Wall clock time and date at job start Tue Mar 31 2020 06:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.82713 * 2 1 4 4 C 1.54391 * 109.82523 * 239.01888 * 2 1 3 5 5 C 1.55297 * 102.25224 * 261.84460 * 4 2 1 6 6 C 1.54942 * 100.94626 * 325.86850 * 5 4 2 7 7 H 1.09005 * 110.39256 * 277.48773 * 6 5 4 8 8 C 1.50698 * 110.31291 * 155.36318 * 6 5 4 9 9 O 1.21291 * 119.99888 * 247.83975 * 8 6 5 10 10 N 1.34776 * 120.00452 * 67.83032 * 8 6 5 11 11 C 1.39119 * 120.00286 * 175.55055 * 10 8 6 12 12 C 1.38648 * 120.28537 * 28.31588 * 11 10 8 13 13 C 1.38219 * 120.03358 * 179.72759 * 12 11 10 14 14 C 1.38866 * 120.61480 * 0.29704 * 13 12 11 15 15 C 1.36463 * 120.58230 * 0.02562 * 14 13 12 16 16 C 1.40735 * 119.93914 * 359.97438 * 15 14 13 17 17 C 1.41074 * 120.30003 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00042 * 208.11248 * 17 16 15 19 19 C 1.39948 * 119.99845 * 28.11577 * 17 16 15 20 20 N 1.30851 * 120.00266 * 12.14111 * 19 17 16 21 21 Si 1.86803 * 120.00190 * 192.13589 * 19 17 16 22 22 H 1.48501 * 109.46888 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47283 * 119.99995 * 21 19 17 24 24 H 1.48497 * 109.47155 * 240.00561 * 21 19 17 25 25 O 1.43240 * 109.83027 * 120.89096 * 2 1 3 26 26 H 1.09008 * 109.46615 * 300.56871 * 1 2 3 27 27 H 1.08995 * 109.47533 * 60.56272 * 1 2 3 28 28 H 1.08993 * 109.47669 * 180.57110 * 1 2 3 29 29 H 1.08998 * 109.46913 * 179.43855 * 3 2 1 30 30 H 1.08999 * 109.46780 * 299.43690 * 3 2 1 31 31 H 1.08997 * 109.46904 * 59.43542 * 3 2 1 32 32 H 1.08994 * 110.84740 * 20.03993 * 4 2 1 33 33 H 1.08998 * 110.84181 * 143.65641 * 4 2 1 34 34 H 1.09007 * 111.12555 * 207.94619 * 5 4 2 35 35 H 1.09001 * 111.12676 * 83.79405 * 5 4 2 36 36 H 0.96999 * 119.99436 * 355.55056 * 10 8 6 37 37 H 1.07996 * 119.98153 * 0.02562 * 12 11 10 38 38 H 1.07995 * 119.69514 * 180.27579 * 13 12 11 39 39 H 1.08000 * 119.71118 * 179.97438 * 14 13 12 40 40 H 1.07998 * 120.03498 * 180.02562 * 15 14 13 41 41 H 0.96998 * 120.00064 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 2.0536 -0.7476 -1.2452 5 6 2.3679 -2.1576 -0.6751 6 6 2.8406 -1.7977 0.7559 7 1 3.8901 -1.5030 0.7464 8 6 2.6349 -2.9667 1.6843 9 8 1.8094 -2.8995 2.5704 10 7 3.3681 -4.0871 1.5300 11 6 3.2447 -5.1303 2.4421 12 6 2.0530 -5.3265 3.1230 13 6 1.9344 -6.3680 4.0239 14 6 3.0028 -7.2225 4.2617 15 6 4.1893 -7.0485 3.6104 16 6 4.3365 -5.9957 2.6881 17 6 5.5598 -5.8085 2.0108 18 1 5.8488 -4.8216 1.6809 19 6 6.3987 -6.9017 1.7665 20 7 5.9555 -8.1197 1.9464 21 14 8.1513 -6.6222 1.1834 22 1 8.4051 -5.1643 1.0594 23 1 9.0990 -7.2074 2.1655 24 1 8.3430 -7.2726 -0.1377 25 8 2.0159 -0.6918 1.1563 26 1 -0.3633 0.5227 0.8849 27 1 -0.3634 0.5050 -0.8949 28 1 -0.3634 -1.0275 0.0102 29 1 3.1389 1.4325 0.0101 30 1 1.6970 1.9523 -0.8950 31 1 1.6806 1.9583 0.8849 32 1 1.2850 -0.8033 -2.0160 33 1 2.9570 -0.2746 -1.6301 34 1 3.1634 -2.6420 -1.2415 35 1 1.4728 -2.7791 -0.6485 36 1 3.9817 -4.1659 0.7829 37 1 1.2155 -4.6681 2.9458 38 1 1.0022 -6.5185 4.5479 39 1 2.8942 -8.0314 4.9690 40 1 5.0144 -7.7186 3.8018 41 1 6.5371 -8.8773 1.7774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335135553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:32 Heat of formation + Delta-G solvation = -67.110515 kcal Electronic energy + Delta-G solvation = -23103.933433 eV Core-core repulsion = 19755.178820 eV Total energy + Delta-G solvation = -3348.754612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.36844 -38.93458 -37.00532 -33.80714 -33.67313 -33.19390 -32.00049 -29.60617 -28.67563 -27.44630 -26.42632 -25.09579 -22.60291 -21.60473 -20.76413 -20.03082 -19.32397 -17.47499 -17.00405 -16.77395 -15.76232 -15.31292 -15.21159 -14.59525 -14.44760 -14.03973 -13.69852 -13.48277 -13.20719 -13.02039 -12.70306 -12.54305 -12.22127 -12.19574 -11.91866 -11.74327 -11.68878 -11.56669 -11.31814 -11.17738 -11.00725 -10.85625 -10.71567 -10.49690 -10.12497 -9.73300 -9.67214 -9.28726 -9.20894 -8.59022 -7.37110 -6.98755 -6.67752 -4.41325 2.60580 2.85586 3.02940 3.06465 3.19380 3.22391 3.56380 3.87077 4.10546 4.37954 4.62411 4.63651 4.77843 4.98854 5.03318 5.05277 5.41730 5.45341 5.46561 5.55823 5.58343 5.67101 5.73818 5.77746 5.82744 5.96230 6.06164 6.21746 6.36201 6.54103 6.62445 6.90759 7.04242 7.08204 7.18741 7.29956 7.65308 7.72940 7.98936 8.11410 8.12481 8.43446 8.56067 8.81370 8.84006 9.04060 10.15775 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.004656 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.196004 B = 6011.915375 C = 7246.644279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C -0.153 4.153 4 C -0.144 4.144 5 C -0.146 4.146 6 C 0.067 3.933 7 H 0.094 0.906 8 C 0.496 3.504 9 O -0.520 6.520 10 N -0.633 5.633 11 C 0.017 3.983 12 C -0.097 4.097 13 C -0.222 4.222 14 C -0.116 4.116 15 C -0.147 4.147 16 C 0.100 3.900 17 C -0.469 4.469 18 H 0.075 0.925 19 C 0.077 3.923 20 N -0.797 5.797 21 Si 0.908 3.092 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.275 1.275 25 O -0.342 6.342 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.403 0.597 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 11.294 -8.622 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.057 3.943 3 C -0.210 4.210 4 C -0.181 4.181 5 C -0.184 4.184 6 C 0.005 3.995 7 H 0.111 0.889 8 C 0.281 3.719 9 O -0.397 6.397 10 N -0.276 5.276 11 C -0.076 4.076 12 C -0.117 4.117 13 C -0.242 4.242 14 C -0.135 4.135 15 C -0.167 4.167 16 C 0.096 3.904 17 C -0.499 4.499 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.423 5.423 21 Si 0.733 3.267 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.200 1.200 25 O -0.260 6.260 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.238 0.762 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.640 11.210 -7.822 14.145 hybrid contribution 1.257 -0.160 -0.804 1.500 sum -2.383 11.050 -8.626 14.219 Atomic orbital electron populations 1.22063 0.93985 1.02816 1.02052 1.22153 0.94441 0.92491 0.85245 1.22091 1.01555 0.95062 1.02299 1.23209 1.02148 0.95003 0.97772 1.23249 1.03132 0.97862 0.94182 1.22802 0.96280 0.87202 0.93172 0.88876 1.20333 0.82615 0.83330 0.85574 1.90625 1.33896 1.81482 1.33660 1.42782 1.42197 1.14458 1.28162 1.17795 0.94709 0.95283 0.99843 1.20906 0.96101 0.97276 0.97444 1.20356 0.98562 0.99812 1.05485 1.20493 0.94595 0.98401 1.00030 1.20930 0.97258 1.00803 0.97660 1.17406 0.90510 0.91535 0.90930 1.19334 1.02156 0.94825 1.33616 0.90666 1.25846 1.00000 0.94584 0.93630 1.69813 1.36539 0.99111 1.36822 0.86264 0.81947 0.79723 0.78785 1.18543 1.19757 1.20017 1.88573 1.66976 1.41486 1.29002 0.91825 0.91775 0.91956 0.92132 0.91602 0.91815 0.89725 0.90136 0.88939 0.89723 0.76159 0.86279 0.89209 0.89403 0.85996 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.73 37.16 0.32 -1.33 16 2 C 0.10 1.12 1.27 -89.89 -0.11 1.01 16 3 C -0.15 -1.47 8.75 37.16 0.33 -1.15 16 4 C -0.14 -1.37 6.09 -24.78 -0.15 -1.52 16 5 C -0.15 -1.71 6.56 -24.49 -0.16 -1.87 16 6 C 0.07 1.01 3.86 -26.86 -0.10 0.91 16 7 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 8 C 0.50 9.86 7.05 -10.99 -0.08 9.78 16 9 O -0.52 -12.39 13.60 -13.78 -0.19 -12.58 16 10 N -0.63 -13.01 5.03 -9.47 -0.05 -13.05 16 11 C 0.02 0.43 6.44 -83.17 -0.54 -0.11 16 12 C -0.10 -2.41 8.75 -39.44 -0.35 -2.75 16 13 C -0.22 -5.31 10.04 -39.36 -0.39 -5.70 16 14 C -0.12 -2.80 9.97 -39.99 -0.40 -3.20 16 15 C -0.15 -3.79 8.61 -39.28 -0.34 -4.13 16 16 C 0.10 2.59 5.57 -106.65 -0.59 2.00 16 17 C -0.47 -11.63 8.34 -37.87 -0.32 -11.95 16 18 H 0.08 1.76 7.29 -52.49 -0.38 1.37 16 19 C 0.08 1.82 5.23 -17.33 -0.09 1.73 16 20 N -0.80 -19.79 10.87 55.55 0.60 -19.19 16 21 Si 0.91 17.76 29.58 -169.99 -5.03 12.73 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 O -0.34 -5.52 9.93 -54.55 -0.54 -6.06 16 26 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.68 7.82 -51.93 -0.41 0.27 16 33 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 34 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 36 H 0.40 7.30 7.74 -40.82 -0.32 6.99 16 37 H 0.12 2.96 5.71 -52.49 -0.30 2.66 16 38 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.22 6.21 -52.49 -0.33 2.89 16 41 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -30.30 335.79 -9.03 -39.32 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.92 Total: 12.05 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -2.97 Total: -18.28 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.56 Total: -32.25 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.73 Total: -18.64 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.30 -9.03 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335135553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.786 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds