Wall clock time and date at job start Tue Mar 31 2020 06:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.89392 * 2 1 4 4 C 1.54378 * 109.82606 * 120.93153 * 2 1 3 5 5 C 1.55303 * 102.25282 * 98.16070 * 4 2 1 6 6 C 1.54952 * 100.94360 * 34.13004 * 5 4 2 7 7 H 1.08993 * 110.31430 * 82.57224 * 6 5 4 8 8 C 1.50700 * 110.31053 * 204.64697 * 6 5 4 9 9 O 1.21273 * 120.00365 * 114.99514 * 8 6 5 10 10 N 1.34782 * 119.99669 * 294.99708 * 8 6 5 11 11 C 1.39123 * 120.00021 * 185.61495 * 10 8 6 12 12 C 1.38647 * 120.28511 * 331.27625 * 11 10 8 13 13 C 1.38220 * 120.03413 * 180.28135 * 12 11 10 14 14 C 1.38863 * 120.61373 * 359.76508 * 13 12 11 15 15 C 1.36464 * 120.58332 * 359.95268 * 14 13 12 16 16 C 1.40735 * 119.93640 * 0.02805 * 15 14 13 17 17 C 1.41078 * 120.29863 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99632 * 155.46537 * 17 16 15 19 19 C 1.39953 * 119.99675 * 335.46932 * 17 16 15 20 20 N 1.30846 * 120.00235 * 331.13000 * 19 17 16 21 21 Si 1.86801 * 119.99774 * 151.13466 * 19 17 16 22 22 H 1.48503 * 109.46972 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47390 * 59.99482 * 21 19 17 24 24 H 1.48500 * 109.46979 * 299.99637 * 21 19 17 25 25 O 1.43238 * 109.82873 * 239.06401 * 2 1 3 26 26 H 1.08992 * 109.46939 * 299.06920 * 1 2 3 27 27 H 1.09003 * 109.46970 * 59.06940 * 1 2 3 28 28 H 1.08998 * 109.47091 * 179.06319 * 1 2 3 29 29 H 1.09000 * 109.46699 * 180.93496 * 3 2 1 30 30 H 1.08999 * 109.47158 * 300.93168 * 3 2 1 31 31 H 1.08994 * 109.47106 * 60.93091 * 3 2 1 32 32 H 1.08996 * 110.85394 * 339.96395 * 4 2 1 33 33 H 1.09010 * 111.01696 * 216.42170 * 4 2 1 34 34 H 1.08996 * 111.12585 * 276.21228 * 5 4 2 35 35 H 1.08999 * 111.13121 * 152.04698 * 5 4 2 36 36 H 0.97004 * 119.99605 * 5.60915 * 10 8 6 37 37 H 1.07997 * 119.98169 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.69420 * 179.74125 * 13 12 11 39 39 H 1.08002 * 119.70948 * 179.97438 * 14 13 12 40 40 H 1.07995 * 120.03242 * 180.02562 * 15 14 13 41 41 H 0.96997 * 120.00125 * 353.74567 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7465 1.2457 5 6 2.3681 -2.1569 0.6768 6 6 2.8408 -1.7981 -0.7545 7 1 3.8905 -1.5046 -0.7439 8 6 2.6350 -2.9679 -1.6820 9 8 1.8465 -2.8829 -2.5995 10 7 3.3273 -4.1086 -1.4918 11 6 3.2257 -5.1458 -2.4134 12 6 2.0654 -5.3122 -3.1539 13 6 1.9680 -6.3480 -4.0639 14 6 3.0265 -7.2271 -4.2507 15 6 4.1823 -7.0832 -3.5396 16 6 4.3075 -6.0367 -2.6069 17 6 5.4990 -5.8806 -1.8680 18 1 5.7650 -4.9122 -1.4706 19 6 6.3364 -6.9806 -1.6500 20 7 5.8319 -8.1867 -1.5978 21 14 8.1744 -6.7268 -1.4334 22 1 8.8333 -8.0400 -1.2173 23 1 8.4183 -5.8518 -0.2587 24 1 8.7326 -6.0868 -2.6516 25 8 2.0160 -0.6927 -1.1558 26 1 -0.3633 0.4993 0.8982 27 1 -0.3633 0.5282 -0.8815 28 1 -0.3633 -1.0275 -0.0168 29 1 3.1406 1.4307 -0.0168 30 1 1.6776 1.9601 -0.8815 31 1 1.7049 1.9503 0.8982 32 1 1.2851 -0.8016 2.0166 33 1 2.9566 -0.2745 1.6335 34 1 1.4731 -2.7785 0.6506 35 1 3.1637 -2.6408 1.2434 36 1 3.8963 -4.2063 -0.7123 37 1 1.2354 -4.6351 -3.0159 38 1 1.0600 -6.4750 -4.6348 39 1 2.9345 -8.0316 -4.9654 40 1 5.0001 -7.7718 -3.6922 41 1 4.8702 -8.3115 -1.6191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335135554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:34 Heat of formation + Delta-G solvation = -90.354110 kcal Electronic energy + Delta-G solvation = -23139.781781 eV Core-core repulsion = 19790.019250 eV Total energy + Delta-G solvation = -3349.762530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74019 -40.45724 -38.95343 -35.79657 -35.61651 -34.21382 -33.09373 -31.28400 -30.49409 -28.26124 -27.73455 -26.77334 -23.83846 -23.26397 -22.65916 -21.20266 -20.89490 -19.86689 -18.62258 -18.17083 -17.27640 -16.73173 -16.36735 -16.16001 -15.84591 -15.68606 -15.08626 -14.81563 -14.51506 -14.46329 -14.22379 -14.14702 -13.87956 -13.38516 -13.27995 -13.09242 -12.88229 -12.70100 -12.66596 -12.52384 -12.45798 -12.13701 -11.94727 -11.76198 -11.56883 -11.51889 -11.16130 -10.86539 -10.77097 -10.29339 -9.57822 -9.31139 -8.82621 -6.40029 0.73476 0.91158 1.54852 1.63087 1.67038 1.83213 2.03161 2.34054 2.67776 2.91249 3.38474 3.54070 3.65116 3.79572 3.93517 4.03306 4.13984 4.27783 4.39181 4.43847 4.56660 4.65774 4.69967 4.74065 4.82356 4.89293 4.94847 4.96283 4.97647 5.06096 5.08261 5.26484 5.28347 5.38650 5.47949 5.64980 5.76024 5.90654 6.00029 6.07006 6.13143 6.33990 6.62355 6.84221 6.90158 7.29808 8.02456 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.004611 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.879218 B = 6070.487727 C = 7226.644402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 C -0.149 4.149 4 C -0.131 4.131 5 C -0.144 4.144 6 C 0.072 3.928 7 H 0.116 0.884 8 C 0.492 3.508 9 O -0.566 6.566 10 N -0.628 5.628 11 C 0.000 4.000 12 C -0.100 4.100 13 C -0.245 4.245 14 C -0.096 4.096 15 C -0.228 4.228 16 C 0.067 3.933 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.806 5.806 21 Si 1.112 2.888 22 H -0.275 1.275 23 H -0.249 1.249 24 H -0.271 1.271 25 O -0.378 6.378 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.414 0.586 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 13.384 10.537 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 C -0.206 4.206 4 C -0.169 4.169 5 C -0.181 4.181 6 C 0.011 3.989 7 H 0.133 0.867 8 C 0.280 3.720 9 O -0.445 6.445 10 N -0.272 5.272 11 C -0.095 4.095 12 C -0.120 4.120 13 C -0.265 4.265 14 C -0.115 4.115 15 C -0.248 4.248 16 C 0.062 3.938 17 C -0.573 4.573 18 H 0.102 0.898 19 C -0.206 4.206 20 N -0.428 5.428 21 Si 0.930 3.070 22 H -0.200 1.200 23 H -0.173 1.173 24 H -0.196 1.196 25 O -0.297 6.297 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.251 0.749 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.357 12.711 9.929 16.186 hybrid contribution -1.530 0.229 -0.429 1.605 sum -2.887 12.939 9.500 16.310 Atomic orbital electron populations 1.22097 0.93902 1.01817 1.03083 1.22537 0.94693 0.93525 0.84973 1.22081 1.01685 0.93627 1.03184 1.23231 1.03833 0.92788 0.97011 1.23296 1.03164 0.99482 0.92198 1.22832 0.97489 0.85165 0.93421 0.86665 1.21349 0.80696 0.84062 0.85864 1.90582 1.36787 1.82893 1.34271 1.42737 1.46309 1.13054 1.25054 1.17828 0.94697 0.96533 1.00407 1.21111 0.96351 0.97348 0.97204 1.20587 1.00219 0.99760 1.05909 1.20648 0.93701 0.98373 0.98752 1.20742 0.98685 1.03438 1.01920 1.17746 0.91299 0.92270 0.92448 1.20506 1.05035 0.99057 1.32740 0.89834 1.28317 1.11272 0.90904 0.90085 1.70567 1.17536 1.24819 1.29848 0.83056 0.67778 0.77308 0.78886 1.20032 1.17288 1.19648 1.88552 1.67362 1.41829 1.31957 0.88532 0.93109 0.93850 0.91851 0.92990 0.88736 0.87587 0.87742 0.91294 0.86529 0.74912 0.86748 0.86842 0.86680 0.88642 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.73 71.98 0.63 -2.47 16 2 C 0.08 1.73 1.27 -10.32 -0.01 1.71 16 3 C -0.15 -2.46 8.75 71.98 0.63 -1.83 16 4 C -0.13 -2.03 6.08 31.85 0.19 -1.84 16 5 C -0.14 -3.02 6.55 32.05 0.21 -2.81 16 6 C 0.07 2.10 3.87 30.52 0.12 2.21 16 7 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 8 C 0.49 19.82 7.06 87.66 0.62 20.44 16 9 O -0.57 -27.91 13.59 15.49 0.21 -27.70 16 10 N -0.63 -25.98 5.00 -302.28 -1.51 -27.49 16 11 C 0.00 -0.01 6.44 38.88 0.25 0.24 16 12 C -0.10 -5.04 8.76 22.36 0.20 -4.84 16 13 C -0.25 -11.69 10.04 22.42 0.22 -11.47 16 14 C -0.10 -4.58 9.96 22.00 0.22 -4.36 16 15 C -0.23 -11.82 8.01 22.47 0.18 -11.64 16 16 C 0.07 3.47 5.31 -21.18 -0.11 3.36 16 17 C -0.55 -26.94 8.31 23.38 0.19 -26.75 16 18 H 0.08 3.84 7.27 -2.91 -0.02 3.82 16 19 C 0.01 0.60 4.85 85.26 0.41 1.01 16 20 N -0.81 -41.09 12.31 21.83 0.27 -40.82 16 21 Si 1.11 39.94 30.02 68.60 2.06 42.00 16 22 H -0.28 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.25 -7.85 7.11 99.48 0.71 -7.14 16 24 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 25 O -0.38 -11.99 9.92 -130.48 -1.29 -13.28 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 1.23 7.82 -2.39 -0.02 1.21 16 33 H 0.10 1.17 7.86 -2.38 -0.02 1.16 16 34 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 14.86 7.69 -92.71 -0.71 14.15 16 37 H 0.11 5.88 5.70 -2.91 -0.02 5.87 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 40 H 0.10 5.08 6.56 -2.91 -0.02 5.06 16 41 H 0.28 15.25 6.98 -92.71 -0.65 14.60 16 Total: -1.00 -67.58 335.33 4.13 -63.45 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: 0.45 Total: 42.88 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.95 Total: -39.04 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.24 Total: -68.31 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.08 Total: -40.98 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.06 Total: 42.00 kcal Total: -67.58 4.13 -63.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335135554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.906 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds