Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.88230 * 2 1 4 4 C 1.37963 * 120.20889 * 180.28002 * 3 2 1 5 5 C 1.39598 * 119.96493 * 359.49206 * 4 3 2 6 6 C 1.47856 * 120.12107 * 180.25349 * 5 4 3 7 7 O 1.21555 * 120.00534 * 217.17200 * 6 5 4 8 8 N 1.34778 * 119.99796 * 37.17454 * 6 5 4 9 9 C 1.46929 * 120.63291 * 184.89135 * 8 6 5 10 10 C 1.52759 * 109.00842 * 233.58157 * 9 8 6 11 11 C 1.53030 * 109.38636 * 305.58572 * 10 9 8 12 12 C 1.50700 * 109.45193 * 181.25453 * 11 10 9 13 13 H 1.08003 * 119.99855 * 239.94341 * 12 11 10 14 14 C 1.37875 * 119.99784 * 59.94013 * 12 11 10 15 15 N 1.31513 * 120.00075 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47047 * 59.99947 * 16 14 12 18 18 H 1.48496 * 109.47071 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47262 * 300.00033 * 16 14 12 20 20 C 1.53041 * 109.53745 * 61.23966 * 11 10 9 21 21 C 1.46923 * 120.63249 * 5.16846 * 8 6 5 22 22 C 1.39489 * 119.76633 * 0.50716 * 5 4 3 23 23 C 1.38499 * 119.78714 * 359.74748 * 22 5 4 24 24 O 1.35919 * 119.98179 * 180.02562 * 23 22 5 25 25 H 1.08999 * 109.47163 * 89.99893 * 1 2 3 26 26 H 1.09005 * 109.46897 * 209.99757 * 1 2 3 27 27 H 1.09005 * 109.46951 * 329.99620 * 1 2 3 28 28 H 1.08005 * 119.89882 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.01509 * 179.72797 * 4 3 2 30 30 H 1.09005 * 109.58379 * 353.41835 * 9 8 6 31 31 H 1.09002 * 109.58716 * 113.84032 * 9 8 6 32 32 H 1.09002 * 109.56035 * 185.54895 * 10 9 8 33 33 H 1.08993 * 109.35937 * 65.50329 * 10 9 8 34 34 H 1.08997 * 109.46180 * 301.22245 * 11 10 9 35 35 H 0.97006 * 119.99809 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.50055 * 178.67876 * 20 11 10 37 37 H 1.09003 * 109.49485 * 58.58829 * 20 11 10 38 38 H 1.08993 * 109.59288 * 246.15979 * 21 8 6 39 39 H 1.09002 * 109.58477 * 6.44353 * 21 8 6 40 40 H 1.07991 * 120.10975 * 179.76851 * 22 5 4 41 41 H 0.96702 * 113.99724 * 269.98166 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5756 1.2069 -0.0058 5 6 4.2797 0.0015 -0.0010 6 6 5.7583 0.0059 -0.0016 7 8 6.3685 -0.8337 -0.6343 8 7 6.4296 0.9410 0.6995 9 6 7.8945 1.0250 0.6240 10 6 8.4691 0.9805 2.0387 11 6 7.8192 2.0771 2.8856 12 6 8.4072 2.0545 4.2729 13 1 7.7689 1.8839 5.1273 14 6 9.7601 2.2516 4.4515 15 7 10.5374 2.4589 3.4111 16 14 10.4892 2.2230 6.1711 17 1 10.2340 0.8997 6.7950 18 1 11.9532 2.4583 6.0920 19 1 9.8599 3.2874 6.9934 20 6 6.3104 1.8341 2.9673 21 6 5.7110 1.8918 1.5587 22 6 3.5836 -1.2072 -0.0011 23 6 2.1986 -1.2035 -0.0006 24 8 1.5162 -2.3790 -0.0001 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6524 2.1323 0.0004 29 1 4.1105 2.1451 -0.0102 30 1 8.2796 0.1834 0.0481 31 1 8.1827 1.9607 0.1448 32 1 9.5465 1.1410 2.0002 33 1 8.2615 0.0070 2.4826 34 1 8.0063 3.0484 2.4277 35 1 11.4892 2.5979 3.5369 36 1 5.8514 2.6020 3.5899 37 1 6.1231 0.8524 3.4025 38 1 5.8173 2.8995 1.1574 39 1 4.6552 1.6234 1.5974 40 1 4.1227 -2.1429 -0.0011 41 1 1.3182 -2.7192 -0.8833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335906090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = -57.133582 kcal Electronic energy + Delta-G solvation = -22972.580620 eV Core-core repulsion = 19624.258640 eV Total energy + Delta-G solvation = -3348.321980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55668 -39.20370 -36.89756 -36.63324 -33.67139 -32.89694 -31.09735 -30.55809 -29.84983 -27.53811 -26.08285 -23.48520 -23.09576 -22.16465 -21.79498 -20.23058 -18.94257 -18.03546 -16.77298 -16.34486 -16.16348 -15.72313 -15.29256 -14.90276 -14.57421 -14.54683 -14.03117 -13.55070 -13.40387 -13.13119 -12.86943 -12.70940 -12.59201 -12.40635 -12.23556 -11.97168 -11.83648 -11.33915 -11.16551 -10.92622 -10.82737 -10.66050 -10.43714 -10.09388 -9.63392 -9.58301 -9.20699 -9.00442 -8.93847 -8.60946 -8.37849 -8.03088 -6.02573 -4.09320 0.79639 1.11416 2.85610 3.30079 3.33190 3.35254 3.37680 3.64547 4.05288 4.40910 4.54129 4.63970 4.78223 4.94272 5.16322 5.27140 5.31800 5.38655 5.46555 5.50603 5.71108 5.73889 5.82694 5.91380 5.98699 6.10839 6.21986 6.24493 6.27456 6.39805 6.44282 6.55147 6.61504 6.82234 6.95052 7.17860 7.32226 7.44206 7.68316 7.84119 7.92036 8.05145 8.39184 8.47676 8.93710 9.55847 11.02852 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.003643 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.002714 B = 7685.002814 C = 8011.093409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.093 4.093 5 C -0.109 4.109 6 C 0.552 3.448 7 O -0.549 6.549 8 N -0.591 5.591 9 C 0.109 3.891 10 C -0.124 4.124 11 C 0.049 3.951 12 C -0.514 4.514 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.125 4.125 21 C 0.093 3.907 22 C -0.088 4.088 23 C 0.094 3.906 24 O -0.494 6.494 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.989 -2.250 -8.763 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.340 3.660 7 O -0.429 6.429 8 N -0.322 5.322 9 C -0.012 4.012 10 C -0.162 4.162 11 C 0.030 3.970 12 C -0.552 4.552 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.163 4.163 21 C -0.029 4.029 22 C -0.107 4.107 23 C 0.049 3.951 24 O -0.303 6.303 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.155 0.845 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -17.406 -2.580 -8.515 19.548 hybrid contribution 0.503 -0.039 0.542 0.741 sum -16.903 -2.619 -7.973 18.872 Atomic orbital electron populations 1.20732 0.90524 1.03437 1.02353 1.20369 0.96851 0.92540 0.99813 1.20895 0.93693 0.97417 1.01249 1.21548 0.94307 0.97746 0.97567 1.19861 0.93671 0.93773 1.03933 1.18272 0.86671 0.81239 0.79837 1.90739 1.69501 1.37848 1.44785 1.48154 1.08478 1.31998 1.43582 1.21852 0.77173 1.01374 1.00811 1.21946 1.03923 0.99314 0.91044 1.18636 0.88174 0.94578 0.95565 1.21150 0.92897 1.48872 0.92328 0.92757 1.24961 0.97234 0.95024 0.96713 1.69830 1.05055 1.49010 1.29064 0.86671 0.77970 0.78553 0.84879 1.20329 1.21298 1.20305 1.22027 1.00018 1.01162 0.93082 1.22315 0.96186 0.92086 0.92353 1.21447 0.93130 0.98318 0.97828 1.18097 0.89311 0.85075 1.02582 1.84826 1.75943 1.36138 1.33411 0.91166 0.90738 0.91227 0.84984 0.84407 0.90474 0.92059 0.87697 0.94310 0.95435 0.92877 0.91965 0.92842 0.91648 0.89981 0.84534 0.75643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.78 36.01 0.35 -0.49 16 2 C -0.09 -0.97 5.90 -104.39 -0.62 -1.59 16 3 C -0.11 -1.16 9.67 -39.67 -0.38 -1.54 16 4 C -0.09 -1.13 7.35 -39.18 -0.29 -1.41 16 5 C -0.11 -1.63 5.25 -104.99 -0.55 -2.18 16 6 C 0.55 10.12 7.37 -12.32 -0.09 10.03 16 7 O -0.55 -11.72 16.28 5.32 0.09 -11.63 16 8 N -0.59 -10.82 2.98 -174.14 -0.52 -11.34 16 9 C 0.11 2.19 6.41 -3.93 -0.03 2.17 16 10 C -0.12 -2.88 5.14 -26.84 -0.14 -3.02 16 11 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 12 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 13 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.76 11.30 55.43 0.63 -24.13 16 16 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.12 -2.44 5.30 -26.61 -0.14 -2.58 16 21 C 0.09 1.51 4.82 -3.71 -0.02 1.49 16 22 C -0.09 -1.22 9.56 -39.02 -0.37 -1.60 16 23 C 0.09 1.10 6.67 -39.27 -0.26 0.84 16 24 O -0.49 -4.92 12.53 -19.49 -0.24 -5.17 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.14 1.52 6.21 -52.49 -0.33 1.19 16 30 H 0.08 1.58 7.00 -51.93 -0.36 1.22 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.11 2.71 6.03 -51.93 -0.31 2.39 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.08 1.15 4.50 -51.93 -0.23 0.92 16 40 H 0.14 1.96 8.03 -52.49 -0.42 1.54 16 41 H 0.39 2.01 9.06 45.56 0.41 2.43 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -31.38 330.55 -8.18 -39.55 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.97 Total: 3.11 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.11 Total: -11.36 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.11 Total: -35.47 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.16 Total: -16.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.38 -8.18 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335906090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.580 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds