Wall clock time and date at job start Tue Mar 31 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.52080 * 2 1 4 4 O 1.21283 * 119.99736 * 240.12021 * 3 2 1 5 5 N 1.34775 * 119.99794 * 60.12709 * 3 2 1 6 6 C 1.39942 * 119.99425 * 174.68378 * 5 3 2 7 7 C 1.39295 * 119.94174 * 145.43534 * 6 5 3 8 8 C 1.38488 * 120.42438 * 179.75735 * 7 6 5 9 9 C 1.37681 * 120.32413 * 0.52318 * 8 7 6 10 10 C 1.40743 * 119.88159 * 359.73828 * 9 8 7 11 11 C 1.41416 * 120.20729 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99609 * 205.20156 * 11 10 9 13 13 C 1.39931 * 120.00077 * 25.20334 * 11 10 9 14 14 N 1.30828 * 119.99947 * 16.78903 * 13 11 10 15 15 Si 1.86795 * 120.00160 * 196.78873 * 13 11 10 16 16 H 1.48502 * 109.47146 * 89.99990 * 15 13 11 17 17 H 1.48500 * 109.47199 * 210.00365 * 15 13 11 18 18 H 1.48503 * 109.46871 * 329.99841 * 15 13 11 19 19 C 1.38238 * 119.95096 * 325.71106 * 6 5 3 20 20 C 1.53174 * 109.57223 * 239.84237 * 2 1 3 21 21 C 1.53182 * 109.03385 * 183.08089 * 20 2 1 22 22 C 1.53092 * 109.16134 * 56.98323 * 21 20 2 23 23 O 1.42898 * 109.41655 * 302.38970 * 22 21 20 24 24 C 1.42909 * 114.09784 * 61.15801 * 23 22 21 25 25 H 1.09004 * 109.46875 * 60.00074 * 1 2 3 26 26 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47222 * 300.00342 * 1 2 3 28 28 H 0.96993 * 120.00097 * 354.95737 * 5 3 2 29 29 H 1.07999 * 119.78697 * 0.02562 * 7 6 5 30 30 H 1.08008 * 119.83452 * 180.28215 * 8 7 6 31 31 H 1.08001 * 120.05851 * 179.76204 * 9 8 7 32 32 H 0.96997 * 120.00591 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.16028 * 359.96325 * 19 6 5 34 34 H 1.09005 * 109.54793 * 302.95022 * 20 2 1 35 35 H 1.08996 * 109.54644 * 63.21825 * 20 2 1 36 36 H 1.08998 * 109.52677 * 297.07791 * 21 20 2 37 37 H 1.09005 * 109.57435 * 176.91619 * 21 20 2 38 38 H 1.08998 * 109.48080 * 182.40395 * 22 21 20 39 39 H 1.09003 * 109.48425 * 62.37406 * 22 21 20 40 40 H 1.09003 * 109.48346 * 178.86234 * 24 23 22 41 41 H 1.08996 * 109.47786 * 58.82532 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7294 1.8171 -0.9107 5 7 1.7108 2.2498 1.0121 6 6 2.2675 3.5324 1.0702 7 6 1.5170 4.5940 1.5700 8 6 2.0597 5.8664 1.6368 9 6 3.3444 6.0980 1.1994 10 6 4.1128 5.0360 0.6869 11 6 5.4330 5.2661 0.2352 12 1 5.8733 4.6112 -0.5020 13 6 6.1687 6.3424 0.7436 14 7 5.7878 6.9317 1.8478 15 14 7.6947 6.9376 -0.1543 16 1 7.3142 7.9838 -1.1372 17 1 8.6558 7.5048 0.8253 18 1 8.3273 5.7973 -0.8649 19 6 3.5593 3.7448 0.6263 20 6 2.0431 -0.7251 -1.2479 21 6 3.5729 -0.7855 -1.1969 22 6 4.0056 -1.4794 0.0973 23 8 3.4695 -0.7724 1.2175 24 6 2.0415 -0.7242 1.2480 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.0958 1.9562 1.7023 29 1 0.5068 4.4230 1.9117 30 1 1.4707 6.6818 2.0302 31 1 3.7621 7.0927 1.2498 32 1 6.2980 7.6775 2.2004 33 1 4.1406 2.9230 0.2350 34 1 1.6389 -1.7370 -1.2738 35 1 1.7292 -0.1827 -2.1397 36 1 3.9785 0.2260 -1.2211 37 1 3.9449 -1.3477 -2.0535 38 1 5.0938 -1.4872 0.1593 39 1 3.6338 -2.5040 0.1023 40 1 1.7148 -0.1880 2.1390 41 1 1.6440 -1.7389 1.2681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334738721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:53 Heat of formation + Delta-G solvation = -92.033101 kcal Electronic energy + Delta-G solvation = -23544.606883 eV Core-core repulsion = 20194.771546 eV Total energy + Delta-G solvation = -3349.835337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99393 -39.91862 -38.66445 -36.26148 -35.54220 -34.85697 -33.02277 -31.76428 -29.86509 -27.88982 -27.27793 -26.07318 -24.85270 -23.11077 -22.80936 -22.00020 -20.35275 -19.49807 -18.05611 -17.45849 -17.14204 -16.85048 -16.63874 -16.48551 -16.14232 -15.64631 -15.28158 -15.17493 -14.84367 -14.63078 -14.02985 -13.67982 -13.60274 -13.49164 -13.15390 -13.00847 -12.98633 -12.95295 -12.86253 -12.76025 -12.19967 -12.03076 -11.92583 -11.56621 -11.51470 -11.45209 -11.11149 -10.80538 -10.61494 -10.27569 -9.40941 -8.75626 -8.60992 -6.38712 0.86914 0.99377 1.33871 1.46919 1.47673 1.84019 2.18963 2.25270 2.71617 2.97690 3.48136 3.61102 3.73950 3.80842 3.97302 4.10792 4.24551 4.44529 4.47271 4.52597 4.62005 4.65731 4.68815 4.73257 4.85749 4.91858 5.00188 5.04157 5.08064 5.11215 5.19874 5.23664 5.25297 5.32251 5.48125 5.76361 5.86811 6.06361 6.10168 6.23982 6.34439 6.66042 6.68835 6.92346 7.00060 7.38059 8.32074 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.004815 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.924234 B = 5814.210778 C = 6721.171150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.515 3.485 4 O -0.562 6.562 5 N -0.658 5.658 6 C 0.159 3.841 7 C -0.252 4.252 8 C -0.091 4.091 9 C -0.199 4.199 10 C 0.088 3.912 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.039 3.961 14 N -0.822 5.822 15 Si 0.982 3.018 16 H -0.259 1.259 17 H -0.260 1.260 18 H -0.266 1.266 19 C -0.234 4.234 20 C -0.092 4.092 21 C -0.171 4.171 22 C 0.059 3.941 23 O -0.410 6.410 24 C 0.069 3.931 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.416 0.584 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.290 0.710 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -15.725 -0.458 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C 0.304 3.696 4 O -0.439 6.439 5 N -0.303 5.303 6 C 0.066 3.934 7 C -0.273 4.273 8 C -0.110 4.110 9 C -0.219 4.219 10 C 0.085 3.915 11 C -0.533 4.533 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.448 5.448 15 Si 0.802 3.198 16 H -0.183 1.183 17 H -0.184 1.184 18 H -0.191 1.191 19 C -0.255 4.255 20 C -0.130 4.130 21 C -0.208 4.208 22 C -0.017 4.017 23 O -0.330 6.330 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.254 0.746 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.515 -15.243 -0.785 17.986 hybrid contribution 0.720 0.524 -0.348 0.956 sum -8.795 -14.718 -1.133 17.183 Atomic orbital electron populations 1.21835 0.88920 1.05282 1.03268 1.21619 0.99786 0.89723 1.00080 1.21314 0.79277 0.88367 0.80629 1.90672 1.38588 1.77503 1.37160 1.43375 1.47090 1.12598 1.27286 1.17546 0.91471 0.84818 0.99575 1.20488 1.00157 0.91904 1.14750 1.20842 0.94826 0.96528 0.98767 1.21295 0.94493 0.98681 1.07396 1.17849 0.93335 0.90872 0.89438 1.19714 0.98975 1.12010 1.22604 0.92283 1.26689 1.02272 0.94528 0.94139 1.69854 1.39396 1.18991 1.16543 0.85222 0.76601 0.79004 0.78938 1.18323 1.18372 1.19052 1.20875 0.95667 0.96193 1.12810 1.21466 0.94877 1.01124 0.95540 1.22357 0.97441 1.01777 0.99268 1.22727 0.99147 0.95242 0.84565 1.87984 1.21430 1.77295 1.46250 1.22890 0.80627 1.01560 0.95686 0.92525 0.87720 0.90521 0.74591 0.84974 0.85806 0.87755 0.89962 0.90386 0.87317 0.92416 0.93556 0.89357 0.89604 0.89810 0.87989 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.38 71.98 0.60 -1.44 16 2 C -0.11 -2.52 0.63 -52.84 -0.03 -2.55 16 3 C 0.52 18.75 5.63 87.66 0.49 19.25 16 4 O -0.56 -26.58 11.59 -3.04 -0.04 -26.61 16 5 N -0.66 -23.75 5.10 -303.65 -1.55 -25.30 16 6 C 0.16 7.49 6.25 38.10 0.24 7.72 16 7 C -0.25 -10.93 9.97 22.58 0.23 -10.71 16 8 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 9 C -0.20 -11.06 8.69 22.75 0.20 -10.86 16 10 C 0.09 5.26 5.57 -21.31 -0.12 5.14 16 11 C -0.50 -30.36 9.05 23.46 0.21 -30.15 16 12 H 0.06 3.61 7.90 -2.91 -0.02 3.58 16 13 C 0.04 2.09 5.16 85.25 0.44 2.53 16 14 N -0.82 -45.09 10.94 21.82 0.24 -44.86 16 15 Si 0.98 41.33 29.59 68.60 2.03 43.36 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 C -0.23 -13.26 8.39 22.85 0.19 -13.07 16 20 C -0.09 -2.08 4.46 30.71 0.14 -1.94 16 21 C -0.17 -4.60 5.81 30.69 0.18 -4.42 16 22 C 0.06 1.41 6.84 72.01 0.49 1.91 16 23 O -0.41 -11.95 10.45 -148.98 -1.56 -13.51 16 24 C 0.07 1.41 5.47 72.01 0.39 1.81 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.96 7.47 -2.39 -0.02 0.94 16 28 H 0.42 11.07 7.67 -92.71 -0.71 10.36 16 29 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 31 H 0.10 5.99 6.17 -2.91 -0.02 5.97 16 32 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 33 H 0.08 4.75 6.48 -2.91 -0.02 4.74 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.06 1.49 8.02 -2.39 -0.02 1.48 16 36 H 0.05 1.77 5.82 -2.39 -0.01 1.76 16 37 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.90 7.63 -2.39 -0.02 1.88 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -77.21 327.88 3.33 -73.88 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.33 Total: 33.88 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 3.87 Total: -40.84 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.31 Total: -70.15 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.59 Total: -40.12 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -77.21 3.33 -73.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334738721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.155 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds