Wall clock time and date at job start Tue Mar 31 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.57336 * 2 1 4 4 C 1.34781 * 119.99872 * 300.15562 * 3 2 1 5 5 O 1.21548 * 119.99690 * 0.02562 * 4 3 2 6 6 C 1.47887 * 119.99801 * 179.97438 * 4 3 2 7 7 C 1.39915 * 120.02696 * 0.02562 * 6 4 3 8 8 C 1.38324 * 120.35598 * 180.02562 * 7 6 4 9 9 C 1.37751 * 120.41736 * 359.97438 * 8 7 6 10 10 C 1.40750 * 120.03573 * 359.97438 * 9 8 7 11 11 C 1.41434 * 120.17615 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00189 * 24.35817 * 11 10 9 13 13 C 1.39940 * 120.00081 * 204.36405 * 11 10 9 14 14 N 1.30833 * 120.00258 * 17.73243 * 13 11 10 15 15 Si 1.86803 * 120.00244 * 197.73986 * 13 11 10 16 16 H 1.48497 * 109.46975 * 89.99460 * 15 13 11 17 17 H 1.48498 * 109.47023 * 209.99680 * 15 13 11 18 18 H 1.48497 * 109.46991 * 329.99849 * 15 13 11 19 19 C 1.39001 * 120.02211 * 179.72723 * 6 4 3 20 20 C 1.53183 * 109.51950 * 120.15513 * 2 1 3 21 21 C 1.53178 * 109.03318 * 176.88585 * 20 2 1 22 22 C 1.53092 * 109.16396 * 303.02309 * 21 20 2 23 23 O 1.42894 * 109.41874 * 57.60610 * 22 21 20 24 24 C 1.42908 * 114.09836 * 298.84808 * 23 22 21 25 25 H 1.09004 * 109.47020 * 299.84267 * 1 2 3 26 26 H 1.09000 * 109.47277 * 59.84366 * 1 2 3 27 27 H 1.09001 * 109.47186 * 179.84515 * 1 2 3 28 28 H 0.96996 * 120.00484 * 120.15303 * 3 2 1 29 29 H 1.07999 * 119.82004 * 0.02562 * 7 6 4 30 30 H 1.08007 * 119.79503 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.98558 * 180.02562 * 9 8 7 32 32 H 0.96998 * 120.00465 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.20348 * 0.02562 * 19 6 4 34 34 H 1.08999 * 109.54051 * 296.75279 * 20 2 1 35 35 H 1.08997 * 109.54443 * 56.92951 * 20 2 1 36 36 H 1.09008 * 109.52025 * 62.92566 * 21 20 2 37 37 H 1.08997 * 109.52534 * 183.11293 * 21 20 2 38 38 H 1.09005 * 109.47781 * 177.59438 * 22 21 20 39 39 H 1.08998 * 109.47762 * 297.62243 * 22 21 20 40 40 H 1.09003 * 109.47810 * 301.17127 * 24 23 22 41 41 H 1.09007 * 109.47790 * 181.14223 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0208 1.3803 0.0000 4 6 1.6941 2.2117 -1.0093 5 8 0.9918 1.8163 -1.9192 6 6 2.1890 3.6053 -1.0090 7 6 2.9970 4.0611 0.0385 8 6 3.4633 5.3634 0.0459 9 6 3.1384 6.2263 -0.9775 10 6 2.3277 5.7854 -2.0402 11 6 1.9927 6.6688 -3.0928 12 1 2.6297 7.5127 -3.3128 13 6 0.8359 6.4493 -3.8491 14 7 -0.1059 5.6649 -3.3914 15 14 0.6363 7.2763 -5.5121 16 1 1.1961 6.3990 -6.5715 17 1 -0.8054 7.5141 -5.7769 18 1 1.3598 8.5731 -5.5101 19 6 1.8571 4.4615 -2.0525 20 6 2.0418 -0.7253 1.2484 21 6 3.5715 -0.7871 1.1983 22 6 4.0043 -1.4816 -0.0956 23 8 3.4694 -0.7744 -1.2162 24 6 2.0415 -0.7249 -1.2475 25 1 -0.3633 0.5114 0.8914 26 1 -0.3634 0.5163 -0.8886 27 1 -0.3633 -1.0277 -0.0028 28 1 2.5808 1.6960 0.7263 29 1 3.2579 3.3925 0.8455 30 1 4.0860 5.7058 0.8592 31 1 3.5066 7.2414 -0.9649 32 1 -0.9075 5.5125 -3.9158 33 1 1.2373 4.1126 -2.8653 34 1 1.7278 -0.1824 2.1399 35 1 1.6354 -1.7363 1.2751 36 1 3.9779 0.2241 1.2224 37 1 3.9416 -1.3500 2.0551 38 1 5.0926 -1.4903 -0.1570 39 1 3.6315 -2.5058 -0.1006 40 1 1.6430 -1.7393 -1.2676 41 1 1.7159 -0.1885 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335748677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:01 Heat of formation + Delta-G solvation = -91.577282 kcal Electronic energy + Delta-G solvation = -23453.350295 eV Core-core repulsion = 20103.534724 eV Total energy + Delta-G solvation = -3349.815571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66060 -39.87245 -38.64505 -36.34887 -35.60821 -33.57072 -32.84839 -31.39788 -31.06878 -27.90569 -27.20756 -26.13317 -24.72384 -23.12109 -22.77047 -21.37066 -20.40082 -19.53685 -18.10125 -17.45128 -17.07055 -16.86612 -16.46889 -16.26240 -15.99434 -15.48447 -15.21813 -15.17231 -14.79374 -14.49640 -14.24796 -13.88312 -13.59688 -13.49320 -13.41065 -12.99942 -12.87523 -12.84156 -12.77063 -12.50924 -12.17643 -12.08217 -11.90015 -11.63943 -11.49825 -11.41170 -11.08224 -10.66547 -10.46375 -9.88211 -9.44922 -9.37635 -8.66707 -6.38437 0.41555 1.01084 1.35564 1.47856 1.50048 2.14660 2.19703 2.26889 2.79956 3.00446 3.55745 3.70165 3.82898 3.85646 4.00326 4.11109 4.30539 4.40962 4.41443 4.51553 4.58548 4.69317 4.74685 4.77556 4.82722 4.89962 4.93114 5.01679 5.08692 5.14707 5.20091 5.27287 5.30485 5.35827 5.52264 5.64244 5.87485 5.93763 6.05705 6.28699 6.31665 6.53830 6.74488 6.87933 6.95100 7.40687 8.30121 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.004461 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.904432 B = 6275.365956 C = 6838.167052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 N -0.699 5.699 4 C 0.565 3.435 5 O -0.579 6.579 6 C -0.139 4.139 7 C -0.199 4.199 8 C -0.096 4.096 9 C -0.220 4.220 10 C 0.067 3.933 11 C -0.499 4.499 12 H 0.083 0.917 13 C 0.030 3.970 14 N -0.825 5.825 15 Si 0.983 3.017 16 H -0.267 1.267 17 H -0.268 1.268 18 H -0.250 1.250 19 C -0.132 4.132 20 C -0.116 4.116 21 C -0.154 4.154 22 C 0.047 3.953 23 O -0.405 6.405 24 C 0.052 3.948 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.407 0.593 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.108 0.892 32 H 0.286 0.714 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -13.456 10.635 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 N -0.352 5.352 4 C 0.354 3.646 5 O -0.460 6.460 6 C -0.142 4.142 7 C -0.219 4.219 8 C -0.114 4.114 9 C -0.240 4.240 10 C 0.065 3.935 11 C -0.528 4.528 12 H 0.101 0.899 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.803 3.197 16 H -0.192 1.192 17 H -0.193 1.193 18 H -0.173 1.173 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.191 4.191 22 C -0.029 4.029 23 O -0.324 6.324 24 C -0.026 4.026 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.245 0.755 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.893 -13.767 9.844 17.366 hybrid contribution -0.388 0.678 -0.609 0.990 sum 3.504 -13.089 9.235 16.398 Atomic orbital electron populations 1.22126 0.93963 1.03394 1.02397 1.21127 0.94623 0.81363 0.97536 1.45760 1.53367 1.11229 1.24849 1.18595 0.78782 0.85749 0.81424 1.90600 1.39772 1.77783 1.37847 1.19877 1.02755 0.93103 0.98477 1.20818 1.04247 0.97279 0.99565 1.20909 0.99170 0.93336 0.97944 1.21399 1.06955 0.99511 0.96115 1.17951 0.91209 0.91734 0.92586 1.19873 1.07589 1.11230 1.14129 0.89863 1.26849 0.94105 0.94838 1.02673 1.69894 1.06073 1.31145 1.37933 0.85196 0.78466 0.79451 0.76583 1.19186 1.19285 1.17333 1.21444 1.02129 0.93295 0.98344 1.21912 0.96136 1.01945 0.95380 1.22215 0.95543 1.02238 0.99145 1.22869 0.99665 0.95088 0.85286 1.87988 1.20344 1.77130 1.46921 1.22984 0.81109 0.99891 0.98622 0.91755 0.93839 0.89172 0.75492 0.85003 0.84440 0.87406 0.90326 0.88311 0.89300 0.87869 0.91986 0.87487 0.88170 0.91491 0.90405 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 8.41 71.98 0.61 -3.72 16 2 C 0.14 3.66 0.68 3.69 0.00 3.66 16 3 N -0.70 -22.68 4.69 -425.31 -2.00 -24.67 16 4 C 0.56 25.23 7.19 86.80 0.62 25.86 16 5 O -0.58 -29.70 12.54 -3.87 -0.05 -29.75 16 6 C -0.14 -6.78 5.87 -20.13 -0.12 -6.89 16 7 C -0.20 -8.12 9.55 22.70 0.22 -7.90 16 8 C -0.10 -3.91 10.01 22.17 0.22 -3.68 16 9 C -0.22 -10.57 9.78 22.77 0.22 -10.35 16 10 C 0.07 3.76 5.57 -21.32 -0.12 3.64 16 11 C -0.50 -27.82 9.05 23.47 0.21 -27.61 16 12 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 13 C 0.03 1.62 5.14 85.25 0.44 2.05 16 14 N -0.82 -46.87 10.96 21.83 0.24 -46.63 16 15 Si 0.98 40.49 29.60 68.60 2.03 42.52 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 19 C -0.13 -7.51 8.24 23.01 0.19 -7.32 16 20 C -0.12 -1.89 4.85 30.71 0.15 -1.74 16 21 C -0.15 -2.36 5.95 30.68 0.18 -2.18 16 22 C 0.05 0.89 6.84 72.01 0.49 1.38 16 23 O -0.40 -12.15 10.67 -148.98 -1.59 -13.74 16 24 C 0.05 1.52 5.41 72.01 0.39 1.91 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.56 6.16 -2.39 -0.01 1.54 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.41 11.17 5.54 -92.71 -0.51 10.66 16 29 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 30 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 33 H 0.10 6.26 5.74 -2.91 -0.02 6.24 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.12 7.10 -2.38 -0.02 1.10 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.79 6.14 -2.38 -0.01 2.78 16 Total: -1.00 -71.69 326.83 2.88 -68.81 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.53 Total: 36.34 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.71 Total: -32.87 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.76 Total: -71.31 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.64 Total: -43.50 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -71.69 2.88 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335748677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.764 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds