Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.88230 * 2 1 4 4 C 1.37963 * 120.20889 * 180.28002 * 3 2 1 5 5 C 1.39598 * 119.96493 * 359.49206 * 4 3 2 6 6 C 1.47856 * 120.12107 * 180.25349 * 5 4 3 7 7 O 1.21555 * 120.00534 * 217.17200 * 6 5 4 8 8 N 1.34778 * 119.99796 * 37.17454 * 6 5 4 9 9 C 1.46929 * 120.63291 * 184.89135 * 8 6 5 10 10 C 1.52759 * 109.00842 * 233.58157 * 9 8 6 11 11 C 1.53030 * 109.38636 * 305.58572 * 10 9 8 12 12 C 1.50700 * 109.45193 * 181.25453 * 11 10 9 13 13 H 1.08003 * 119.99855 * 239.94341 * 12 11 10 14 14 C 1.37875 * 119.99784 * 59.94013 * 12 11 10 15 15 N 1.31513 * 120.00075 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47047 * 59.99947 * 16 14 12 18 18 H 1.48496 * 109.47071 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47262 * 300.00033 * 16 14 12 20 20 C 1.53041 * 109.53745 * 61.23966 * 11 10 9 21 21 C 1.46923 * 120.63249 * 5.16846 * 8 6 5 22 22 C 1.39489 * 119.76633 * 0.50716 * 5 4 3 23 23 C 1.38499 * 119.78714 * 359.74748 * 22 5 4 24 24 O 1.35919 * 119.98179 * 180.02562 * 23 22 5 25 25 H 1.08999 * 109.47163 * 89.99893 * 1 2 3 26 26 H 1.09005 * 109.46897 * 209.99757 * 1 2 3 27 27 H 1.09005 * 109.46951 * 329.99620 * 1 2 3 28 28 H 1.08005 * 119.89882 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.01509 * 179.72797 * 4 3 2 30 30 H 1.09005 * 109.58379 * 353.41835 * 9 8 6 31 31 H 1.09002 * 109.58716 * 113.84032 * 9 8 6 32 32 H 1.09002 * 109.56035 * 185.54895 * 10 9 8 33 33 H 1.08993 * 109.35937 * 65.50329 * 10 9 8 34 34 H 1.08997 * 109.46180 * 301.22245 * 11 10 9 35 35 H 0.97006 * 119.99809 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.50055 * 178.67876 * 20 11 10 37 37 H 1.09003 * 109.49485 * 58.58829 * 20 11 10 38 38 H 1.08993 * 109.59288 * 246.15979 * 21 8 6 39 39 H 1.09002 * 109.58477 * 6.44353 * 21 8 6 40 40 H 1.07991 * 120.10975 * 179.76851 * 22 5 4 41 41 H 0.96702 * 113.99724 * 269.98166 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5756 1.2069 -0.0058 5 6 4.2797 0.0015 -0.0010 6 6 5.7583 0.0059 -0.0016 7 8 6.3685 -0.8337 -0.6343 8 7 6.4296 0.9410 0.6995 9 6 7.8945 1.0250 0.6240 10 6 8.4691 0.9805 2.0387 11 6 7.8192 2.0771 2.8856 12 6 8.4072 2.0545 4.2729 13 1 7.7689 1.8839 5.1273 14 6 9.7601 2.2516 4.4515 15 7 10.5374 2.4589 3.4111 16 14 10.4892 2.2230 6.1711 17 1 10.2340 0.8997 6.7950 18 1 11.9532 2.4583 6.0920 19 1 9.8599 3.2874 6.9934 20 6 6.3104 1.8341 2.9673 21 6 5.7110 1.8918 1.5587 22 6 3.5836 -1.2072 -0.0011 23 6 2.1986 -1.2035 -0.0006 24 8 1.5162 -2.3790 -0.0001 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6524 2.1323 0.0004 29 1 4.1105 2.1451 -0.0102 30 1 8.2796 0.1834 0.0481 31 1 8.1827 1.9607 0.1448 32 1 9.5465 1.1410 2.0002 33 1 8.2615 0.0070 2.4826 34 1 8.0063 3.0484 2.4277 35 1 11.4892 2.5979 3.5369 36 1 5.8514 2.6020 3.5899 37 1 6.1231 0.8524 3.4025 38 1 5.8173 2.8995 1.1574 39 1 4.6552 1.6234 1.5974 40 1 4.1227 -2.1429 -0.0011 41 1 1.3182 -2.7192 -0.8833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335906090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = -77.167821 kcal Electronic energy + Delta-G solvation = -22973.449370 eV Core-core repulsion = 19624.258640 eV Total energy + Delta-G solvation = -3349.190730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73187 -40.34102 -38.46864 -37.56719 -35.43170 -33.90620 -32.87836 -31.97613 -30.88684 -28.68596 -27.66934 -25.06840 -24.29333 -23.42088 -23.02059 -21.60523 -20.37669 -19.22783 -18.46594 -17.76035 -17.29906 -16.85433 -16.53316 -16.42745 -16.00239 -15.83077 -15.04731 -14.92728 -14.61905 -14.57909 -14.25956 -14.15415 -13.98750 -13.48224 -13.19486 -13.16633 -13.02621 -12.80616 -12.74571 -12.56000 -12.25537 -12.18146 -11.96550 -11.71940 -11.45410 -11.17007 -10.89121 -10.76315 -10.41714 -9.92321 -9.65690 -9.47709 -8.08714 -6.22599 -0.17019 0.22892 1.41555 1.42842 1.49914 1.60487 1.98795 2.43107 2.61830 3.17918 3.20977 3.45475 3.81887 3.93129 3.98514 4.15806 4.26249 4.28983 4.38493 4.45803 4.56814 4.64902 4.69200 4.76308 4.85011 4.87313 4.92106 4.95035 5.12891 5.16857 5.21488 5.25060 5.30442 5.41705 5.47150 5.50090 5.64693 5.78311 5.96052 6.08220 6.37109 6.41759 6.80532 6.88135 7.03834 7.45537 8.94607 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.003643 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.002714 B = 7685.002814 C = 8011.093409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.103 4.103 4 C -0.094 4.094 5 C -0.132 4.132 6 C 0.549 3.451 7 O -0.590 6.590 8 N -0.594 5.594 9 C 0.119 3.881 10 C -0.113 4.113 11 C 0.046 3.954 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.268 1.268 20 C -0.118 4.118 21 C 0.099 3.901 22 C -0.108 4.108 23 C 0.095 3.905 24 O -0.501 6.501 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.170 0.830 29 H 0.151 0.849 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.016 0.984 34 H 0.010 0.990 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 -1.004 -8.691 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.339 3.661 7 O -0.473 6.473 8 N -0.325 5.325 9 C -0.003 4.003 10 C -0.151 4.151 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.554 5.554 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.156 4.156 21 C -0.022 4.022 22 C -0.128 4.128 23 C 0.050 3.950 24 O -0.314 6.314 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.187 0.813 29 H 0.169 0.831 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.035 0.965 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -20.674 -1.330 -8.445 22.372 hybrid contribution 1.424 -0.488 0.499 1.585 sum -19.250 -1.817 -7.946 20.905 Atomic orbital electron populations 1.20812 0.88076 1.04156 1.03775 1.20769 0.98566 0.91852 0.97687 1.21298 0.92798 0.98854 0.99153 1.21697 0.95349 0.96884 0.97310 1.19617 0.91222 0.95456 1.07248 1.18892 0.88342 0.80077 0.78750 1.90702 1.70799 1.39324 1.46460 1.48177 1.07554 1.32666 1.44064 1.21537 0.78859 1.01449 0.98427 1.21710 1.02400 0.98012 0.93012 1.18611 0.91114 0.93492 0.94046 1.21558 0.93352 1.48701 0.93688 0.93012 1.25698 0.97765 0.94878 1.00123 1.69961 1.05105 1.49640 1.30731 0.85734 0.77214 0.78586 0.80847 1.20275 1.21073 1.19336 1.21905 0.97222 1.00792 0.95726 1.22446 0.97162 0.92814 0.89789 1.21428 0.94415 0.97438 0.99501 1.18137 0.88458 0.86325 1.02088 1.84771 1.75406 1.35789 1.35388 0.89237 0.91092 0.89475 0.81265 0.83113 0.91468 0.91071 0.90598 0.96471 0.97219 0.93003 0.90414 0.94253 0.89372 0.86970 0.86449 0.73198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.78 71.24 0.70 -0.45 16 2 C -0.09 -1.47 5.90 -19.72 -0.12 -1.59 16 3 C -0.10 -1.62 9.67 22.21 0.21 -1.41 16 4 C -0.09 -1.99 7.35 22.53 0.17 -1.82 16 5 C -0.13 -3.83 5.25 -20.10 -0.11 -3.94 16 6 C 0.55 20.41 7.37 86.79 0.64 21.05 16 7 O -0.59 -26.25 16.28 -3.89 -0.06 -26.32 16 8 N -0.59 -21.73 2.98 -823.12 -2.45 -24.19 16 9 C 0.12 4.95 6.41 86.22 0.55 5.50 16 10 C -0.11 -5.46 5.14 30.52 0.16 -5.31 16 11 C 0.05 2.22 2.07 -11.52 -0.02 2.19 16 12 C -0.53 -28.99 8.56 25.60 0.22 -28.77 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 14 C 0.01 0.77 5.30 84.65 0.45 1.22 16 15 N -0.91 -52.10 11.30 21.45 0.24 -51.86 16 16 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.12 -4.55 5.30 30.67 0.16 -4.39 16 21 C 0.10 3.04 4.82 86.36 0.42 3.45 16 22 C -0.11 -3.00 9.56 22.63 0.22 -2.78 16 23 C 0.09 2.03 6.67 22.47 0.15 2.18 16 24 O -0.50 -9.04 12.53 -92.64 -1.16 -10.20 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.83 7.52 -2.38 -0.02 0.81 16 27 H 0.09 0.64 8.08 -2.38 -0.02 0.62 16 28 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.15 2.76 6.21 -2.91 -0.02 2.74 16 30 H 0.07 2.90 7.00 -2.38 -0.02 2.88 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.08 4.12 6.03 -2.39 -0.01 4.11 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 39 H 0.11 2.82 4.50 -2.39 -0.01 2.81 16 40 H 0.12 3.57 8.03 -2.92 -0.02 3.55 16 41 H 0.41 3.40 9.06 -74.06 -0.67 2.73 16 Total: -1.00 -70.58 330.55 2.76 -67.81 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.38 Total: 14.14 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 3.79 Total: -14.85 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.21 Total: -76.05 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.22 Total: -36.52 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -70.58 2.76 -67.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335906090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.354 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds