Wall clock time and date at job start Tue Mar 31 2020 07:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.52080 * 2 1 4 4 O 1.21283 * 119.99736 * 240.12021 * 3 2 1 5 5 N 1.34775 * 119.99794 * 60.12709 * 3 2 1 6 6 C 1.39942 * 119.99425 * 174.68378 * 5 3 2 7 7 C 1.39295 * 119.94174 * 145.43534 * 6 5 3 8 8 C 1.38488 * 120.42438 * 179.75735 * 7 6 5 9 9 C 1.37681 * 120.32413 * 0.52318 * 8 7 6 10 10 C 1.40743 * 119.88159 * 359.73828 * 9 8 7 11 11 C 1.41416 * 120.20729 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99609 * 205.20156 * 11 10 9 13 13 C 1.39931 * 120.00077 * 25.20334 * 11 10 9 14 14 N 1.30828 * 119.99947 * 16.78903 * 13 11 10 15 15 Si 1.86795 * 120.00160 * 196.78873 * 13 11 10 16 16 H 1.48502 * 109.47146 * 89.99990 * 15 13 11 17 17 H 1.48500 * 109.47199 * 210.00365 * 15 13 11 18 18 H 1.48503 * 109.46871 * 329.99841 * 15 13 11 19 19 C 1.38238 * 119.95096 * 325.71106 * 6 5 3 20 20 C 1.53174 * 109.57223 * 239.84237 * 2 1 3 21 21 C 1.53182 * 109.03385 * 183.08089 * 20 2 1 22 22 C 1.53092 * 109.16134 * 56.98323 * 21 20 2 23 23 O 1.42898 * 109.41655 * 302.38970 * 22 21 20 24 24 C 1.42909 * 114.09784 * 61.15801 * 23 22 21 25 25 H 1.09004 * 109.46875 * 60.00074 * 1 2 3 26 26 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47222 * 300.00342 * 1 2 3 28 28 H 0.96993 * 120.00097 * 354.95737 * 5 3 2 29 29 H 1.07999 * 119.78697 * 0.02562 * 7 6 5 30 30 H 1.08008 * 119.83452 * 180.28215 * 8 7 6 31 31 H 1.08001 * 120.05851 * 179.76204 * 9 8 7 32 32 H 0.96997 * 120.00591 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.16028 * 359.96325 * 19 6 5 34 34 H 1.09005 * 109.54793 * 302.95022 * 20 2 1 35 35 H 1.08996 * 109.54644 * 63.21825 * 20 2 1 36 36 H 1.08998 * 109.52677 * 297.07791 * 21 20 2 37 37 H 1.09005 * 109.57435 * 176.91619 * 21 20 2 38 38 H 1.08998 * 109.48080 * 182.40395 * 22 21 20 39 39 H 1.09003 * 109.48425 * 62.37406 * 22 21 20 40 40 H 1.09003 * 109.48346 * 178.86234 * 24 23 22 41 41 H 1.08996 * 109.47786 * 58.82532 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7294 1.8171 -0.9107 5 7 1.7108 2.2498 1.0121 6 6 2.2675 3.5324 1.0702 7 6 1.5170 4.5940 1.5700 8 6 2.0597 5.8664 1.6368 9 6 3.3444 6.0980 1.1994 10 6 4.1128 5.0360 0.6869 11 6 5.4330 5.2661 0.2352 12 1 5.8733 4.6112 -0.5020 13 6 6.1687 6.3424 0.7436 14 7 5.7878 6.9317 1.8478 15 14 7.6947 6.9376 -0.1543 16 1 7.3142 7.9838 -1.1372 17 1 8.6558 7.5048 0.8253 18 1 8.3273 5.7973 -0.8649 19 6 3.5593 3.7448 0.6263 20 6 2.0431 -0.7251 -1.2479 21 6 3.5729 -0.7855 -1.1969 22 6 4.0056 -1.4794 0.0973 23 8 3.4695 -0.7724 1.2175 24 6 2.0415 -0.7242 1.2480 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.0958 1.9562 1.7023 29 1 0.5068 4.4230 1.9117 30 1 1.4707 6.6818 2.0302 31 1 3.7621 7.0927 1.2498 32 1 6.2980 7.6775 2.2004 33 1 4.1406 2.9230 0.2350 34 1 1.6389 -1.7370 -1.2738 35 1 1.7292 -0.1827 -2.1397 36 1 3.9785 0.2260 -1.2211 37 1 3.9449 -1.3477 -2.0535 38 1 5.0938 -1.4872 0.1593 39 1 3.6338 -2.5040 0.1023 40 1 1.7148 -0.1880 2.1390 41 1 1.6440 -1.7389 1.2681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334738721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:54 Heat of formation + Delta-G solvation = -71.248565 kcal Electronic energy + Delta-G solvation = -23543.705598 eV Core-core repulsion = 20194.771546 eV Total energy + Delta-G solvation = -3348.934052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72239 -38.46753 -36.97834 -34.50231 -34.42675 -33.09233 -31.91079 -29.76699 -28.04804 -27.06921 -25.27337 -25.09454 -23.52084 -21.85803 -20.93841 -20.38131 -18.92115 -17.66801 -16.76581 -16.15105 -15.61424 -15.52303 -15.12782 -14.95706 -14.55821 -14.29561 -14.03396 -13.96592 -13.06608 -12.87793 -12.66007 -12.62731 -12.37296 -12.17802 -11.99890 -11.86357 -11.58323 -11.19736 -11.09977 -10.96731 -10.82786 -10.63889 -10.50035 -10.41017 -10.00016 -9.60490 -9.54471 -9.21649 -8.97848 -8.80201 -7.39454 -6.85501 -6.65774 -4.28294 2.65034 2.88706 3.12556 3.17508 3.24632 3.42184 3.61979 3.93947 4.00801 4.45615 4.64298 4.70426 4.75806 5.00140 5.07805 5.16558 5.30531 5.38249 5.48814 5.49269 5.59622 5.71776 5.77485 5.82178 5.90792 6.02964 6.16145 6.29429 6.44031 6.53412 6.86163 7.08355 7.11826 7.13975 7.17384 7.31108 7.62644 7.79637 8.03051 8.15408 8.24620 8.33397 8.69060 8.81690 8.99963 9.04598 10.26976 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.004815 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.924234 B = 5814.210778 C = 6721.171150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.525 3.475 4 O -0.512 6.512 5 N -0.665 5.665 6 C 0.153 3.847 7 C -0.263 4.263 8 C -0.093 4.093 9 C -0.173 4.173 10 C 0.119 3.881 11 C -0.458 4.458 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.796 5.796 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.205 4.205 20 C -0.093 4.093 21 C -0.169 4.169 22 C 0.060 3.940 23 O -0.373 6.373 24 C 0.075 3.925 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.395 0.605 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.279 0.721 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 -13.953 -1.294 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C 0.311 3.689 4 O -0.387 6.387 5 N -0.309 5.309 6 C 0.061 3.939 7 C -0.284 4.284 8 C -0.112 4.112 9 C -0.192 4.192 10 C 0.116 3.884 11 C -0.488 4.488 12 H 0.096 0.904 13 C -0.141 4.141 14 N -0.422 5.422 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.227 4.227 20 C -0.131 4.131 21 C -0.206 4.206 22 C -0.016 4.016 23 O -0.291 6.291 24 C -0.003 4.003 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.228 0.772 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.209 -13.440 -1.652 15.341 hybrid contribution 0.123 0.053 -0.105 0.170 sum -7.086 -13.387 -1.757 15.248 Atomic orbital electron populations 1.21782 0.92063 1.02762 1.03064 1.21549 0.97513 0.94133 0.99053 1.20093 0.80559 0.86338 0.81885 1.90672 1.36656 1.76153 1.35218 1.43413 1.46982 1.14193 1.26272 1.17431 0.92610 0.82218 1.01635 1.20036 0.98628 0.93000 1.16736 1.20449 0.95818 0.94736 1.00194 1.21334 0.92936 0.99655 1.05309 1.17502 0.92654 0.89787 0.88468 1.19579 0.97870 1.10074 1.21232 0.90426 1.25889 0.99222 0.95275 0.93733 1.69829 1.37919 1.18631 1.15806 0.86314 0.80655 0.79752 0.80000 1.19313 1.20376 1.18620 1.20962 0.93805 0.97269 1.10649 1.21395 0.96035 0.99146 0.96481 1.22406 0.96124 1.04515 0.97598 1.22627 0.99206 0.93850 0.85950 1.88031 1.19266 1.76479 1.45359 1.22599 0.82114 0.99294 0.96256 0.91503 0.91402 0.91847 0.77164 0.89438 0.89145 0.86376 0.91007 0.87604 0.91650 0.90664 0.88104 0.91172 0.88893 0.93653 0.88688 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.38 37.16 0.31 -1.02 16 2 C -0.12 -1.51 0.63 -155.52 -0.10 -1.61 16 3 C 0.53 9.48 5.63 -10.99 -0.06 9.42 16 4 O -0.51 -11.39 11.59 5.56 0.06 -11.32 16 5 N -0.67 -12.23 5.10 -9.91 -0.05 -12.28 16 6 C 0.15 3.55 6.25 -83.76 -0.52 3.03 16 7 C -0.26 -5.92 9.97 -39.10 -0.39 -6.31 16 8 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 9 C -0.17 -4.64 8.69 -38.84 -0.34 -4.97 16 10 C 0.12 3.35 5.57 -106.85 -0.59 2.75 16 11 C -0.46 -12.85 9.05 -37.74 -0.34 -13.19 16 12 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 13 C 0.08 1.98 5.16 -17.35 -0.09 1.89 16 14 N -0.80 -21.15 10.94 55.55 0.61 -20.55 16 15 Si 0.91 19.48 29.59 -169.99 -5.03 14.45 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 19 C -0.21 -5.48 8.39 -38.69 -0.32 -5.80 16 20 C -0.09 -1.13 4.46 -26.55 -0.12 -1.25 16 21 C -0.17 -2.27 5.81 -26.59 -0.15 -2.42 16 22 C 0.06 0.75 6.84 37.21 0.25 1.01 16 23 O -0.37 -5.62 10.45 -35.23 -0.37 -5.99 16 24 C 0.07 0.89 5.47 37.21 0.20 1.09 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 28 H 0.39 5.73 7.67 -40.82 -0.31 5.42 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 31 H 0.12 3.25 6.17 -52.49 -0.32 2.92 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.11 2.93 6.48 -52.49 -0.34 2.59 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 36 H 0.10 1.78 5.82 -51.93 -0.30 1.48 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.04 7.63 -51.93 -0.40 0.65 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -31.87 327.88 -8.33 -40.20 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.83 Total: 10.54 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.66 Total: -20.00 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.56 Total: -32.82 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.30 Total: -17.31 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.87 -8.33 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334738721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.050 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds