Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.26177 * 2 1 4 4 C 1.50878 * 109.36756 * 119.68495 * 2 1 3 5 5 C 1.52570 * 109.36035 * 212.07572 * 4 2 1 6 6 C 1.47093 * 114.32317 * 274.99071 * 5 4 2 7 7 C 1.54857 * 110.32506 * 62.80087 * 6 5 4 8 8 N 1.44580 * 109.60026 * 288.72956 * 7 6 5 9 9 S 1.65600 * 118.64505 * 270.70763 * 8 7 6 10 10 O 1.42101 * 104.27577 * 333.92612 * 9 8 7 11 11 O 1.42097 * 104.27519 * 206.06909 * 9 8 7 12 12 C 1.81398 * 104.45230 * 89.99738 * 9 8 7 13 13 C 1.52991 * 109.47305 * 180.02562 * 12 9 8 14 14 C 1.50702 * 109.46998 * 180.02562 * 13 12 9 15 15 H 1.07996 * 120.00218 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99733 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46584 * 60.00199 * 18 16 14 20 20 H 1.48496 * 109.46974 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47042 * 300.00592 * 18 16 14 22 22 C 1.47604 * 122.71020 * 90.98511 * 8 7 6 23 23 H 1.08998 * 109.46731 * 300.31606 * 1 2 3 24 24 H 1.08999 * 109.47150 * 60.31490 * 1 2 3 25 25 H 1.09002 * 109.46695 * 180.31969 * 1 2 3 26 26 H 1.08997 * 109.47023 * 180.60318 * 3 2 1 27 27 H 1.08999 * 109.47351 * 300.60469 * 3 2 1 28 28 H 1.09008 * 109.47126 * 60.60701 * 3 2 1 29 29 H 1.08998 * 109.48982 * 92.10876 * 4 2 1 30 30 H 1.08997 * 109.49041 * 332.04561 * 4 2 1 31 31 H 1.08997 * 108.51091 * 153.73257 * 5 4 2 32 32 H 1.08996 * 108.50525 * 36.24266 * 5 4 2 33 33 H 1.09003 * 109.32606 * 302.53223 * 6 5 4 34 34 H 1.08999 * 109.18263 * 182.97266 * 6 5 4 35 35 H 1.09003 * 109.45269 * 168.69225 * 7 6 5 36 36 H 1.08999 * 109.42919 * 48.75656 * 7 6 5 37 37 H 1.09006 * 109.47071 * 59.99719 * 12 9 8 38 38 H 1.09006 * 109.46766 * 300.00489 * 12 9 8 39 39 H 1.08997 * 109.47149 * 60.00326 * 13 12 9 40 40 H 1.08996 * 109.47449 * 299.99773 * 13 12 9 41 41 H 0.97001 * 119.99842 * 179.97438 * 17 16 14 42 42 H 1.08999 * 108.94776 * 78.29905 * 22 8 7 43 43 H 1.09009 * 108.94497 * 196.92891 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2366 5 6 3.3488 -0.0768 1.6783 6 6 4.5358 -0.6193 0.9996 7 6 4.4645 -0.3320 -0.5204 8 7 3.4428 -1.1586 -1.1229 9 16 3.8630 -2.6602 -1.6805 10 8 5.2474 -2.5477 -1.9807 11 8 2.9122 -2.9341 -2.7003 12 6 3.6070 -3.7587 -0.2598 13 6 3.9661 -5.1930 -0.6529 14 6 3.7528 -6.1056 0.5272 15 1 3.3971 -5.7028 1.4640 16 6 4.0118 -7.4549 0.4109 17 7 4.4454 -7.9453 -0.7297 18 14 3.7480 -8.5861 1.8739 19 1 2.3247 -8.5288 2.2935 20 1 4.0953 -9.9784 1.4919 21 1 4.6137 -8.1502 2.9990 22 6 2.0417 -0.7169 -1.2669 23 1 -0.3633 0.5187 0.8871 24 1 -0.3633 0.5089 -0.8928 25 1 -0.3633 -1.0277 0.0057 26 1 3.1247 1.4482 -0.0108 27 1 1.6607 1.9599 -0.8845 28 1 1.6785 1.9537 0.8954 29 1 2.1867 -1.7607 1.0152 30 1 1.2948 -0.6054 2.0347 31 1 3.4631 -0.2306 2.7513 32 1 3.3017 0.9955 1.4890 33 1 4.5832 -1.6962 1.1615 34 1 5.4296 -0.1526 1.4135 35 1 5.4285 -0.5555 -0.9776 36 1 4.2221 0.7187 -0.6798 37 1 2.5622 -3.7167 0.0483 38 1 4.2424 -3.4386 0.5660 39 1 5.0109 -5.2346 -0.9606 40 1 3.3310 -5.5132 -1.4788 41 1 4.6280 -8.8944 -0.8115 42 1 1.9705 -0.0369 -2.1158 43 1 1.4142 -1.5874 -1.4590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336180641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = -80.001462 kcal Electronic energy + Delta-G solvation = -23045.021229 eV Core-core repulsion = 19831.151574 eV Total energy + Delta-G solvation = -3213.869655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94349 -36.69463 -35.44695 -34.68678 -33.92868 -33.45783 -31.14775 -28.39220 -27.56551 -25.82361 -25.58897 -24.08140 -21.83452 -20.51830 -18.68032 -18.36612 -17.47702 -16.70146 -16.47582 -15.70849 -15.14088 -15.11254 -14.56803 -14.37367 -14.08009 -13.54396 -13.38690 -13.24950 -13.00189 -12.57537 -12.43317 -12.20014 -12.12991 -11.83022 -11.76438 -11.56471 -11.53921 -11.27733 -11.17377 -11.03932 -10.93798 -10.68710 -10.51816 -10.36462 -10.32403 -10.28924 -9.95858 -9.69829 -9.28352 -8.68267 -8.48954 -6.11179 -4.16694 0.80770 3.05068 3.27538 3.32386 3.34180 4.30238 4.39454 4.45769 4.54303 4.65329 4.75774 4.85662 4.94177 5.07142 5.20592 5.23901 5.36605 5.41824 5.49313 5.53918 5.56859 5.58112 5.70667 5.73095 5.74740 5.82852 5.93770 5.98737 6.02853 6.09981 6.15036 6.24319 6.27562 6.32543 6.38352 6.59751 6.86493 7.31561 7.37778 7.81591 8.19059 8.86415 9.47871 10.99865 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.005140 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.490476 B = 5445.663351 C = 5877.955686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.109 4.109 5 C -0.131 4.131 6 C -0.148 4.148 7 C 0.106 3.894 8 N -0.995 5.995 9 S 2.584 3.416 10 O -0.965 6.965 11 O -0.966 6.966 12 C -0.591 4.591 13 C 0.029 3.971 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.132 3.868 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.265 0.735 42 H 0.065 0.935 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 19.287 3.749 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.212 4.212 4 C -0.147 4.147 5 C -0.168 4.168 6 C -0.187 4.187 7 C -0.020 4.020 8 N -0.830 5.830 9 S 2.683 3.317 10 O -0.955 6.955 11 O -0.957 6.957 12 C -0.724 4.724 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C 0.007 3.993 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.624 19.009 2.739 19.754 hybrid contribution -0.366 -0.803 1.530 1.766 sum -4.990 18.206 4.268 19.354 Atomic orbital electron populations 1.21912 0.93888 1.02305 1.01859 1.20701 0.95617 0.95885 0.95428 1.22382 1.02302 0.95167 1.01315 1.21180 0.96667 1.00551 0.96301 1.20648 0.94484 1.01832 0.99806 1.21435 0.98623 1.02472 0.96210 1.21538 0.91559 0.96509 0.92369 1.57302 1.15089 1.33744 1.76893 1.05861 0.74145 0.74032 0.77665 1.93517 1.33080 1.85085 1.83825 1.93531 1.63321 1.84192 1.54613 1.30596 1.10187 1.13997 1.17643 1.18944 0.97945 0.85417 0.98670 1.20958 1.45707 0.92113 0.97098 0.92142 1.25062 0.94919 0.98278 0.96162 1.69947 1.44525 1.13903 1.24516 0.86541 0.78711 0.79625 0.82461 1.20104 1.21065 1.20095 1.21771 0.80631 1.00246 0.96626 0.92335 0.92488 0.92142 0.90559 0.93010 0.92591 0.91319 0.91811 0.92720 0.90634 0.91444 0.90731 0.88946 0.89536 0.86376 0.86186 0.94938 0.94967 0.92489 0.91661 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.15 37.16 0.30 -0.91 16 2 C -0.07 -0.72 0.75 -154.90 -0.12 -0.84 16 3 C -0.16 -1.26 6.75 37.15 0.25 -1.01 16 4 C -0.11 -1.13 4.90 -28.02 -0.14 -1.27 16 5 C -0.13 -1.25 4.99 -29.79 -0.15 -1.40 16 6 C -0.15 -1.60 5.74 -28.59 -0.16 -1.77 16 7 C 0.11 1.25 5.52 -4.09 -0.02 1.23 16 8 N -1.00 -13.76 2.46 -113.10 -0.28 -14.04 16 9 S 2.58 48.01 5.31 -107.50 -0.57 47.44 16 10 O -0.96 -20.33 16.42 -57.54 -0.94 -21.28 16 11 O -0.97 -20.49 16.69 -57.54 -0.96 -21.45 16 12 C -0.59 -11.53 5.54 37.15 0.21 -11.33 16 13 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 18 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.13 1.60 4.82 -2.76 -0.01 1.58 16 23 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.62 3.16 -51.93 -0.16 0.45 16 27 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 7.90 -51.92 -0.41 0.00 16 29 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 30 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.62 4.66 -51.93 -0.24 0.38 16 33 H 0.07 0.83 6.06 -51.93 -0.31 0.52 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.19 6.75 -51.93 -0.35 0.84 16 36 H 0.09 0.82 5.21 -51.93 -0.27 0.55 16 37 H 0.12 2.08 7.56 -51.92 -0.39 1.69 16 38 H 0.12 2.13 6.24 -51.92 -0.32 1.80 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 43 H 0.08 1.09 7.02 -51.92 -0.36 0.73 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -33.43 329.57 -9.37 -42.79 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.90 Total: -0.54 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -0.39 Total: -28.26 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.46 Total: -39.93 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -1.91 Total: -42.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -0.57 Total: 47.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.43 -9.37 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336180641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.207 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds