Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99998 * 2 1 4 4 C 1.50698 * 109.47322 * 269.99739 * 3 2 1 5 5 H 1.08001 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00204 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99927 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00056 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47068 * 60.00036 * 8 6 4 10 10 H 1.48496 * 109.47178 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47444 * 300.00151 * 8 6 4 12 12 C 1.34777 * 120.00036 * 179.97438 * 2 1 3 13 13 O 1.21587 * 119.99808 * 184.84514 * 12 2 1 14 14 C 1.47601 * 119.99976 * 4.84628 * 12 2 1 15 15 C 1.39754 * 120.26633 * 140.91947 * 14 12 2 16 16 C 1.37469 * 120.20234 * 180.02562 * 15 14 12 17 17 C 1.39594 * 120.42628 * 359.49207 * 16 15 14 18 18 C 1.39178 * 119.10274 * 0.83393 * 17 16 15 19 19 C 1.37298 * 120.93857 * 359.24730 * 18 17 16 20 20 C 1.51683 * 106.99435 * 178.78594 * 18 17 16 21 21 C 1.54696 * 101.90823 * 344.64511 * 20 18 17 22 22 C 1.52993 * 110.75072 * 267.00870 * 21 20 18 23 23 C 1.53004 * 110.90065 * 143.73950 * 21 20 18 24 24 O 1.35994 * 129.72257 * 180.78473 * 17 16 15 25 25 H 1.09004 * 109.47747 * 265.55078 * 1 2 3 26 26 H 1.08996 * 109.47262 * 25.55117 * 1 2 3 27 27 H 1.09001 * 109.46887 * 145.54761 * 1 2 3 28 28 H 1.09002 * 109.46978 * 30.00153 * 3 2 1 29 29 H 1.09003 * 109.47094 * 149.99410 * 3 2 1 30 30 H 0.97003 * 119.99851 * 180.02562 * 7 6 4 31 31 H 1.08000 * 119.89811 * 359.78375 * 15 14 12 32 32 H 1.08001 * 119.78677 * 179.74487 * 16 15 14 33 33 H 1.07999 * 120.07142 * 180.32346 * 19 18 17 34 34 H 1.09001 * 110.93887 * 102.80093 * 20 18 17 35 35 H 1.09004 * 110.94260 * 226.49572 * 20 18 17 36 36 H 1.09000 * 109.47926 * 174.84446 * 22 21 20 37 37 H 1.09003 * 109.47132 * 294.84926 * 22 21 20 38 38 H 1.09008 * 109.47052 * 54.83992 * 22 21 20 39 39 H 1.08998 * 109.46911 * 305.06564 * 23 21 20 40 40 H 1.09000 * 109.47042 * 65.06776 * 23 21 20 41 41 H 1.08995 * 109.47218 * 185.06640 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4381 3.4168 -3.4338 9 1 2.1408 3.5935 -4.1347 10 1 4.1804 4.7029 -3.4338 11 1 4.2415 2.3821 -4.1332 12 6 2.1389 -1.1672 0.0005 13 8 3.3515 -1.1690 0.0895 14 6 1.4048 -2.4432 -0.1069 15 6 1.9202 -3.4897 -0.8766 16 6 1.2352 -4.6774 -0.9762 17 6 0.0254 -4.8543 -0.3025 18 6 -0.4862 -3.8061 0.4568 19 6 0.1890 -2.6152 0.5616 20 6 -1.8061 -4.2803 1.0346 21 6 -2.1027 -5.5287 0.1706 22 6 -2.9738 -5.1610 -1.0321 23 6 -2.7693 -6.6243 1.0051 24 8 -0.7928 -5.9396 -0.2560 25 1 -0.3635 -0.0797 1.0246 26 1 -0.3633 0.9271 -0.4432 27 1 -0.3633 -0.8474 -0.5814 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5139 30 1 4.0295 4.4444 -0.8504 31 1 2.8576 -3.3635 -1.3979 32 1 1.6376 -5.4802 -1.5762 33 1 -0.2184 -1.8129 1.1589 34 1 -1.6969 -4.5503 2.0850 35 1 -2.5813 -3.5248 0.9066 36 1 -3.0939 -6.0336 -1.6743 37 1 -3.9519 -4.8285 -0.6843 38 1 -2.4964 -4.3587 -1.5949 39 1 -2.1482 -6.8491 1.8722 40 1 -3.7487 -6.2816 1.3388 41 1 -2.8857 -7.5226 0.3990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335513734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -57.991212 kcal Electronic energy + Delta-G solvation = -22855.283650 eV Core-core repulsion = 19506.924480 eV Total energy + Delta-G solvation = -3348.359170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.43618 -40.86220 -38.25261 -36.72858 -34.95178 -34.67442 -32.61992 -31.76364 -29.48391 -28.34095 -27.91091 -27.26248 -25.55401 -23.69203 -22.78586 -21.62780 -20.41881 -18.71460 -18.49291 -17.97307 -17.49708 -16.97150 -16.65986 -16.16390 -16.07557 -15.52832 -15.16555 -14.78896 -14.59672 -14.34453 -14.27296 -13.82516 -13.79567 -13.62972 -13.47472 -13.33705 -13.13820 -13.04038 -12.88874 -12.78760 -12.64079 -12.50149 -12.21990 -12.03161 -11.77928 -11.72194 -11.59401 -10.79231 -10.65679 -9.95901 -9.52909 -9.17156 -8.24094 -6.39642 -0.09203 0.25310 1.36172 1.40775 1.48114 1.76795 2.12112 2.29656 2.42038 2.69655 3.05334 3.34273 3.46321 3.71438 3.79590 3.88078 4.05795 4.11907 4.23153 4.33937 4.45535 4.58867 4.66887 4.70458 4.76419 4.81386 4.87422 4.90304 4.92591 4.97105 4.99829 5.11804 5.19827 5.24506 5.25305 5.32695 5.36274 5.50196 5.53813 5.79942 6.03124 6.14757 6.64133 6.70440 7.22669 7.38148 8.83014 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.003521 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.753211 B = 7951.418701 C = 8026.339939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.259 3.741 4 C -0.549 4.549 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.545 3.455 13 O -0.597 6.597 14 C -0.168 4.168 15 C -0.044 4.044 16 C -0.146 4.146 17 C 0.121 3.879 18 C -0.180 4.180 19 C -0.039 4.039 20 C -0.095 4.095 21 C 0.091 3.909 22 C -0.162 4.162 23 C -0.138 4.138 24 O -0.308 6.308 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.269 0.731 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.956 -19.231 2.384 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.138 3.862 4 C -0.587 4.587 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.334 3.666 13 O -0.479 6.479 14 C -0.171 4.171 15 C -0.063 4.063 16 C -0.165 4.165 17 C 0.075 3.925 18 C -0.181 4.181 19 C -0.058 4.058 20 C -0.132 4.132 21 C 0.055 3.945 22 C -0.220 4.220 23 C -0.195 4.195 24 O -0.223 6.223 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.260 -19.260 2.438 26.652 hybrid contribution 0.991 0.833 -0.789 1.516 sum -17.269 -18.427 1.649 25.308 Atomic orbital electron populations 1.22250 0.78069 1.03931 1.02459 1.48063 1.08408 1.06150 1.70441 1.18834 0.91271 0.79872 0.96264 1.21676 1.37355 1.06777 0.92918 0.92904 1.25866 0.94700 0.96281 1.02156 1.70043 1.38686 1.14768 1.33150 0.85451 0.78914 0.77399 0.78961 1.18348 1.20134 1.20353 1.18775 0.86725 0.84663 0.76392 1.90706 1.16249 1.88090 1.52898 1.19702 0.97704 0.94153 1.05554 1.20895 0.98552 0.91092 0.95768 1.20258 0.94820 0.98331 1.03085 1.19905 0.92296 0.86811 0.93497 1.20929 1.00476 0.94497 1.02203 1.20808 0.91312 0.97002 0.96636 1.22032 0.93245 0.97340 1.00546 1.23153 0.81089 0.95272 0.95013 1.22233 1.00485 1.02249 0.96989 1.21884 1.01482 0.97087 0.99064 1.86843 1.21943 1.29647 1.83849 0.90133 0.90941 0.89715 0.95202 0.98190 0.92258 0.85423 0.83231 0.82869 0.87654 0.86432 0.91194 0.87994 0.93237 0.91666 0.87655 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.35 8.88 127.77 1.13 3.48 16 2 N -0.60 -27.05 2.86 -854.85 -2.44 -29.49 16 3 C 0.26 14.39 5.18 85.63 0.44 14.83 16 4 C -0.55 -32.41 9.39 25.60 0.24 -32.17 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.54 5.46 84.65 0.46 1.00 16 7 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 8 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 9 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 C 0.54 25.16 7.35 86.71 0.64 25.80 16 13 O -0.60 -33.61 16.47 -3.99 -0.07 -33.68 16 14 C -0.17 -5.91 5.24 -20.06 -0.11 -6.01 16 15 C -0.04 -1.43 9.61 22.45 0.22 -1.21 16 16 C -0.15 -3.89 10.05 22.42 0.23 -3.67 16 17 C 0.12 3.00 6.95 22.82 0.16 3.16 16 18 C -0.18 -4.07 6.25 -19.55 -0.12 -4.19 16 19 C -0.04 -1.05 7.55 22.43 0.17 -0.88 16 20 C -0.10 -1.34 6.19 30.74 0.19 -1.15 16 21 C 0.09 1.30 1.26 -10.22 -0.01 1.29 16 22 C -0.16 -1.94 8.84 71.98 0.64 -1.30 16 23 C -0.14 -1.24 8.96 71.98 0.65 -0.60 16 24 O -0.31 -6.77 10.51 -93.48 -0.98 -7.75 16 25 H 0.08 1.97 6.89 -2.39 -0.02 1.96 16 26 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 27 H 0.08 2.30 5.82 -2.39 -0.01 2.29 16 28 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.00 0.00 7.36 -2.39 -0.02 -0.02 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.13 4.33 8.05 -2.91 -0.02 4.30 16 32 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.15 3.50 5.30 -2.91 -0.02 3.48 16 34 H 0.11 1.25 7.91 -2.39 -0.02 1.23 16 35 H 0.12 1.13 7.92 -2.38 -0.02 1.11 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.76 8.12 -2.38 -0.02 0.75 16 39 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 40 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.96 339.48 4.76 -73.20 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.02 Total: 8.34 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.92 Total: -1.62 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.16 Total: -85.89 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.05 Total: -41.43 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.96 4.76 -73.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335513734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.207 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds