Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99998 * 2 1 4 4 C 1.50698 * 109.47322 * 269.99739 * 3 2 1 5 5 H 1.08001 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00204 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99927 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00056 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47068 * 60.00036 * 8 6 4 10 10 H 1.48496 * 109.47178 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47444 * 300.00151 * 8 6 4 12 12 C 1.34777 * 120.00036 * 179.97438 * 2 1 3 13 13 O 1.21587 * 119.99808 * 184.84514 * 12 2 1 14 14 C 1.47601 * 119.99976 * 4.84628 * 12 2 1 15 15 C 1.39754 * 120.26633 * 140.91947 * 14 12 2 16 16 C 1.37469 * 120.20234 * 180.02562 * 15 14 12 17 17 C 1.39594 * 120.42628 * 359.49207 * 16 15 14 18 18 C 1.39178 * 119.10274 * 0.83393 * 17 16 15 19 19 C 1.37298 * 120.93857 * 359.24730 * 18 17 16 20 20 C 1.51683 * 106.99435 * 178.78594 * 18 17 16 21 21 C 1.54696 * 101.90823 * 344.64511 * 20 18 17 22 22 C 1.52993 * 110.75072 * 267.00870 * 21 20 18 23 23 C 1.53004 * 110.90065 * 143.73950 * 21 20 18 24 24 O 1.35994 * 129.72257 * 180.78473 * 17 16 15 25 25 H 1.09004 * 109.47747 * 265.55078 * 1 2 3 26 26 H 1.08996 * 109.47262 * 25.55117 * 1 2 3 27 27 H 1.09001 * 109.46887 * 145.54761 * 1 2 3 28 28 H 1.09002 * 109.46978 * 30.00153 * 3 2 1 29 29 H 1.09003 * 109.47094 * 149.99410 * 3 2 1 30 30 H 0.97003 * 119.99851 * 180.02562 * 7 6 4 31 31 H 1.08000 * 119.89811 * 359.78375 * 15 14 12 32 32 H 1.08001 * 119.78677 * 179.74487 * 16 15 14 33 33 H 1.07999 * 120.07142 * 180.32346 * 19 18 17 34 34 H 1.09001 * 110.93887 * 102.80093 * 20 18 17 35 35 H 1.09004 * 110.94260 * 226.49572 * 20 18 17 36 36 H 1.09000 * 109.47926 * 174.84446 * 22 21 20 37 37 H 1.09003 * 109.47132 * 294.84926 * 22 21 20 38 38 H 1.09008 * 109.47052 * 54.83992 * 22 21 20 39 39 H 1.08998 * 109.46911 * 305.06564 * 23 21 20 40 40 H 1.09000 * 109.47042 * 65.06776 * 23 21 20 41 41 H 1.08995 * 109.47218 * 185.06640 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4381 3.4168 -3.4338 9 1 2.1408 3.5935 -4.1347 10 1 4.1804 4.7029 -3.4338 11 1 4.2415 2.3821 -4.1332 12 6 2.1389 -1.1672 0.0005 13 8 3.3515 -1.1690 0.0895 14 6 1.4048 -2.4432 -0.1069 15 6 1.9202 -3.4897 -0.8766 16 6 1.2352 -4.6774 -0.9762 17 6 0.0254 -4.8543 -0.3025 18 6 -0.4862 -3.8061 0.4568 19 6 0.1890 -2.6152 0.5616 20 6 -1.8061 -4.2803 1.0346 21 6 -2.1027 -5.5287 0.1706 22 6 -2.9738 -5.1610 -1.0321 23 6 -2.7693 -6.6243 1.0051 24 8 -0.7928 -5.9396 -0.2560 25 1 -0.3635 -0.0797 1.0246 26 1 -0.3633 0.9271 -0.4432 27 1 -0.3633 -0.8474 -0.5814 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5139 30 1 4.0295 4.4444 -0.8504 31 1 2.8576 -3.3635 -1.3979 32 1 1.6376 -5.4802 -1.5762 33 1 -0.2184 -1.8129 1.1589 34 1 -1.6969 -4.5503 2.0850 35 1 -2.5813 -3.5248 0.9066 36 1 -3.0939 -6.0336 -1.6743 37 1 -3.9519 -4.8285 -0.6843 38 1 -2.4964 -4.3587 -1.5949 39 1 -2.1482 -6.8491 1.8722 40 1 -3.7487 -6.2816 1.3388 41 1 -2.8857 -7.5226 0.3990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335513734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = -36.762156 kcal Electronic energy + Delta-G solvation = -22854.363089 eV Core-core repulsion = 19506.924480 eV Total energy + Delta-G solvation = -3347.438609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48517 -39.31354 -37.00659 -34.91653 -34.06701 -32.65551 -31.65878 -30.40825 -27.82877 -27.61316 -26.83682 -25.90206 -23.76094 -22.31955 -21.62365 -20.80181 -18.88694 -17.41560 -16.57544 -16.50503 -16.34183 -15.85481 -15.19119 -14.59183 -14.52976 -14.37053 -14.13002 -13.68989 -13.46970 -13.11364 -13.01354 -12.81804 -12.54211 -12.35448 -12.27033 -12.20954 -12.17470 -11.85865 -11.72765 -11.28850 -11.19485 -10.94317 -10.80462 -10.65459 -10.54185 -10.16604 -9.65817 -9.03620 -8.87449 -8.43547 -8.11250 -7.65054 -6.04478 -4.09677 1.11177 1.33932 2.98094 3.30744 3.32462 3.36671 3.40366 3.80531 4.06847 4.18540 4.26889 4.44788 4.48557 4.70188 4.79856 5.04696 5.09187 5.16688 5.24945 5.29523 5.29863 5.39940 5.43816 5.44696 5.55426 5.67161 5.71222 5.72185 5.84658 5.85688 6.02202 6.18422 6.21780 6.32233 6.49469 6.56637 7.04951 7.13795 7.44115 7.52460 7.91868 8.22542 8.38106 8.88350 9.05971 9.55460 11.03557 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.003521 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.753211 B = 7951.418701 C = 8026.339939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.595 5.595 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.551 3.449 13 O -0.537 6.537 14 C -0.143 4.143 15 C -0.034 4.034 16 C -0.146 4.146 17 C 0.118 3.882 18 C -0.185 4.185 19 C -0.046 4.046 20 C -0.098 4.098 21 C 0.100 3.900 22 C -0.163 4.163 23 C -0.141 4.141 24 O -0.297 6.297 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.665 -17.837 2.763 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.338 3.662 13 O -0.416 6.416 14 C -0.146 4.146 15 C -0.052 4.052 16 C -0.165 4.165 17 C 0.072 3.928 18 C -0.186 4.186 19 C -0.065 4.065 20 C -0.135 4.135 21 C 0.062 3.938 22 C -0.221 4.221 23 C -0.198 4.198 24 O -0.212 6.212 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.900 -17.848 2.811 23.419 hybrid contribution 0.059 0.527 -0.961 1.098 sum -14.841 -17.321 1.850 22.885 Atomic orbital electron populations 1.21947 0.81681 1.03088 0.99804 1.48066 1.06143 1.07656 1.70731 1.19339 0.92715 0.77786 0.97593 1.21410 1.36771 1.06391 0.92248 0.92436 1.24935 0.95285 0.96342 0.97492 1.69925 1.38264 1.14332 1.30816 0.86545 0.78377 0.77836 0.84594 1.20230 1.21148 1.20131 1.18025 0.87101 0.83214 0.77888 1.90760 1.13512 1.87076 1.50214 1.20079 0.96019 0.96139 1.02394 1.20946 0.98521 0.90386 0.95381 1.20167 0.94596 0.98816 1.02872 1.19720 0.92512 0.86220 0.94320 1.20592 0.99266 0.95678 1.03042 1.20785 0.92637 0.95792 0.97275 1.21858 0.94805 0.96840 0.99985 1.22754 0.82388 0.94403 0.94214 1.22202 0.99622 1.02687 0.97549 1.21833 1.00526 0.97784 0.99643 1.86828 1.20529 1.29803 1.84019 0.93640 0.90651 0.91910 0.94835 0.93561 0.92619 0.84198 0.85136 0.84477 0.89143 0.88947 0.91370 0.90645 0.91583 0.91409 0.90305 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 8.88 59.85 0.53 1.81 16 2 N -0.59 -13.01 2.86 -184.17 -0.53 -13.54 16 3 C 0.24 6.49 5.18 -5.19 -0.03 6.46 16 4 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.55 12.16 7.35 -12.44 -0.09 12.07 16 13 O -0.54 -14.12 16.47 5.29 0.09 -14.03 16 14 C -0.14 -2.48 5.24 -104.92 -0.55 -3.03 16 15 C -0.03 -0.53 9.61 -39.30 -0.38 -0.91 16 16 C -0.15 -1.99 10.05 -39.36 -0.40 -2.39 16 17 C 0.12 1.58 6.95 -38.73 -0.27 1.31 16 18 C -0.18 -2.34 6.25 -104.13 -0.65 -2.99 16 19 C -0.05 -0.66 7.55 -39.33 -0.30 -0.96 16 20 C -0.10 -0.90 6.19 -26.51 -0.16 -1.06 16 21 C 0.10 0.90 1.26 -89.73 -0.11 0.78 16 22 C -0.16 -1.27 8.84 37.15 0.33 -0.94 16 23 C -0.14 -0.92 8.96 37.16 0.33 -0.58 16 24 O -0.30 -3.66 10.51 -19.72 -0.21 -3.87 16 25 H 0.05 0.61 6.89 -51.93 -0.36 0.26 16 26 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16 27 H 0.06 0.91 5.82 -51.93 -0.30 0.61 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.14 2.20 8.05 -52.49 -0.42 1.78 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.14 1.75 5.30 -52.49 -0.28 1.47 16 34 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 35 H 0.09 0.69 7.92 -51.93 -0.41 0.28 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.61 8.12 -51.92 -0.42 0.19 16 39 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -33.98 339.48 -7.88 -41.86 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.90 Total: -2.26 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.16 Total: -4.24 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.21 Total: -39.50 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.12 Total: -17.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.98 -7.88 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335513734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.101 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds