Wall clock time and date at job start Tue Mar 31 2020 07:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37105 * 119.99724 * 2 1 4 4 H 1.08003 * 119.99452 * 185.25969 * 3 2 1 5 5 C 1.38949 * 119.99837 * 5.25989 * 3 2 1 6 6 N 1.31409 * 120.00217 * 5.25707 * 5 3 2 7 7 Si 1.86804 * 119.99621 * 185.26140 * 5 3 2 8 8 H 1.48499 * 109.47286 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46827 * 119.99992 * 7 5 3 10 10 H 1.48493 * 109.46991 * 239.99591 * 7 5 3 11 11 C 1.34774 * 120.00089 * 180.02562 * 2 1 3 12 12 O 1.21301 * 119.99760 * 185.68989 * 11 2 1 13 13 C 1.50700 * 120.00396 * 5.68949 * 11 2 1 14 14 H 1.09003 * 109.39636 * 25.41452 * 13 11 2 15 15 C 1.53067 * 109.43631 * 265.52434 * 13 11 2 16 16 C 1.53404 * 108.33467 * 191.74613 * 15 13 11 17 17 C 1.53005 * 109.68678 * 184.47346 * 16 15 13 18 18 C 1.52997 * 109.68482 * 305.03582 * 16 15 13 19 19 O 1.42922 * 108.32188 * 64.71893 * 16 15 13 20 20 C 1.35852 * 117.87241 * 310.84276 * 19 16 15 21 21 C 1.39144 * 118.49080 * 197.02973 * 20 19 16 22 22 C 1.37964 * 120.21183 * 180.24884 * 21 20 19 23 23 C 1.38285 * 119.95917 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.98474 * 359.91992 * 23 22 21 25 25 C 1.38372 * 121.80920 * 17.13397 * 20 19 16 26 26 H 1.09001 * 109.46422 * 175.10799 * 1 2 3 27 27 H 1.09000 * 109.46801 * 295.10449 * 1 2 3 28 28 H 1.08994 * 109.47523 * 55.10839 * 1 2 3 29 29 H 0.97003 * 119.99766 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.69597 * 311.46915 * 15 13 11 31 31 H 1.09004 * 109.70017 * 72.02260 * 15 13 11 32 32 H 1.08999 * 109.46358 * 60.00455 * 17 16 15 33 33 H 1.08997 * 109.46889 * 179.97438 * 17 16 15 34 34 H 1.08995 * 109.47002 * 300.00359 * 17 16 15 35 35 H 1.09007 * 109.47409 * 59.99893 * 18 16 15 36 36 H 1.08999 * 109.47519 * 179.97438 * 18 16 15 37 37 H 1.09003 * 109.47459 * 300.00021 * 18 16 15 38 38 H 1.08005 * 119.89291 * 0.22140 * 21 20 19 39 39 H 1.08002 * 120.02158 * 179.97438 * 22 21 20 40 40 H 1.08009 * 120.00751 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.84345 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2271 1.1893 -0.0857 5 6 1.4600 2.3881 0.1103 6 7 0.1625 2.3833 0.3183 7 14 2.3764 4.0093 -0.0371 8 1 3.8188 3.7433 -0.2689 9 1 1.8273 4.7863 -1.1773 10 1 2.2112 4.7870 1.2170 11 6 2.1389 -1.1672 -0.0005 12 8 3.3474 -1.1697 0.1036 13 6 1.3911 -2.4691 -0.1305 14 1 0.4470 -2.2943 -0.6466 15 6 1.1121 -3.0375 1.2631 16 6 0.6229 -4.4829 1.1056 17 6 0.2285 -5.0454 2.4727 18 6 -0.5833 -4.5192 0.1651 19 8 1.6876 -5.2598 0.5529 20 6 2.3231 -4.7758 -0.5459 21 6 3.0957 -5.6495 -1.3047 22 6 3.7605 -5.1946 -2.4247 23 6 3.6591 -3.8664 -2.7960 24 6 2.8914 -2.9969 -2.0466 25 6 2.2215 -3.4478 -0.9214 26 1 -0.3632 -1.0240 -0.0876 27 1 -0.3633 0.4360 0.9306 28 1 -0.3634 0.5878 -0.8429 29 1 -0.3194 3.2216 0.3956 30 1 2.0265 -3.0216 1.8561 31 1 0.3442 -2.4414 1.7561 32 1 -0.5700 -4.4380 2.8987 33 1 -0.1188 -6.0720 2.3567 34 1 1.0929 -5.0267 3.1364 35 1 -0.2955 -4.1267 -0.8103 36 1 -0.9277 -5.5475 0.0553 37 1 -1.3859 -3.9092 0.5797 38 1 3.1756 -6.6871 -1.0156 39 1 4.3597 -5.8754 -3.0112 40 1 4.1796 -3.5094 -3.6725 41 1 2.8136 -1.9601 -2.3389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334720529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:06 Heat of formation + Delta-G solvation = -52.357604 kcal Electronic energy + Delta-G solvation = -24089.071730 eV Core-core repulsion = 20740.956852 eV Total energy + Delta-G solvation = -3348.114878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.27311 -40.15105 -38.77107 -36.79516 -35.70051 -33.79214 -33.25849 -31.16911 -29.62616 -28.37421 -28.25382 -26.72295 -25.27611 -23.76593 -23.41241 -20.97549 -19.81816 -18.98763 -18.57692 -18.24056 -17.29303 -16.67854 -16.48103 -16.16163 -15.88087 -15.74264 -15.10460 -15.04457 -14.80498 -14.37813 -14.18583 -13.90371 -13.72980 -13.55417 -13.21512 -13.10034 -12.96450 -12.88506 -12.80484 -12.71607 -12.51067 -12.36813 -12.18430 -12.14568 -11.80972 -11.60031 -11.36307 -11.08526 -10.31060 -9.91086 -9.69842 -9.07586 -8.27514 -5.94655 0.39299 0.50736 1.31902 1.37812 1.51501 1.93897 2.21306 2.27118 2.75360 3.06119 3.09232 3.50511 3.67377 3.69159 3.86995 3.94132 4.04283 4.17923 4.21655 4.31527 4.43653 4.54191 4.57935 4.64794 4.70963 4.75644 4.85565 4.86812 4.96778 5.05283 5.09047 5.14639 5.20982 5.29795 5.39841 5.40770 5.47071 5.55719 5.64873 5.90552 6.01054 6.44549 6.52785 7.13350 7.44196 7.99154 8.63774 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.005506 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.111201 B = 5083.858477 C = 6058.888330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.462 5.462 3 C -0.340 4.340 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.896 5.896 7 Si 0.991 3.009 8 H -0.278 1.278 9 H -0.266 1.266 10 H -0.270 1.270 11 C 0.443 3.557 12 O -0.631 6.631 13 C -0.049 4.049 14 H 0.108 0.892 15 C -0.130 4.130 16 C 0.113 3.887 17 C -0.133 4.133 18 C -0.172 4.172 19 O -0.317 6.317 20 C 0.126 3.874 21 C -0.160 4.160 22 C -0.081 4.081 23 C -0.161 4.161 24 C -0.085 4.085 25 C -0.150 4.150 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.272 0.728 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.140 0.860 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -14.820 -1.581 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.179 5.179 3 C -0.468 4.468 4 H 0.091 0.909 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.815 3.185 8 H -0.203 1.203 9 H -0.191 1.191 10 H -0.195 1.195 11 C 0.232 3.768 12 O -0.519 6.519 13 C -0.070 4.070 14 H 0.125 0.875 15 C -0.168 4.168 16 C 0.076 3.924 17 C -0.190 4.190 18 C -0.229 4.229 19 O -0.232 6.232 20 C 0.080 3.920 21 C -0.178 4.178 22 C -0.099 4.099 23 C -0.179 4.179 24 C -0.104 4.104 25 C -0.152 4.152 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.158 0.842 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.085 -14.800 -1.390 15.416 hybrid contribution 0.503 1.779 -0.065 1.850 sum -3.582 -13.021 -1.455 13.583 Atomic orbital electron populations 1.21748 0.78754 0.98311 1.03175 1.43975 1.07123 1.04617 1.62228 1.19751 0.92725 0.83947 1.50367 0.90917 1.26021 0.96800 1.02081 0.95499 1.70219 1.07415 1.28191 1.47737 0.84902 0.77887 0.77191 0.78518 1.20331 1.19129 1.19508 1.20424 0.87704 0.85299 0.83383 1.90484 1.16404 1.87569 1.57418 1.20071 0.98390 0.91040 0.97518 0.87473 1.22184 1.02307 0.97518 0.94773 1.22135 0.85724 0.88475 0.96101 1.21809 1.02523 1.02946 0.91679 1.22421 0.97202 1.04310 0.98991 1.85975 1.47779 1.48705 1.40730 1.18807 0.94609 0.90945 0.87599 1.20882 1.00828 1.00123 0.95997 1.21263 0.97632 0.95350 0.95613 1.21241 1.00891 0.94328 1.01486 1.20916 0.96235 0.98752 0.94489 1.19485 1.04044 0.93221 0.98410 0.91930 0.91827 0.93304 0.91720 0.92959 0.88400 0.88280 0.89715 0.92251 0.93223 0.89877 0.88782 0.83033 0.81743 0.84250 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.54 8.72 127.77 1.11 6.65 16 2 N -0.46 -24.51 3.03 -658.88 -1.99 -26.50 16 3 C -0.34 -19.79 9.55 84.04 0.80 -18.99 16 4 H 0.07 4.58 7.20 -2.91 -0.02 4.56 16 5 C 0.00 -0.17 5.42 84.93 0.46 0.29 16 6 N -0.90 -46.59 9.53 21.66 0.21 -46.39 16 7 Si 0.99 43.04 29.56 68.60 2.03 45.06 16 8 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 9 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 C 0.44 22.66 5.60 87.66 0.49 23.15 16 12 O -0.63 -37.68 15.39 -3.09 -0.05 -37.73 16 13 C -0.05 -1.94 1.31 -12.24 -0.02 -1.95 16 14 H 0.11 3.85 4.81 -2.39 -0.01 3.84 16 15 C -0.13 -4.37 4.39 30.75 0.13 -4.23 16 16 C 0.11 2.98 1.13 -10.66 -0.01 2.97 16 17 C -0.13 -2.59 8.89 71.98 0.64 -1.95 16 18 C -0.17 -3.78 8.15 71.98 0.59 -3.19 16 19 O -0.32 -9.82 9.68 -91.89 -0.89 -10.71 16 20 C 0.13 4.25 6.02 22.52 0.14 4.38 16 21 C -0.16 -4.49 9.94 22.42 0.22 -4.27 16 22 C -0.08 -2.08 10.04 22.22 0.22 -1.86 16 23 C -0.16 -5.01 10.04 22.25 0.22 -4.78 16 24 C -0.09 -3.35 8.56 22.30 0.19 -3.16 16 25 C -0.15 -5.80 4.53 -19.75 -0.09 -5.89 16 26 H 0.06 2.28 5.26 -2.39 -0.01 2.27 16 27 H 0.06 3.02 6.88 -2.39 -0.02 3.00 16 28 H 0.05 2.31 7.24 -2.39 -0.02 2.30 16 29 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 30 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 31 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.27 5.88 -2.38 -0.01 1.25 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.09 4.05 7.33 -2.91 -0.02 4.03 16 Total: -1.00 -71.36 324.82 5.44 -65.92 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.03 Total: 23.18 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.11 Total: -12.84 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.79 Total: -72.89 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.94 Total: -48.44 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.36 5.44 -65.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334720529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.565 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds