Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38241 * 119.99895 * 2 1 4 4 C 1.38228 * 119.99618 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00679 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00472 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47619 * 340.02463 * 6 5 4 8 8 O 1.42903 * 109.48180 * 220.00114 * 6 5 4 9 9 C 1.42904 * 114.09377 * 178.85886 * 8 6 5 10 10 C 1.53085 * 109.41277 * 61.16115 * 9 8 6 11 11 C 1.53179 * 109.16630 * 302.38492 * 10 9 8 12 12 C 1.53091 * 109.47671 * 100.05695 * 6 5 4 13 13 H 1.09001 * 109.51992 * 57.69025 * 12 6 5 14 14 N 1.46499 * 109.52366 * 297.56378 * 12 6 5 15 15 C 1.34777 * 119.99846 * 155.00426 * 14 12 6 16 16 O 1.21689 * 119.99943 * 359.97438 * 15 14 12 17 17 C 1.46375 * 120.00068 * 179.97438 * 15 14 12 18 18 H 1.08005 * 119.99818 * 353.94165 * 17 15 14 19 19 C 1.40048 * 120.00016 * 173.93779 * 17 15 14 20 20 N 1.30670 * 120.00048 * 6.14773 * 19 17 15 21 21 Si 1.86800 * 119.99700 * 186.15242 * 19 17 15 22 22 H 1.48499 * 109.47280 * 94.98408 * 21 19 17 23 23 H 1.48500 * 109.46880 * 214.98181 * 21 19 17 24 24 H 1.48500 * 109.47134 * 334.98025 * 21 19 17 25 25 C 1.38240 * 119.99507 * 0.25490 * 5 4 3 26 26 C 1.38232 * 120.00175 * 359.49478 * 25 5 4 27 27 H 1.09007 * 109.47046 * 90.00604 * 1 2 3 28 28 H 1.08997 * 109.47331 * 210.00459 * 1 2 3 29 29 H 1.09001 * 109.47637 * 330.00497 * 1 2 3 30 30 H 1.08003 * 119.99736 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.99557 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47986 * 301.17585 * 9 8 6 33 33 H 1.09007 * 109.47595 * 181.14410 * 9 8 6 34 34 H 1.09001 * 109.52637 * 62.29856 * 10 9 8 35 35 H 1.09002 * 109.51757 * 182.48391 * 10 9 8 36 36 H 1.08997 * 109.54400 * 176.85029 * 11 10 9 37 37 H 1.08997 * 109.54326 * 297.11837 * 11 10 9 38 38 H 0.96998 * 120.00252 * 334.99754 * 14 12 6 39 39 H 0.97001 * 119.99637 * 179.97438 * 20 19 17 40 40 H 1.07997 * 119.99992 * 179.72341 * 25 5 4 41 41 H 1.08000 * 120.00045 * 180.25397 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 1 6.1421 0.9659 -0.3505 8 8 6.2553 -1.0320 -0.8655 9 6 7.6795 -1.1034 -0.9593 10 6 8.2662 -1.3998 0.4232 11 6 7.8197 -0.3104 1.4032 12 6 6.2891 -0.2520 1.4217 13 1 5.8929 -1.1989 1.7884 14 7 5.8500 0.8354 2.2997 15 6 5.7225 0.6222 3.6243 16 8 5.9717 -0.4737 4.0910 17 6 5.2843 1.7089 4.5017 18 1 5.1575 2.7054 4.1050 19 6 5.0295 1.4563 5.8554 20 7 5.2968 0.2821 6.3626 21 14 4.3072 2.7980 6.9359 22 1 2.8312 2.6455 6.9946 23 1 4.8710 2.6879 8.3053 24 1 4.6452 4.1274 6.3669 25 6 3.5805 -1.1971 -0.0053 26 6 2.1982 -1.1972 -0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 8.0679 -0.1520 -1.3227 33 1 7.9587 -1.8983 -1.6509 34 1 7.9100 -2.3699 0.7698 35 1 9.3545 -1.4110 0.3622 36 1 8.1877 -0.5453 2.4019 37 1 8.2175 0.6527 1.0837 38 1 5.6512 1.7089 1.9277 39 1 5.1206 0.1074 7.3004 40 1 4.1205 -2.1324 -0.0098 41 1 1.6582 -2.1325 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335852277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = -74.370250 kcal Electronic energy + Delta-G solvation = -23431.718558 eV Core-core repulsion = 20082.649140 eV Total energy + Delta-G solvation = -3349.069418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97550 -38.44519 -36.99324 -33.96564 -33.39605 -32.40087 -31.54175 -30.63994 -29.30256 -26.87225 -25.97715 -24.13710 -22.76938 -22.47591 -20.59181 -20.10652 -19.43636 -17.37279 -16.57703 -15.97803 -15.50951 -15.29708 -14.94290 -14.39805 -14.29225 -14.22866 -13.92446 -13.69830 -13.54148 -13.12212 -12.74607 -12.44958 -12.34554 -12.20060 -12.07433 -11.69696 -11.38775 -11.13972 -11.06551 -11.04292 -10.73843 -10.65403 -10.55266 -10.44991 -10.19293 -10.17233 -9.31932 -8.83355 -8.59594 -8.19424 -7.59025 -7.47948 -6.17634 -4.61282 1.58851 1.73538 3.14493 3.21593 3.24764 3.77886 4.06453 4.14449 4.60133 4.75729 5.02330 5.04862 5.11549 5.17645 5.22712 5.26159 5.32657 5.34622 5.39329 5.55622 5.64741 5.65833 5.76766 5.86506 5.90687 5.92312 5.97619 6.06661 6.23063 6.29214 6.31899 6.37412 6.65238 6.70658 6.76800 6.84881 6.87598 7.28800 7.36430 7.45441 7.93559 8.11462 8.34917 9.04737 9.55181 10.62089 10.81091 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.006530 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.967431 B = 4287.006304 C = 6172.968875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.098 4.098 5 C -0.070 4.070 6 C 0.127 3.873 7 H 0.063 0.937 8 O -0.374 6.374 9 C 0.062 3.938 10 C -0.154 4.154 11 C -0.132 4.132 12 C 0.138 3.862 13 H 0.084 0.916 14 N -0.755 5.755 15 C 0.560 3.440 16 O -0.579 6.579 17 C -0.545 4.545 18 H 0.066 0.934 19 C 0.089 3.911 20 N -0.768 5.768 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.087 4.087 26 C -0.124 4.124 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.377 0.623 39 H 0.267 0.733 40 H 0.123 0.877 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 0.609 -14.691 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.070 4.070 6 C 0.069 3.931 7 H 0.081 0.919 8 O -0.292 6.292 9 C -0.014 4.014 10 C -0.192 4.192 11 C -0.171 4.171 12 C 0.031 3.969 13 H 0.102 0.898 14 N -0.410 5.410 15 C 0.363 3.637 16 O -0.462 6.462 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.397 5.397 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.105 4.105 26 C -0.142 4.142 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.209 0.791 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.412 -0.466 -14.272 14.482 hybrid contribution -0.130 1.255 0.636 1.413 sum -2.542 0.789 -13.636 13.893 Atomic orbital electron populations 1.20758 0.91595 1.02695 1.01768 1.19864 0.95801 0.93347 1.00075 1.20876 0.93914 0.97356 1.01663 1.20832 0.94185 0.97051 0.99577 1.19419 0.93317 0.93718 1.00560 1.21126 0.90676 0.90762 0.90539 0.91900 1.87922 1.21010 1.54845 1.65467 1.22578 0.81031 1.01027 0.96809 1.22207 1.00650 1.00554 0.95807 1.22070 0.97046 0.97766 1.00261 1.21012 0.92797 0.94644 0.88461 0.89821 1.46051 1.74975 1.11787 1.08171 1.18170 0.77203 0.89139 0.79141 1.90594 1.54683 1.26676 1.74214 1.20856 1.48579 0.95291 0.93440 0.91540 1.25678 0.93590 0.95645 0.98149 1.70028 1.35249 1.21241 1.13141 0.86406 0.79568 0.81734 0.79337 1.19819 1.20485 1.18913 1.20914 0.93790 0.97951 0.97835 1.20961 0.94148 0.97336 1.01738 0.91595 0.91732 0.91670 0.86247 0.86242 0.93404 0.89049 0.90974 0.91197 0.90486 0.92444 0.79122 0.92196 0.85892 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.09 -1.30 5.88 -104.62 -0.62 -1.91 16 3 C -0.12 -1.74 9.70 -39.58 -0.38 -2.12 16 4 C -0.10 -1.52 9.56 -39.59 -0.38 -1.89 16 5 C -0.07 -1.17 4.64 -104.62 -0.49 -1.66 16 6 C 0.13 2.07 2.42 -27.84 -0.07 2.00 16 7 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 8 O -0.37 -5.79 9.72 -35.23 -0.34 -6.14 16 9 C 0.06 0.78 6.84 37.20 0.25 1.04 16 10 C -0.15 -2.14 6.14 -26.59 -0.16 -2.31 16 11 C -0.13 -2.32 5.61 -26.55 -0.15 -2.47 16 12 C 0.14 2.70 2.06 -67.79 -0.14 2.56 16 13 H 0.08 1.94 7.57 -51.93 -0.39 1.55 16 14 N -0.75 -16.78 4.73 -55.08 -0.26 -17.04 16 15 C 0.56 15.83 7.71 -12.99 -0.10 15.73 16 16 O -0.58 -18.69 14.71 5.20 0.08 -18.62 16 17 C -0.54 -15.41 9.53 -35.63 -0.34 -15.75 16 18 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 19 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 20 N -0.77 -23.19 11.85 55.55 0.66 -22.53 16 21 Si 0.90 20.32 29.56 -169.99 -5.03 15.29 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.09 -1.45 9.36 -39.58 -0.37 -1.82 16 26 C -0.12 -1.87 9.70 -39.58 -0.38 -2.25 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.12 1.60 8.04 -52.48 -0.42 1.18 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.38 7.47 8.47 -40.82 -0.35 7.13 16 39 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 40 H 0.12 2.01 7.77 -52.49 -0.41 1.60 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -34.44 341.83 -8.97 -43.41 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.18 Total: 9.78 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.06 Total: -9.31 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.40 Total: -39.57 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.27 Total: -24.75 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.44 -8.97 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335852277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.955 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds