Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38241 * 119.99895 * 2 1 4 4 C 1.38228 * 119.99618 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00679 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00472 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47619 * 340.02463 * 6 5 4 8 8 O 1.42903 * 109.48180 * 220.00114 * 6 5 4 9 9 C 1.42904 * 114.09377 * 178.85886 * 8 6 5 10 10 C 1.53085 * 109.41277 * 61.16115 * 9 8 6 11 11 C 1.53179 * 109.16630 * 302.38492 * 10 9 8 12 12 C 1.53091 * 109.47671 * 100.05695 * 6 5 4 13 13 H 1.09001 * 109.51992 * 57.69025 * 12 6 5 14 14 N 1.46499 * 109.52366 * 297.56378 * 12 6 5 15 15 C 1.34777 * 119.99846 * 155.00426 * 14 12 6 16 16 O 1.21689 * 119.99943 * 359.97438 * 15 14 12 17 17 C 1.46375 * 120.00068 * 179.97438 * 15 14 12 18 18 H 1.08005 * 119.99818 * 353.94165 * 17 15 14 19 19 C 1.40048 * 120.00016 * 173.93779 * 17 15 14 20 20 N 1.30670 * 120.00048 * 6.14773 * 19 17 15 21 21 Si 1.86800 * 119.99700 * 186.15242 * 19 17 15 22 22 H 1.48499 * 109.47280 * 94.98408 * 21 19 17 23 23 H 1.48500 * 109.46880 * 214.98181 * 21 19 17 24 24 H 1.48500 * 109.47134 * 334.98025 * 21 19 17 25 25 C 1.38240 * 119.99507 * 0.25490 * 5 4 3 26 26 C 1.38232 * 120.00175 * 359.49478 * 25 5 4 27 27 H 1.09007 * 109.47046 * 90.00604 * 1 2 3 28 28 H 1.08997 * 109.47331 * 210.00459 * 1 2 3 29 29 H 1.09001 * 109.47637 * 330.00497 * 1 2 3 30 30 H 1.08003 * 119.99736 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.99557 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47986 * 301.17585 * 9 8 6 33 33 H 1.09007 * 109.47595 * 181.14410 * 9 8 6 34 34 H 1.09001 * 109.52637 * 62.29856 * 10 9 8 35 35 H 1.09002 * 109.51757 * 182.48391 * 10 9 8 36 36 H 1.08997 * 109.54400 * 176.85029 * 11 10 9 37 37 H 1.08997 * 109.54326 * 297.11837 * 11 10 9 38 38 H 0.96998 * 120.00252 * 334.99754 * 14 12 6 39 39 H 0.97001 * 119.99637 * 179.97438 * 20 19 17 40 40 H 1.07997 * 119.99992 * 179.72341 * 25 5 4 41 41 H 1.08000 * 120.00045 * 180.25397 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 1 6.1421 0.9659 -0.3505 8 8 6.2553 -1.0320 -0.8655 9 6 7.6795 -1.1034 -0.9593 10 6 8.2662 -1.3998 0.4232 11 6 7.8197 -0.3104 1.4032 12 6 6.2891 -0.2520 1.4217 13 1 5.8929 -1.1989 1.7884 14 7 5.8500 0.8354 2.2997 15 6 5.7225 0.6222 3.6243 16 8 5.9717 -0.4737 4.0910 17 6 5.2843 1.7089 4.5017 18 1 5.1575 2.7054 4.1050 19 6 5.0295 1.4563 5.8554 20 7 5.2968 0.2821 6.3626 21 14 4.3072 2.7980 6.9359 22 1 2.8312 2.6455 6.9946 23 1 4.8710 2.6879 8.3053 24 1 4.6452 4.1274 6.3669 25 6 3.5805 -1.1971 -0.0053 26 6 2.1982 -1.1972 -0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 8.0679 -0.1520 -1.3227 33 1 7.9587 -1.8983 -1.6509 34 1 7.9100 -2.3699 0.7698 35 1 9.3545 -1.4110 0.3622 36 1 8.1877 -0.5453 2.4019 37 1 8.2175 0.6527 1.0837 38 1 5.6512 1.7089 1.9277 39 1 5.1206 0.1074 7.3004 40 1 4.1205 -2.1324 -0.0098 41 1 1.6582 -2.1325 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335852277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -97.186711 kcal Electronic energy + Delta-G solvation = -23432.707954 eV Core-core repulsion = 20082.649140 eV Total energy + Delta-G solvation = -3350.058814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29192 -39.68911 -38.92622 -35.67180 -34.59702 -34.49335 -33.02694 -31.80361 -30.77380 -28.40353 -27.63881 -25.41788 -24.13217 -23.66170 -21.88462 -21.70082 -21.11644 -19.30215 -17.81075 -17.58307 -17.07853 -16.94500 -16.10212 -16.03386 -15.61406 -15.47787 -15.37510 -15.16064 -14.53666 -14.51876 -14.25953 -14.12998 -13.98270 -13.65375 -13.09593 -13.02843 -12.84297 -12.79614 -12.60535 -12.52418 -12.37937 -12.10136 -12.02132 -11.83597 -11.78162 -11.44985 -10.93343 -10.60421 -9.83836 -9.78390 -9.48181 -9.31970 -8.29466 -6.83942 0.40960 0.54711 1.38631 1.40099 1.55629 2.23022 2.48575 2.59770 2.85600 3.18091 3.58757 3.79686 3.85181 3.90484 3.94098 4.06667 4.08622 4.13161 4.19172 4.23510 4.49307 4.55736 4.61056 4.65676 4.84827 4.85677 4.87522 4.89074 4.96555 4.99606 5.18510 5.21047 5.28203 5.30961 5.32458 5.51929 5.67006 5.71815 5.88270 6.10655 6.16419 6.24548 6.34503 6.87650 7.56089 8.51340 8.68875 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.006530 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.967431 B = 4287.006304 C = 6172.968875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.109 4.109 5 C -0.095 4.095 6 C 0.142 3.858 7 H 0.086 0.914 8 O -0.385 6.385 9 C 0.059 3.941 10 C -0.147 4.147 11 C -0.129 4.129 12 C 0.139 3.861 13 H 0.035 0.965 14 N -0.740 5.740 15 C 0.545 3.455 16 O -0.632 6.632 17 C -0.571 4.571 18 H 0.087 0.913 19 C 0.030 3.970 20 N -0.823 5.823 21 Si 0.995 3.005 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.246 1.246 25 C -0.111 4.111 26 C -0.137 4.137 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.111 0.889 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 3.067 -16.121 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.095 4.095 6 C 0.084 3.916 7 H 0.104 0.896 8 O -0.303 6.303 9 C -0.017 4.017 10 C -0.185 4.185 11 C -0.168 4.168 12 C 0.033 3.967 13 H 0.053 0.947 14 N -0.394 5.394 15 C 0.349 3.651 16 O -0.519 6.519 17 C -0.608 4.608 18 H 0.105 0.895 19 C -0.185 4.185 20 N -0.453 5.453 21 Si 0.814 3.186 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.169 1.169 25 C -0.129 4.129 26 C -0.155 4.155 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.226 0.774 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.252 2.013 -15.773 16.230 hybrid contribution 0.149 0.424 1.020 1.115 sum -3.102 2.437 -14.753 15.272 Atomic orbital electron populations 1.20815 0.89099 1.03399 1.03270 1.20315 0.97743 0.92909 0.98650 1.21282 0.93832 0.98597 1.00828 1.21143 0.94983 0.97249 0.99275 1.19625 0.93677 0.94350 1.01880 1.20920 0.90704 0.91910 0.88100 0.89615 1.87934 1.22955 1.54761 1.64680 1.22850 0.79339 1.03421 0.96073 1.22188 1.02506 0.98093 0.95750 1.21988 0.95397 1.00241 0.99163 1.21069 0.94118 0.91498 0.90024 0.94673 1.45640 1.73816 1.13085 1.06846 1.18531 0.76868 0.88620 0.81069 1.90552 1.56941 1.28585 1.75825 1.21393 1.48888 0.96131 0.94379 0.89490 1.26949 0.93317 0.98496 0.99765 1.70204 1.36768 1.24350 1.13972 0.85054 0.78570 0.78240 0.76731 1.18923 1.19819 1.16889 1.21033 0.94825 0.97853 0.99180 1.21244 0.93745 0.98772 1.01756 0.89578 0.91332 0.90679 0.83617 0.84346 0.91035 0.86131 0.92723 0.88274 0.94826 0.90391 0.77420 0.91722 0.87039 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.10 -2.62 5.88 -19.86 -0.12 -2.74 16 3 C -0.13 -3.46 9.70 22.27 0.22 -3.25 16 4 C -0.11 -3.21 9.56 22.27 0.21 -3.00 16 5 C -0.10 -3.20 4.64 -19.87 -0.09 -3.29 16 6 C 0.14 4.58 2.42 29.88 0.07 4.65 16 7 H 0.09 2.37 8.00 -2.39 -0.02 2.35 16 8 O -0.38 -11.61 9.72 -148.98 -1.45 -13.06 16 9 C 0.06 1.35 6.84 72.01 0.49 1.84 16 10 C -0.15 -4.01 6.14 30.68 0.19 -3.83 16 11 C -0.13 -4.64 5.61 30.71 0.17 -4.46 16 12 C 0.14 5.67 2.06 45.08 0.09 5.76 16 13 H 0.03 1.77 7.57 -2.39 -0.02 1.75 16 14 N -0.74 -33.72 4.73 -446.39 -2.11 -35.83 16 15 C 0.54 32.09 7.71 86.36 0.67 32.76 16 16 O -0.63 -43.35 14.71 -4.31 -0.06 -43.42 16 17 C -0.57 -32.71 9.53 24.83 0.24 -32.47 16 18 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 19 C 0.03 1.67 5.49 85.30 0.47 2.14 16 20 N -0.82 -51.41 11.85 21.84 0.26 -51.16 16 21 Si 0.99 41.46 29.56 68.60 2.03 43.49 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 25 C -0.11 -3.82 9.36 22.27 0.21 -3.61 16 26 C -0.14 -4.16 9.70 22.27 0.22 -3.94 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 29 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.14 3.42 8.04 -2.91 -0.02 3.39 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.39 15.40 8.47 -92.71 -0.79 14.61 16 39 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 40 H 0.11 3.93 7.77 -2.91 -0.02 3.91 16 41 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -79.78 341.83 2.65 -77.13 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.24 Total: 37.72 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 3.75 Total: -14.88 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -1.85 Total: -86.99 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -1.51 Total: -56.48 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -79.78 2.65 -77.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335852277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.060 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds