contribution -0.254 -1.079 -1.141 1.591 sum -8.076 11.572 15.001 20.595 Atomic orbital electron populations 1.22441 0.92652 1.03189 1.04739 1.22134 0.95187 0.93152 0.82037 1.21815 1.01860 0.90786 1.04691 1.22195 1.01042 0.93337 1.00477 1.20186 1.01968 0.94863 0.90324 0.85753 1.20974 0.87162 0.80447 0.81719 1.90626 1.17770 1.69694 1.69679 1.46280 1.11417 1.35777 1.41694 1.18549 0.92618 0.87432 0.86865 1.21555 0.94434 1.18985 1.24423 0.89782 1.26050 0.97516 0.98805 0.97014 1.70132 1.16558 1.36096 1.34136 0.85218 0.78022 0.77907 0.78150 1.18621 1.21107 1.18615 1.19414 1.09222 0.94627 0.93127 1.21193 0.98440 0.93443 0.99005 1.21293 1.02992 1.01157 0.92220 1.21312 0.96086 0.92596 0.99552 1.20914 1.05830 0.95439 0.95492 1.18793 0.96225 0.82970 0.93335 1.85989 1.77202 1.16370 1.43658 0.90317 0.88666 0.92587 0.92339 0.88184 0.90003 0.87996 0.92093 0.75649 0.99466 0.99566 0.92226 0.86996 0.84243 0.81963 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.17 71.98 0.59 -2.33 16 2 C 0.11 2.42 1.13 -10.66 -0.01 2.40 16 3 C -0.13 -2.15 8.88 71.98 0.64 -1.51 16 4 C -0.13 -3.65 4.25 30.75 0.13 -3.52 16 5 C -0.05 -1.62 2.06 -12.24 -0.03 -1.64 16 6 H 0.12 3.08 6.92 -2.39 -0.02 3.06 16 7 C 0.51 21.49 5.79 87.66 0.51 21.99 16 8 O -0.60 -31.11 16.07 -3.02 -0.05 -31.16 16 9 N -0.70 -30.32 4.83 -466.80 -2.26 -32.58 16 10 C 0.27 14.86 5.43 85.63 0.47 15.33 16 11 C -0.56 -30.21 9.28 25.60 0.24 -29.98 16 12 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 15 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 C -0.16 -5.07 4.86 -19.75 -0.10 -5.17 16 20 C -0.10 -3.27 9.10 22.30 0.20 -3.06 16 21 C -0.16 -4.16 10.04 22.25 0.22 -3.94 16 22 C -0.08 -1.70 10.04 22.22 0.22 -1.47 16 23 C -0.16 -3.78 9.94 22.42 0.22 -3.56 16 24 C 0.13 3.75 6.02 22.52 0.14 3.89 16 25 O -0.32 -8.40 9.68 -91.80 -0.89 -9.28 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.08 5.85 -2.39 -0.01 1.06 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.08 7.46 -2.39 -0.02 2.06 16 34 H 0.41 14.60 8.28 -92.71 -0.77 13.84 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.11 3.91 6.79 -2.91 -0.02 3.89 16 39 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.15 2.84 8.06 -2.90 -0.02 2.81 16 Total: -1.00 -74.27 335.69 3.29 -70.98 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.27 Total: 25.68 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 3.91 Total: -11.77 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -1.97 Total: -88.61 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.94 Total: -40.45 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -74.27 3.29 -70.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334646663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.962 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds