Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37098 * 120.00316 * 2 1 4 4 H 1.08002 * 120.00124 * 185.44965 * 3 2 1 5 5 C 1.38954 * 120.00014 * 5.44377 * 3 2 1 6 6 N 1.31411 * 119.99677 * 5.46969 * 5 3 2 7 7 Si 1.86798 * 120.00041 * 185.46599 * 5 3 2 8 8 H 1.48498 * 109.47068 * 90.00264 * 7 5 3 9 9 H 1.48500 * 109.46866 * 210.00454 * 7 5 3 10 10 H 1.48501 * 109.47094 * 330.00281 * 7 5 3 11 11 C 1.34782 * 120.00049 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00177 * 184.59036 * 11 2 1 13 13 C 1.50703 * 119.99665 * 4.59580 * 11 2 1 14 14 H 1.09003 * 109.43251 * 324.96074 * 13 11 2 15 15 C 1.53064 * 109.43567 * 84.87583 * 13 11 2 16 16 C 1.53405 * 108.30110 * 168.16565 * 15 13 11 17 17 C 1.52995 * 109.69022 * 54.97185 * 16 15 13 18 18 C 1.53003 * 109.68806 * 175.49884 * 16 15 13 19 19 O 1.42829 * 108.36367 * 295.25238 * 16 15 13 20 20 C 1.35848 * 117.84656 * 49.20427 * 19 16 15 21 21 C 1.39147 * 118.49231 * 162.93868 * 20 19 16 22 22 C 1.37965 * 120.21781 * 179.77969 * 21 20 19 23 23 C 1.38294 * 119.95332 * 359.97438 * 22 21 20 24 24 C 1.38110 * 119.98541 * 0.10638 * 23 22 21 25 25 C 1.38369 * 121.81105 * 342.85927 * 20 19 16 26 26 H 1.08993 * 109.47449 * 174.45025 * 1 2 3 27 27 H 1.08997 * 109.46904 * 294.45782 * 1 2 3 28 28 H 1.09008 * 109.46735 * 54.45331 * 1 2 3 29 29 H 0.96999 * 119.99970 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.69885 * 48.46295 * 15 13 11 31 31 H 1.09006 * 109.73332 * 287.88435 * 15 13 11 32 32 H 1.09000 * 109.47413 * 59.99981 * 17 16 15 33 33 H 1.08998 * 109.47029 * 300.00310 * 17 16 15 34 34 H 1.09004 * 109.47761 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47016 * 299.46962 * 18 16 15 36 36 H 1.09002 * 109.47141 * 59.47017 * 18 16 15 37 37 H 1.09003 * 109.47097 * 179.46916 * 18 16 15 38 38 H 1.08008 * 119.89202 * 359.75330 * 21 20 19 39 39 H 1.07994 * 120.02458 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00646 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.84077 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2269 1.1893 -0.0888 5 6 1.4605 2.3880 0.1142 6 7 0.1642 2.3828 0.3299 7 14 2.3756 4.0093 -0.0389 8 1 2.3882 4.4382 -1.4605 9 1 1.6948 5.0414 0.7836 10 1 3.7711 3.8370 0.4387 11 6 2.1389 -1.1672 0.0005 12 8 3.3488 -1.1689 0.0846 13 6 1.3889 -2.4703 -0.1035 14 1 0.4398 -2.3857 0.4259 15 6 1.1238 -2.7891 -1.5769 16 6 0.6343 -4.2397 -1.6753 17 6 -0.5808 -4.4365 -0.7667 18 6 0.2525 -4.5578 -3.1224 19 8 1.6933 -5.1014 -1.2558 20 6 2.3176 -4.8153 -0.0837 21 6 3.0829 -5.8081 0.5203 22 6 3.7360 -5.5548 1.7089 23 6 3.6310 -4.3102 2.3028 24 6 2.8710 -3.3230 1.7069 25 6 2.2117 -3.5722 0.5147 26 1 -0.3634 -1.0228 -0.0994 27 1 -0.3633 0.4255 0.9354 28 1 -0.3633 0.5975 -0.8362 29 1 -0.3174 3.2210 0.4099 30 1 2.0438 -2.6722 -2.1494 31 1 0.3601 -2.1164 -1.9674 32 1 -1.3799 -3.7635 -1.0777 33 1 -0.3027 -4.2180 0.2643 34 1 -0.9260 -5.4678 -0.8396 35 1 -0.5490 -3.8917 -3.4415 36 1 1.1204 -4.4166 -3.7666 37 1 -0.0857 -5.5918 -3.1900 38 1 3.1655 -6.7805 0.0574 39 1 4.3294 -6.3275 2.1748 40 1 4.1422 -4.1108 3.2330 41 1 2.7910 -2.3517 2.1725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334720536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = -34.615145 kcal Electronic energy + Delta-G solvation = -24098.002460 eV Core-core repulsion = 20750.656953 eV Total energy + Delta-G solvation = -3347.345507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94124 -38.34907 -37.54270 -34.85758 -34.29333 -32.30709 -31.46320 -29.85022 -28.30532 -27.37593 -26.44584 -24.95914 -23.68385 -22.44035 -22.12450 -19.38922 -18.40159 -17.29269 -16.94324 -16.44563 -16.03294 -15.29076 -14.94757 -14.64422 -14.26933 -14.13935 -13.66830 -13.54724 -13.39872 -12.92972 -12.85342 -12.45880 -12.34089 -12.14294 -12.02474 -11.81903 -11.67320 -11.49222 -11.17476 -11.07106 -11.00998 -10.80168 -10.54564 -10.43719 -10.38829 -10.22246 -10.00961 -9.07936 -8.41351 -8.30042 -7.87550 -7.78363 -6.26812 -3.83796 1.69850 1.81673 3.13364 3.22556 3.28468 3.41745 3.80167 4.03157 4.16229 4.70698 4.82706 4.87297 4.90283 5.10011 5.17302 5.26745 5.35946 5.41148 5.54443 5.57472 5.66181 5.71354 5.76457 5.77806 5.88877 5.92997 5.95294 6.09005 6.19407 6.21182 6.33013 6.37366 6.47718 6.64165 6.86216 6.98594 7.02301 7.14793 7.35703 7.53632 7.77946 8.04113 8.46247 9.16753 9.41742 9.95939 10.67542 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.005469 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.092511 B = 5118.829018 C = 6033.141816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.446 5.446 3 C -0.298 4.298 4 H 0.104 0.896 5 C 0.026 3.974 6 N -0.889 5.889 7 Si 0.930 3.070 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.446 3.554 12 O -0.584 6.584 13 C -0.060 4.060 14 H 0.096 0.904 15 C -0.132 4.132 16 C 0.114 3.886 17 C -0.175 4.175 18 C -0.136 4.136 19 O -0.312 6.312 20 C 0.135 3.865 21 C -0.162 4.162 22 C -0.093 4.093 23 C -0.160 4.160 24 C -0.049 4.049 25 C -0.126 4.126 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -12.937 -1.461 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.164 5.164 3 C -0.426 4.426 4 H 0.121 0.879 5 C -0.176 4.176 6 N -0.531 5.531 7 Si 0.757 3.243 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.233 3.767 12 O -0.469 6.469 13 C -0.081 4.081 14 H 0.113 0.887 15 C -0.170 4.170 16 C 0.076 3.924 17 C -0.232 4.232 18 C -0.193 4.193 19 O -0.227 6.227 20 C 0.090 3.910 21 C -0.180 4.180 22 C -0.111 4.111 23 C -0.178 4.178 24 C -0.067 4.067 25 C -0.127 4.127 26 H 0.042 0.958 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.961 -12.888 -1.531 13.312 hybrid contribution 0.141 1.227 0.029 1.235 sum -2.820 -11.661 -1.502 12.091 Atomic orbital electron populations 1.21844 0.80511 0.96245 1.04596 1.43707 1.05917 1.04722 1.62069 1.19817 0.93541 0.82010 1.47259 0.87853 1.25300 0.95861 0.99705 0.96693 1.70130 1.06994 1.27147 1.48792 0.85847 0.79434 0.80748 0.78235 1.20383 1.20877 1.19416 1.19516 0.87945 0.83986 0.85229 1.90538 1.13932 1.86582 1.55813 1.20149 0.98753 0.93084 0.96109 0.88660 1.22183 1.03119 0.95617 0.96122 1.21861 0.85851 0.89356 0.95324 1.22423 0.97601 1.02626 1.00586 1.21759 1.02193 1.02487 0.92863 1.85959 1.47728 1.53282 1.35730 1.18590 0.94146 0.92505 0.85730 1.20418 1.02341 0.98321 0.96947 1.20799 0.98625 0.96952 0.94771 1.20961 1.01891 0.93767 1.01193 1.20964 0.93566 0.98531 0.93650 1.19424 1.03066 0.92964 0.97272 0.95824 0.90717 0.91706 0.92381 0.90178 0.89553 0.90777 0.91527 0.91748 0.90359 0.91526 0.91620 0.85884 0.86051 0.86337 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.70 59.84 0.52 2.99 16 2 N -0.45 -11.29 3.03 -122.19 -0.37 -11.66 16 3 C -0.30 -8.26 9.55 -14.93 -0.14 -8.40 16 4 H 0.10 3.02 7.20 -52.49 -0.38 2.64 16 5 C 0.03 0.68 5.42 -17.47 -0.09 0.58 16 6 N -0.89 -23.02 9.54 55.50 0.53 -22.49 16 7 Si 0.93 20.73 29.56 -169.99 -5.02 15.70 16 8 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 11 C 0.45 10.80 5.90 -10.98 -0.06 10.73 16 12 O -0.58 -16.20 14.72 5.55 0.08 -16.11 16 13 C -0.06 -1.14 1.23 -92.85 -0.11 -1.26 16 14 H 0.10 1.70 5.07 -51.93 -0.26 1.43 16 15 C -0.13 -2.21 4.32 -26.49 -0.11 -2.33 16 16 C 0.11 1.60 1.13 -90.41 -0.10 1.49 16 17 C -0.18 -2.15 8.14 37.15 0.30 -1.85 16 18 C -0.14 -1.50 8.88 37.16 0.33 -1.17 16 19 O -0.31 -5.07 9.68 -19.26 -0.19 -5.26 16 20 C 0.14 2.35 6.02 -39.20 -0.24 2.11 16 21 C -0.16 -2.48 9.94 -39.34 -0.39 -2.87 16 22 C -0.09 -1.34 10.04 -39.66 -0.40 -1.74 16 23 C -0.16 -2.56 10.04 -39.61 -0.40 -2.95 16 24 C -0.05 -0.93 8.34 -39.53 -0.33 -1.26 16 25 C -0.13 -2.39 4.54 -104.44 -0.47 -2.86 16 26 H 0.02 0.43 4.97 -51.93 -0.26 0.17 16 27 H 0.07 1.77 6.91 -51.93 -0.36 1.41 16 28 H 0.06 1.50 7.22 -51.92 -0.37 1.12 16 29 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 31 H 0.09 1.34 7.81 -51.93 -0.41 0.93 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.91 5.88 -51.93 -0.31 0.60 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.12 2.54 7.16 -52.48 -0.38 2.17 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -30.86 323.54 -7.46 -38.31 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.66 Total: 5.42 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.70 Total: -8.78 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.16 Total: -34.15 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.10 Total: -21.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.86 -7.46 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334720536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.696 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds