Wall clock time and date at job start Tue Mar 31 2020 07:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37098 * 120.00316 * 2 1 4 4 H 1.08002 * 120.00124 * 185.44965 * 3 2 1 5 5 C 1.38954 * 120.00014 * 5.44377 * 3 2 1 6 6 N 1.31411 * 119.99677 * 5.46969 * 5 3 2 7 7 Si 1.86798 * 120.00041 * 185.46599 * 5 3 2 8 8 H 1.48498 * 109.47068 * 90.00264 * 7 5 3 9 9 H 1.48500 * 109.46866 * 210.00454 * 7 5 3 10 10 H 1.48501 * 109.47094 * 330.00281 * 7 5 3 11 11 C 1.34782 * 120.00049 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00177 * 184.59036 * 11 2 1 13 13 C 1.50703 * 119.99665 * 4.59580 * 11 2 1 14 14 H 1.09003 * 109.43251 * 324.96074 * 13 11 2 15 15 C 1.53064 * 109.43567 * 84.87583 * 13 11 2 16 16 C 1.53405 * 108.30110 * 168.16565 * 15 13 11 17 17 C 1.52995 * 109.69022 * 54.97185 * 16 15 13 18 18 C 1.53003 * 109.68806 * 175.49884 * 16 15 13 19 19 O 1.42829 * 108.36367 * 295.25238 * 16 15 13 20 20 C 1.35848 * 117.84656 * 49.20427 * 19 16 15 21 21 C 1.39147 * 118.49231 * 162.93868 * 20 19 16 22 22 C 1.37965 * 120.21781 * 179.77969 * 21 20 19 23 23 C 1.38294 * 119.95332 * 359.97438 * 22 21 20 24 24 C 1.38110 * 119.98541 * 0.10638 * 23 22 21 25 25 C 1.38369 * 121.81105 * 342.85927 * 20 19 16 26 26 H 1.08993 * 109.47449 * 174.45025 * 1 2 3 27 27 H 1.08997 * 109.46904 * 294.45782 * 1 2 3 28 28 H 1.09008 * 109.46735 * 54.45331 * 1 2 3 29 29 H 0.96999 * 119.99970 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.69885 * 48.46295 * 15 13 11 31 31 H 1.09006 * 109.73332 * 287.88435 * 15 13 11 32 32 H 1.09000 * 109.47413 * 59.99981 * 17 16 15 33 33 H 1.08998 * 109.47029 * 300.00310 * 17 16 15 34 34 H 1.09004 * 109.47761 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47016 * 299.46962 * 18 16 15 36 36 H 1.09002 * 109.47141 * 59.47017 * 18 16 15 37 37 H 1.09003 * 109.47097 * 179.46916 * 18 16 15 38 38 H 1.08008 * 119.89202 * 359.75330 * 21 20 19 39 39 H 1.07994 * 120.02458 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00646 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.84077 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2269 1.1893 -0.0888 5 6 1.4605 2.3880 0.1142 6 7 0.1642 2.3828 0.3299 7 14 2.3756 4.0093 -0.0389 8 1 2.3882 4.4382 -1.4605 9 1 1.6948 5.0414 0.7836 10 1 3.7711 3.8370 0.4387 11 6 2.1389 -1.1672 0.0005 12 8 3.3488 -1.1689 0.0846 13 6 1.3889 -2.4703 -0.1035 14 1 0.4398 -2.3857 0.4259 15 6 1.1238 -2.7891 -1.5769 16 6 0.6343 -4.2397 -1.6753 17 6 -0.5808 -4.4365 -0.7667 18 6 0.2525 -4.5578 -3.1224 19 8 1.6933 -5.1014 -1.2558 20 6 2.3176 -4.8153 -0.0837 21 6 3.0829 -5.8081 0.5203 22 6 3.7360 -5.5548 1.7089 23 6 3.6310 -4.3102 2.3028 24 6 2.8710 -3.3230 1.7069 25 6 2.2117 -3.5722 0.5147 26 1 -0.3634 -1.0228 -0.0994 27 1 -0.3633 0.4255 0.9354 28 1 -0.3633 0.5975 -0.8362 29 1 -0.3174 3.2210 0.4099 30 1 2.0438 -2.6722 -2.1494 31 1 0.3601 -2.1164 -1.9674 32 1 -1.3799 -3.7635 -1.0777 33 1 -0.3027 -4.2180 0.2643 34 1 -0.9260 -5.4678 -0.8396 35 1 -0.5490 -3.8917 -3.4415 36 1 1.1204 -4.4166 -3.7666 37 1 -0.0857 -5.5918 -3.1900 38 1 3.1655 -6.7805 0.0574 39 1 4.3294 -6.3275 2.1748 40 1 4.1422 -4.1108 3.2330 41 1 2.7910 -2.3517 2.1725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334720536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:11 Heat of formation + Delta-G solvation = -52.418673 kcal Electronic energy + Delta-G solvation = -24098.774479 eV Core-core repulsion = 20750.656953 eV Total energy + Delta-G solvation = -3348.117526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27830 -40.14759 -38.76938 -36.78701 -35.70239 -33.77601 -33.26095 -31.14605 -29.61683 -28.36461 -28.25035 -26.70239 -25.28260 -23.75629 -23.40067 -20.97116 -19.81506 -18.98894 -18.53889 -18.22386 -17.29086 -16.62854 -16.52864 -16.16656 -15.90242 -15.72099 -15.08662 -15.05220 -14.81481 -14.35103 -14.16501 -13.87510 -13.79161 -13.51353 -13.19417 -13.10682 -12.97389 -12.84210 -12.81957 -12.68947 -12.47193 -12.35116 -12.21532 -12.15117 -11.81495 -11.59768 -11.39228 -11.06067 -10.27414 -9.89931 -9.69192 -9.06869 -8.27227 -5.94117 0.40921 0.52173 1.33547 1.37991 1.50164 1.94852 2.21812 2.27841 2.76487 3.07014 3.09685 3.50222 3.66694 3.70192 3.87869 3.94876 4.05301 4.19812 4.22518 4.32071 4.45666 4.54738 4.59605 4.62911 4.71548 4.75695 4.85885 4.86943 4.97023 5.06368 5.10730 5.14302 5.21250 5.30082 5.40557 5.41149 5.47337 5.57407 5.66912 5.91580 6.01580 6.45053 6.53705 7.13745 7.44750 7.99695 8.64114 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.005469 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.092511 B = 5118.829018 C = 6033.141816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.460 5.460 3 C -0.341 4.341 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.896 5.896 7 Si 0.991 3.009 8 H -0.268 1.268 9 H -0.268 1.268 10 H -0.279 1.279 11 C 0.440 3.560 12 O -0.629 6.629 13 C -0.048 4.048 14 H 0.107 0.893 15 C -0.129 4.129 16 C 0.113 3.887 17 C -0.172 4.172 18 C -0.133 4.133 19 O -0.317 6.317 20 C 0.126 3.874 21 C -0.162 4.162 22 C -0.081 4.081 23 C -0.164 4.164 24 C -0.078 4.078 25 C -0.152 4.152 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.272 0.728 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.138 0.862 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -14.736 -1.951 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.178 5.178 3 C -0.469 4.469 4 H 0.091 0.909 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.815 3.185 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.204 1.204 11 C 0.230 3.770 12 O -0.516 6.516 13 C -0.069 4.069 14 H 0.124 0.876 15 C -0.168 4.168 16 C 0.075 3.925 17 C -0.229 4.229 18 C -0.190 4.190 19 O -0.232 6.232 20 C 0.080 3.920 21 C -0.180 4.180 22 C -0.098 4.098 23 C -0.182 4.182 24 C -0.097 4.097 25 C -0.153 4.153 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.156 0.844 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.091 -14.692 -2.025 15.385 hybrid contribution 0.511 1.752 0.216 1.838 sum -3.581 -12.940 -1.808 13.547 Atomic orbital electron populations 1.21724 0.78758 0.98346 1.03085 1.43936 1.07089 1.04572 1.62235 1.19717 0.92765 0.83973 1.50400 0.90904 1.26014 0.96789 1.02061 0.95506 1.70220 1.07522 1.28260 1.47552 0.84963 0.77817 0.77013 0.78719 1.19343 1.19278 1.20374 1.20439 0.87802 0.85381 0.83416 1.90484 1.16194 1.87564 1.57393 1.20043 0.98418 0.90319 0.98117 0.87568 1.22193 1.02340 0.98468 0.93751 1.22118 0.85844 0.86843 0.97664 1.22421 0.97122 1.04353 0.99048 1.21810 1.02604 1.04188 0.90353 1.85961 1.48373 1.53601 1.35229 1.18802 0.94703 0.92352 0.86098 1.20868 1.01123 0.98951 0.97054 1.21256 0.97616 0.96886 0.94062 1.21244 1.01136 0.93917 1.01917 1.20907 0.95901 0.98228 0.94636 1.19473 1.04268 0.93785 0.97768 0.91933 0.92431 0.92811 0.91727 0.92955 0.88329 0.88799 0.93228 0.89906 0.88271 0.92238 0.89759 0.83079 0.81812 0.84367 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.55 8.70 127.77 1.11 6.66 16 2 N -0.46 -24.35 3.03 -658.89 -1.99 -26.34 16 3 C -0.34 -19.77 9.55 84.04 0.80 -18.97 16 4 H 0.07 4.57 7.20 -2.91 -0.02 4.55 16 5 C 0.00 -0.15 5.42 84.93 0.46 0.31 16 6 N -0.90 -46.58 9.54 21.66 0.21 -46.37 16 7 Si 0.99 42.97 29.56 68.60 2.03 45.00 16 8 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.44 22.47 5.90 87.66 0.52 22.99 16 12 O -0.63 -37.26 14.72 -3.06 -0.05 -37.31 16 13 C -0.05 -1.88 1.23 -12.24 -0.02 -1.89 16 14 H 0.11 3.81 5.07 -2.39 -0.01 3.80 16 15 C -0.13 -4.32 4.32 30.75 0.13 -4.18 16 16 C 0.11 2.95 1.13 -10.66 -0.01 2.94 16 17 C -0.17 -3.78 8.14 71.98 0.59 -3.19 16 18 C -0.13 -2.57 8.88 71.98 0.64 -1.93 16 19 O -0.32 -9.78 9.68 -91.85 -0.89 -10.67 16 20 C 0.13 4.25 6.02 22.52 0.14 4.38 16 21 C -0.16 -4.56 9.94 22.42 0.22 -4.34 16 22 C -0.08 -2.09 10.04 22.22 0.22 -1.87 16 23 C -0.16 -5.15 10.04 22.25 0.22 -4.92 16 24 C -0.08 -3.09 8.34 22.30 0.19 -2.91 16 25 C -0.15 -5.86 4.54 -19.75 -0.09 -5.95 16 26 H 0.06 2.26 4.97 -2.39 -0.01 2.25 16 27 H 0.06 2.77 6.91 -2.39 -0.02 2.75 16 28 H 0.05 2.50 7.22 -2.38 -0.02 2.49 16 29 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 30 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 31 H 0.10 2.97 7.81 -2.38 -0.02 2.95 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.27 5.88 -2.39 -0.01 1.25 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.09 4.09 7.16 -2.91 -0.02 4.07 16 Total: -1.00 -70.83 323.54 5.46 -65.37 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.03 Total: 23.18 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 5.13 Total: -12.87 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.79 Total: -72.71 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.93 Total: -47.97 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.83 5.46 -65.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334720536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.950 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds