Wall clock time and date at job start Tue Mar 31 2020 06:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.89392 * 2 1 4 4 C 1.54378 * 109.82606 * 120.93153 * 2 1 3 5 5 C 1.55303 * 102.25282 * 98.16070 * 4 2 1 6 6 C 1.54952 * 100.94360 * 34.13004 * 5 4 2 7 7 H 1.08993 * 110.31430 * 82.57224 * 6 5 4 8 8 C 1.50700 * 110.31053 * 204.64697 * 6 5 4 9 9 O 1.21273 * 120.00365 * 114.99514 * 8 6 5 10 10 N 1.34782 * 119.99669 * 294.99708 * 8 6 5 11 11 C 1.39123 * 120.00021 * 185.61495 * 10 8 6 12 12 C 1.38647 * 120.28511 * 331.27625 * 11 10 8 13 13 C 1.38220 * 120.03413 * 180.28135 * 12 11 10 14 14 C 1.38863 * 120.61373 * 359.76508 * 13 12 11 15 15 C 1.36464 * 120.58332 * 359.95268 * 14 13 12 16 16 C 1.40735 * 119.93640 * 0.02805 * 15 14 13 17 17 C 1.41078 * 120.29863 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99632 * 155.46537 * 17 16 15 19 19 C 1.39953 * 119.99675 * 335.46932 * 17 16 15 20 20 N 1.30846 * 120.00235 * 331.13000 * 19 17 16 21 21 Si 1.86801 * 119.99774 * 151.13466 * 19 17 16 22 22 H 1.48503 * 109.46972 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47390 * 59.99482 * 21 19 17 24 24 H 1.48500 * 109.46979 * 299.99637 * 21 19 17 25 25 O 1.43238 * 109.82873 * 239.06401 * 2 1 3 26 26 H 1.08992 * 109.46939 * 299.06920 * 1 2 3 27 27 H 1.09003 * 109.46970 * 59.06940 * 1 2 3 28 28 H 1.08998 * 109.47091 * 179.06319 * 1 2 3 29 29 H 1.09000 * 109.46699 * 180.93496 * 3 2 1 30 30 H 1.08999 * 109.47158 * 300.93168 * 3 2 1 31 31 H 1.08994 * 109.47106 * 60.93091 * 3 2 1 32 32 H 1.08996 * 110.85394 * 339.96395 * 4 2 1 33 33 H 1.09010 * 111.01696 * 216.42170 * 4 2 1 34 34 H 1.08996 * 111.12585 * 276.21228 * 5 4 2 35 35 H 1.08999 * 111.13121 * 152.04698 * 5 4 2 36 36 H 0.97004 * 119.99605 * 5.60915 * 10 8 6 37 37 H 1.07997 * 119.98169 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.69420 * 179.74125 * 13 12 11 39 39 H 1.08002 * 119.70948 * 179.97438 * 14 13 12 40 40 H 1.07995 * 120.03242 * 180.02562 * 15 14 13 41 41 H 0.96997 * 120.00125 * 353.74567 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7465 1.2457 5 6 2.3681 -2.1569 0.6768 6 6 2.8408 -1.7981 -0.7545 7 1 3.8905 -1.5046 -0.7439 8 6 2.6350 -2.9679 -1.6820 9 8 1.8465 -2.8829 -2.5995 10 7 3.3273 -4.1086 -1.4918 11 6 3.2257 -5.1458 -2.4134 12 6 2.0654 -5.3122 -3.1539 13 6 1.9680 -6.3480 -4.0639 14 6 3.0265 -7.2271 -4.2507 15 6 4.1823 -7.0832 -3.5396 16 6 4.3075 -6.0367 -2.6069 17 6 5.4990 -5.8806 -1.8680 18 1 5.7650 -4.9122 -1.4706 19 6 6.3364 -6.9806 -1.6500 20 7 5.8319 -8.1867 -1.5978 21 14 8.1744 -6.7268 -1.4334 22 1 8.8333 -8.0400 -1.2173 23 1 8.4183 -5.8518 -0.2587 24 1 8.7326 -6.0868 -2.6516 25 8 2.0160 -0.6927 -1.1558 26 1 -0.3633 0.4993 0.8982 27 1 -0.3633 0.5282 -0.8815 28 1 -0.3633 -1.0275 -0.0168 29 1 3.1406 1.4307 -0.0168 30 1 1.6776 1.9601 -0.8815 31 1 1.7049 1.9503 0.8982 32 1 1.2851 -0.8016 2.0166 33 1 2.9566 -0.2745 1.6335 34 1 1.4731 -2.7785 0.6506 35 1 3.1637 -2.6408 1.2434 36 1 3.8963 -4.2063 -0.7123 37 1 1.2354 -4.6351 -3.0159 38 1 1.0600 -6.4750 -4.6348 39 1 2.9345 -8.0316 -4.9654 40 1 5.0001 -7.7718 -3.6922 41 1 4.8702 -8.3115 -1.6191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335135554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:34 Heat of formation + Delta-G solvation = -73.676379 kcal Electronic energy + Delta-G solvation = -23139.058580 eV Core-core repulsion = 19790.019250 eV Total energy + Delta-G solvation = -3349.039330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41542 -39.01584 -37.19236 -33.96885 -33.85065 -33.22671 -32.03977 -29.38556 -28.78759 -27.47597 -26.44590 -24.97600 -22.65115 -21.64814 -20.92432 -20.09091 -19.40881 -18.03984 -17.11764 -16.80071 -15.81948 -15.34130 -14.91861 -14.58116 -14.45527 -14.14460 -13.79103 -13.56201 -13.27602 -13.23340 -12.76621 -12.48486 -12.27784 -12.20990 -12.04309 -11.89807 -11.75658 -11.59265 -11.46845 -11.06634 -10.90225 -10.75920 -10.70516 -10.46380 -10.32082 -9.75832 -9.71341 -9.34169 -8.99231 -8.66149 -7.63073 -7.40583 -6.95377 -4.47297 2.55120 2.80255 3.10107 3.15184 3.22745 3.31617 3.47101 3.94671 4.05913 4.34023 4.51216 4.60786 4.74205 4.94742 4.99697 5.01636 5.36010 5.42303 5.43725 5.49748 5.52868 5.55676 5.71109 5.74765 5.79446 5.92585 6.03640 6.18779 6.22514 6.37508 6.50184 6.80754 6.96091 7.03378 7.14963 7.38267 7.53607 7.70517 7.78008 7.93062 8.02226 8.22707 8.37340 8.67199 8.76362 8.95824 9.95446 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.004611 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.879218 B = 6070.487727 C = 7226.644402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C -0.153 4.153 4 C -0.144 4.144 5 C -0.147 4.147 6 C 0.067 3.933 7 H 0.094 0.906 8 C 0.496 3.504 9 O -0.520 6.520 10 N -0.632 5.632 11 C 0.007 3.993 12 C -0.082 4.082 13 C -0.241 4.241 14 C -0.093 4.093 15 C -0.208 4.208 16 C 0.091 3.909 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.045 3.955 20 N -0.789 5.789 21 Si 1.061 2.939 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.274 1.274 25 O -0.342 6.342 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 11.836 8.486 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.057 3.943 3 C -0.210 4.210 4 C -0.181 4.181 5 C -0.185 4.185 6 C 0.006 3.994 7 H 0.112 0.888 8 C 0.282 3.718 9 O -0.397 6.397 10 N -0.275 5.275 11 C -0.087 4.087 12 C -0.102 4.102 13 C -0.261 4.261 14 C -0.112 4.112 15 C -0.228 4.228 16 C 0.087 3.913 17 C -0.559 4.559 18 H 0.092 0.908 19 C -0.179 4.179 20 N -0.411 5.411 21 Si 0.885 3.115 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.200 1.200 25 O -0.260 6.260 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.238 0.762 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.423 11.142 7.845 13.841 hybrid contribution -1.076 0.677 0.258 1.297 sum -3.500 11.819 8.103 14.752 Atomic orbital electron populations 1.22063 0.93955 1.02807 1.02081 1.22155 0.94441 0.92515 0.85218 1.22092 1.01572 0.95031 1.02312 1.23208 1.02198 0.94954 0.97765 1.23260 1.03097 0.97925 0.94227 1.22793 0.96337 0.87174 0.93101 0.88801 1.20346 0.82257 0.83342 0.85894 1.90617 1.34922 1.82056 1.32079 1.42751 1.46024 1.13430 1.25337 1.17638 0.95123 0.95878 1.00020 1.20966 0.96155 0.96839 0.96243 1.20286 0.99364 1.00289 1.06130 1.20399 0.94349 0.97773 0.98643 1.20693 0.98189 1.03034 1.00919 1.17430 0.90432 0.91685 0.91744 1.20278 1.04887 0.98316 1.32441 0.90810 1.26943 1.07592 0.91727 0.91593 1.70457 1.18570 1.23955 1.28099 0.83694 0.72941 0.77027 0.77879 1.19855 1.20172 1.19976 1.88575 1.66931 1.41491 1.29024 0.91728 0.91812 0.91987 0.92110 0.91812 0.91570 0.89720 0.90095 0.89762 0.88950 0.76216 0.86132 0.89046 0.89256 0.87519 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.73 37.16 0.32 -1.32 16 2 C 0.10 1.12 1.27 -89.89 -0.11 1.01 16 3 C -0.15 -1.47 8.75 37.16 0.33 -1.14 16 4 C -0.14 -1.37 6.08 -24.79 -0.15 -1.52 16 5 C -0.15 -1.71 6.55 -24.48 -0.16 -1.87 16 6 C 0.07 1.02 3.87 -26.85 -0.10 0.91 16 7 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 8 C 0.50 9.89 7.06 -10.98 -0.08 9.81 16 9 O -0.52 -12.42 13.59 -13.79 -0.19 -12.61 16 10 N -0.63 -13.01 5.00 -9.48 -0.05 -13.05 16 11 C 0.01 0.17 6.44 -83.17 -0.54 -0.37 16 12 C -0.08 -2.02 8.76 -39.44 -0.35 -2.37 16 13 C -0.24 -5.70 10.04 -39.36 -0.39 -6.10 16 14 C -0.09 -2.20 9.96 -39.99 -0.40 -2.60 16 15 C -0.21 -5.30 8.01 -39.28 -0.31 -5.61 16 16 C 0.09 2.34 5.31 -106.65 -0.57 1.77 16 17 C -0.53 -13.13 8.31 -37.86 -0.31 -13.44 16 18 H 0.07 1.73 7.27 -52.48 -0.38 1.35 16 19 C 0.04 1.07 4.85 -17.33 -0.08 0.99 16 20 N -0.79 -19.93 12.31 55.55 0.68 -19.24 16 21 Si 1.06 20.46 30.02 -169.99 -5.10 15.36 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -4.97 7.11 56.52 0.40 -4.56 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 O -0.34 -5.52 9.92 -54.58 -0.54 -6.06 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.67 7.82 -51.93 -0.41 0.27 16 33 H 0.08 0.65 7.86 -51.92 -0.41 0.25 16 34 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.40 7.33 7.69 -40.82 -0.31 7.02 16 37 H 0.12 2.99 5.70 -52.49 -0.30 2.69 16 38 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 40 H 0.11 2.76 6.56 -52.49 -0.34 2.42 16 41 H 0.30 7.82 6.98 -40.82 -0.28 7.53 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -30.14 335.33 -8.93 -39.08 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.88 Total: 13.32 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.91 Total: -21.85 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.64 Total: -32.30 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.73 Total: -18.67 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.10 Total: 15.36 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.14 -8.93 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335135554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.601 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds