Wall clock time and date at job start Tue Mar 31 2020 07:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.57336 * 2 1 4 4 C 1.34781 * 119.99872 * 300.15562 * 3 2 1 5 5 O 1.21548 * 119.99690 * 0.02562 * 4 3 2 6 6 C 1.47887 * 119.99801 * 179.97438 * 4 3 2 7 7 C 1.39915 * 120.02696 * 0.02562 * 6 4 3 8 8 C 1.38324 * 120.35598 * 180.02562 * 7 6 4 9 9 C 1.37751 * 120.41736 * 359.97438 * 8 7 6 10 10 C 1.40750 * 120.03573 * 359.97438 * 9 8 7 11 11 C 1.41434 * 120.17615 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00189 * 24.35817 * 11 10 9 13 13 C 1.39940 * 120.00081 * 204.36405 * 11 10 9 14 14 N 1.30833 * 120.00258 * 17.73243 * 13 11 10 15 15 Si 1.86803 * 120.00244 * 197.73986 * 13 11 10 16 16 H 1.48497 * 109.46975 * 89.99460 * 15 13 11 17 17 H 1.48498 * 109.47023 * 209.99680 * 15 13 11 18 18 H 1.48497 * 109.46991 * 329.99849 * 15 13 11 19 19 C 1.39001 * 120.02211 * 179.72723 * 6 4 3 20 20 C 1.53183 * 109.51950 * 120.15513 * 2 1 3 21 21 C 1.53178 * 109.03318 * 176.88585 * 20 2 1 22 22 C 1.53092 * 109.16396 * 303.02309 * 21 20 2 23 23 O 1.42894 * 109.41874 * 57.60610 * 22 21 20 24 24 C 1.42908 * 114.09836 * 298.84808 * 23 22 21 25 25 H 1.09004 * 109.47020 * 299.84267 * 1 2 3 26 26 H 1.09000 * 109.47277 * 59.84366 * 1 2 3 27 27 H 1.09001 * 109.47186 * 179.84515 * 1 2 3 28 28 H 0.96996 * 120.00484 * 120.15303 * 3 2 1 29 29 H 1.07999 * 119.82004 * 0.02562 * 7 6 4 30 30 H 1.08007 * 119.79503 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.98558 * 180.02562 * 9 8 7 32 32 H 0.96998 * 120.00465 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.20348 * 0.02562 * 19 6 4 34 34 H 1.08999 * 109.54051 * 296.75279 * 20 2 1 35 35 H 1.08997 * 109.54443 * 56.92951 * 20 2 1 36 36 H 1.09008 * 109.52025 * 62.92566 * 21 20 2 37 37 H 1.08997 * 109.52534 * 183.11293 * 21 20 2 38 38 H 1.09005 * 109.47781 * 177.59438 * 22 21 20 39 39 H 1.08998 * 109.47762 * 297.62243 * 22 21 20 40 40 H 1.09003 * 109.47810 * 301.17127 * 24 23 22 41 41 H 1.09007 * 109.47790 * 181.14223 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0208 1.3803 0.0000 4 6 1.6941 2.2117 -1.0093 5 8 0.9918 1.8163 -1.9192 6 6 2.1890 3.6053 -1.0090 7 6 2.9970 4.0611 0.0385 8 6 3.4633 5.3634 0.0459 9 6 3.1384 6.2263 -0.9775 10 6 2.3277 5.7854 -2.0402 11 6 1.9927 6.6688 -3.0928 12 1 2.6297 7.5127 -3.3128 13 6 0.8359 6.4493 -3.8491 14 7 -0.1059 5.6649 -3.3914 15 14 0.6363 7.2763 -5.5121 16 1 1.1961 6.3990 -6.5715 17 1 -0.8054 7.5141 -5.7769 18 1 1.3598 8.5731 -5.5101 19 6 1.8571 4.4615 -2.0525 20 6 2.0418 -0.7253 1.2484 21 6 3.5715 -0.7871 1.1983 22 6 4.0043 -1.4816 -0.0956 23 8 3.4694 -0.7744 -1.2162 24 6 2.0415 -0.7249 -1.2475 25 1 -0.3633 0.5114 0.8914 26 1 -0.3634 0.5163 -0.8886 27 1 -0.3633 -1.0277 -0.0028 28 1 2.5808 1.6960 0.7263 29 1 3.2579 3.3925 0.8455 30 1 4.0860 5.7058 0.8592 31 1 3.5066 7.2414 -0.9649 32 1 -0.9075 5.5125 -3.9158 33 1 1.2373 4.1126 -2.8653 34 1 1.7278 -0.1824 2.1399 35 1 1.6354 -1.7363 1.2751 36 1 3.9779 0.2241 1.2224 37 1 3.9416 -1.3500 2.0551 38 1 5.0926 -1.4903 -0.1570 39 1 3.6315 -2.5058 -0.1006 40 1 1.6430 -1.7393 -1.2676 41 1 1.7159 -0.1885 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335748677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:02 Heat of formation + Delta-G solvation = -72.741723 kcal Electronic energy + Delta-G solvation = -23452.533524 eV Core-core repulsion = 20103.534724 eV Total energy + Delta-G solvation = -3348.998800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35901 -38.38100 -36.92052 -35.06204 -33.73077 -32.45628 -31.47222 -29.60774 -29.31154 -26.87229 -25.28897 -25.13588 -23.11676 -22.05101 -20.94837 -19.89234 -19.02388 -17.77696 -16.63845 -16.10049 -15.87118 -15.27257 -15.04252 -14.68577 -14.64915 -14.07535 -13.88556 -13.74928 -13.13865 -12.86910 -12.76282 -12.68507 -12.46011 -12.20999 -11.84088 -11.80967 -11.58519 -11.25774 -11.13496 -11.04103 -10.75334 -10.67475 -10.47053 -10.45799 -9.91998 -9.66481 -9.57748 -9.19280 -8.80945 -8.48453 -7.58986 -7.48939 -6.77734 -4.38882 2.25596 2.84219 3.09466 3.12560 3.18146 3.63720 3.90839 3.94397 4.01914 4.55735 4.64918 4.71303 4.78239 4.90212 5.21617 5.31644 5.44322 5.51476 5.61453 5.63766 5.65951 5.76543 5.81109 5.88025 6.02350 6.06109 6.10160 6.23092 6.30485 6.48083 6.74551 6.95865 7.01944 7.05789 7.24121 7.31528 7.41620 7.73546 7.80431 7.95961 8.15284 8.23458 8.53854 8.83113 8.86595 9.02657 10.17002 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.004461 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.904432 B = 6275.365956 C = 6838.167052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 N -0.720 5.720 4 C 0.571 3.429 5 O -0.546 6.546 6 C -0.127 4.127 7 C -0.217 4.217 8 C -0.098 4.098 9 C -0.213 4.213 10 C 0.099 3.901 11 C -0.461 4.461 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.784 5.784 15 Si 0.910 3.090 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.092 4.092 20 C -0.124 4.124 21 C -0.157 4.157 22 C 0.057 3.943 23 O -0.372 6.372 24 C 0.050 3.950 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.397 0.603 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.284 0.716 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -12.029 7.853 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 N -0.373 5.373 4 C 0.362 3.638 5 O -0.425 6.425 6 C -0.130 4.130 7 C -0.237 4.237 8 C -0.117 4.117 9 C -0.233 4.233 10 C 0.096 3.904 11 C -0.490 4.490 12 H 0.099 0.901 13 C -0.145 4.145 14 N -0.408 5.408 15 Si 0.734 3.266 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.112 4.112 20 C -0.162 4.162 21 C -0.195 4.195 22 C -0.020 4.020 23 O -0.290 6.290 24 C -0.028 4.028 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.491 -12.323 7.007 14.393 hybrid contribution -0.074 0.374 0.090 0.392 sum 2.417 -11.949 7.097 14.106 Atomic orbital electron populations 1.22173 0.93873 1.01890 1.04276 1.20821 0.94617 0.82982 0.95659 1.45904 1.54505 1.10497 1.26428 1.18739 0.78705 0.85778 0.80553 1.90602 1.38286 1.77332 1.36254 1.19488 1.02796 0.92059 0.98634 1.20323 1.06813 0.96605 0.99955 1.20422 0.99669 0.93801 0.97766 1.21091 1.07730 0.98290 0.96154 1.17600 0.89974 0.91565 0.91238 1.19594 1.06545 1.10394 1.12438 0.90110 1.25955 0.94910 0.94420 0.99223 1.69793 1.05412 1.29267 1.36351 0.86279 0.78120 0.80326 0.81843 1.19133 1.20250 1.18595 1.21638 1.00036 0.92119 0.97401 1.21889 0.95772 1.01032 0.97507 1.22210 0.96064 1.02529 0.98723 1.22557 0.99088 0.94282 0.86045 1.88037 1.20400 1.76029 1.44493 1.23147 0.80703 0.98948 0.99975 0.92356 0.89588 0.92338 0.76691 0.89440 0.89002 0.88680 0.90493 0.84812 0.90788 0.90499 0.90749 0.90828 0.89134 0.93587 0.93126 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.41 37.16 0.31 -1.98 16 2 C 0.15 2.05 0.68 -131.68 -0.09 1.96 16 3 N -0.72 -12.08 4.69 -48.40 -0.23 -12.30 16 4 C 0.57 12.40 7.19 -12.31 -0.09 12.32 16 5 O -0.55 -13.10 12.54 5.32 0.07 -13.03 16 6 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 7 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 8 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 9 C -0.21 -5.12 9.78 -38.81 -0.38 -5.50 16 10 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 11 C -0.46 -12.23 9.05 -37.73 -0.34 -12.57 16 12 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 13 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 14 N -0.78 -20.86 10.96 55.55 0.61 -20.25 16 15 Si 0.91 18.95 29.60 -169.99 -5.03 13.92 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 C -0.09 -2.47 8.24 -38.44 -0.32 -2.79 16 20 C -0.12 -1.29 4.85 -26.54 -0.13 -1.42 16 21 C -0.16 -1.56 5.95 -26.59 -0.16 -1.72 16 22 C 0.06 0.63 6.84 37.21 0.25 0.89 16 23 O -0.37 -5.77 10.67 -35.23 -0.38 -6.15 16 24 C 0.05 0.75 5.41 37.20 0.20 0.95 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.49 6.16 -51.93 -0.32 1.17 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.40 6.00 5.54 -40.82 -0.23 5.78 16 29 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 30 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 33 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.82 7.10 -51.92 -0.37 0.45 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.12 2.15 6.14 -51.92 -0.32 1.83 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -29.69 326.83 -8.48 -38.17 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.65 Total: 11.91 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.80 Total: -17.19 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.38 Total: -32.55 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.31 Total: -19.18 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.69 -8.48 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335748677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.569 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds