Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.26177 * 2 1 4 4 C 1.50878 * 109.36756 * 119.68495 * 2 1 3 5 5 C 1.52570 * 109.36035 * 212.07572 * 4 2 1 6 6 C 1.47093 * 114.32317 * 274.99071 * 5 4 2 7 7 C 1.54857 * 110.32506 * 62.80087 * 6 5 4 8 8 N 1.44580 * 109.60026 * 288.72956 * 7 6 5 9 9 S 1.65600 * 118.64505 * 270.70763 * 8 7 6 10 10 O 1.42101 * 104.27577 * 333.92612 * 9 8 7 11 11 O 1.42097 * 104.27519 * 206.06909 * 9 8 7 12 12 C 1.81398 * 104.45230 * 89.99738 * 9 8 7 13 13 C 1.52991 * 109.47305 * 180.02562 * 12 9 8 14 14 C 1.50702 * 109.46998 * 180.02562 * 13 12 9 15 15 H 1.07996 * 120.00218 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99733 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46584 * 60.00199 * 18 16 14 20 20 H 1.48496 * 109.46974 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47042 * 300.00592 * 18 16 14 22 22 C 1.47604 * 122.71020 * 90.98511 * 8 7 6 23 23 H 1.08998 * 109.46731 * 300.31606 * 1 2 3 24 24 H 1.08999 * 109.47150 * 60.31490 * 1 2 3 25 25 H 1.09002 * 109.46695 * 180.31969 * 1 2 3 26 26 H 1.08997 * 109.47023 * 180.60318 * 3 2 1 27 27 H 1.08999 * 109.47351 * 300.60469 * 3 2 1 28 28 H 1.09008 * 109.47126 * 60.60701 * 3 2 1 29 29 H 1.08998 * 109.48982 * 92.10876 * 4 2 1 30 30 H 1.08997 * 109.49041 * 332.04561 * 4 2 1 31 31 H 1.08997 * 108.51091 * 153.73257 * 5 4 2 32 32 H 1.08996 * 108.50525 * 36.24266 * 5 4 2 33 33 H 1.09003 * 109.32606 * 302.53223 * 6 5 4 34 34 H 1.08999 * 109.18263 * 182.97266 * 6 5 4 35 35 H 1.09003 * 109.45269 * 168.69225 * 7 6 5 36 36 H 1.08999 * 109.42919 * 48.75656 * 7 6 5 37 37 H 1.09006 * 109.47071 * 59.99719 * 12 9 8 38 38 H 1.09006 * 109.46766 * 300.00489 * 12 9 8 39 39 H 1.08997 * 109.47149 * 60.00326 * 13 12 9 40 40 H 1.08996 * 109.47449 * 299.99773 * 13 12 9 41 41 H 0.97001 * 119.99842 * 179.97438 * 17 16 14 42 42 H 1.08999 * 108.94776 * 78.29905 * 22 8 7 43 43 H 1.09009 * 108.94497 * 196.92891 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2366 5 6 3.3488 -0.0768 1.6783 6 6 4.5358 -0.6193 0.9996 7 6 4.4645 -0.3320 -0.5204 8 7 3.4428 -1.1586 -1.1229 9 16 3.8630 -2.6602 -1.6805 10 8 5.2474 -2.5477 -1.9807 11 8 2.9122 -2.9341 -2.7003 12 6 3.6070 -3.7587 -0.2598 13 6 3.9661 -5.1930 -0.6529 14 6 3.7528 -6.1056 0.5272 15 1 3.3971 -5.7028 1.4640 16 6 4.0118 -7.4549 0.4109 17 7 4.4454 -7.9453 -0.7297 18 14 3.7480 -8.5861 1.8739 19 1 2.3247 -8.5288 2.2935 20 1 4.0953 -9.9784 1.4919 21 1 4.6137 -8.1502 2.9990 22 6 2.0417 -0.7169 -1.2669 23 1 -0.3633 0.5187 0.8871 24 1 -0.3633 0.5089 -0.8928 25 1 -0.3633 -1.0277 0.0057 26 1 3.1247 1.4482 -0.0108 27 1 1.6607 1.9599 -0.8845 28 1 1.6785 1.9537 0.8954 29 1 2.1867 -1.7607 1.0152 30 1 1.2948 -0.6054 2.0347 31 1 3.4631 -0.2306 2.7513 32 1 3.3017 0.9955 1.4890 33 1 4.5832 -1.6962 1.1615 34 1 5.4296 -0.1526 1.4135 35 1 5.4285 -0.5555 -0.9776 36 1 4.2221 0.7187 -0.6798 37 1 2.5622 -3.7167 0.0483 38 1 4.2424 -3.4386 0.5660 39 1 5.0109 -5.2346 -0.9606 40 1 3.3310 -5.5132 -1.4788 41 1 4.6280 -8.8944 -0.8115 42 1 1.9705 -0.0369 -2.1158 43 1 1.4142 -1.5874 -1.4590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336180641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = -102.251265 kcal Electronic energy + Delta-G solvation = -23045.986053 eV Core-core repulsion = 19831.151574 eV Total energy + Delta-G solvation = -3214.834478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79425 -38.30000 -37.06425 -35.93653 -35.63498 -34.41898 -33.14401 -29.20108 -28.23597 -27.60912 -26.75509 -25.00861 -23.64488 -21.58525 -19.91461 -19.37625 -19.02870 -18.29039 -17.74525 -17.14586 -16.56635 -16.49615 -16.21274 -15.32101 -15.07626 -14.99495 -14.49143 -14.37776 -14.14341 -13.88926 -13.73431 -13.41693 -13.25577 -13.21954 -13.02040 -12.92728 -12.86316 -12.81614 -12.70907 -12.26100 -12.19776 -12.15950 -11.91429 -11.75837 -11.47908 -11.33983 -11.11136 -11.04017 -10.70879 -10.64984 -9.85589 -8.27138 -6.41643 -0.71415 1.39233 1.42945 1.51227 1.72092 2.36862 2.80602 3.05869 3.14218 3.56635 3.82947 3.86608 3.97138 4.00726 4.07200 4.12671 4.22778 4.42979 4.58836 4.61169 4.66758 4.72765 4.82227 4.85488 4.90059 4.95400 5.08969 5.16700 5.20584 5.23410 5.24905 5.30211 5.32982 5.39286 5.43567 5.51923 5.53548 5.65933 5.71793 5.84739 6.04492 6.71221 7.28522 8.85069 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.005140 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.490476 B = 5445.663351 C = 5877.955686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.153 4.153 4 C -0.115 4.115 5 C -0.130 4.130 6 C -0.149 4.149 7 C 0.098 3.902 8 N -0.980 5.980 9 S 2.602 3.398 10 O -0.993 6.993 11 O -0.996 6.996 12 C -0.587 4.587 13 C 0.024 3.976 14 C -0.539 4.539 15 H 0.074 0.926 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.122 3.878 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.268 0.732 42 H 0.078 0.922 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 21.457 5.931 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.209 4.209 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.188 4.188 7 C -0.027 4.027 8 N -0.818 5.818 9 S 2.700 3.300 10 O -0.983 6.983 11 O -0.986 6.986 12 C -0.719 4.719 13 C -0.015 4.015 14 C -0.578 4.578 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.002 4.002 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.551 21.178 4.933 22.443 hybrid contribution -0.092 -1.386 0.814 1.610 sum -5.643 19.792 5.747 21.368 Atomic orbital electron populations 1.21920 0.92986 1.02048 1.02972 1.20682 0.96253 0.96587 0.93547 1.22358 1.02282 0.93814 1.02493 1.21246 0.97612 0.99405 0.97010 1.20656 0.93275 1.02896 0.99865 1.21471 1.00380 1.01452 0.95497 1.21833 0.90315 0.97651 0.92914 1.56935 1.16576 1.31446 1.76824 1.05019 0.73054 0.74898 0.77009 1.93472 1.34748 1.85844 1.84240 1.93483 1.63959 1.85279 1.55910 1.30492 1.11609 1.10640 1.19149 1.18790 0.95713 0.89375 0.97633 1.21450 1.45410 0.92902 0.98006 0.90781 1.26119 0.94394 1.00266 0.99314 1.70100 1.45800 1.14410 1.27083 0.85365 0.79307 0.77027 0.78571 1.18776 1.20823 1.18742 1.22078 0.79047 1.00276 0.98836 0.90876 0.91730 0.93159 0.90450 0.92286 0.91079 0.93508 0.90697 0.92182 0.88513 0.93525 0.88738 0.90257 0.86317 0.84629 0.84405 0.97726 0.97795 0.92345 0.90395 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.15 71.98 0.59 -1.48 16 2 C -0.07 -1.15 0.75 -52.43 -0.04 -1.19 16 3 C -0.15 -1.88 6.75 71.98 0.49 -1.39 16 4 C -0.12 -2.11 4.90 29.76 0.15 -1.96 16 5 C -0.13 -2.09 4.99 28.62 0.14 -1.95 16 6 C -0.15 -2.90 5.74 29.39 0.17 -2.73 16 7 C 0.10 2.12 5.52 87.37 0.48 2.61 16 8 N -0.98 -26.28 2.46 -511.74 -1.26 -27.53 16 9 S 2.60 99.21 5.31 -56.49 -0.30 98.91 16 10 O -0.99 -43.13 16.42 -127.65 -2.10 -45.23 16 11 O -1.00 -43.64 16.69 -127.65 -2.13 -45.77 16 12 C -0.59 -23.49 5.54 71.98 0.40 -23.09 16 13 C 0.02 1.28 4.98 29.85 0.15 1.43 16 14 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 15 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 18 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 C 0.12 2.77 4.82 86.61 0.42 3.19 16 23 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.92 3.16 -2.39 -0.01 0.91 16 27 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 28 H 0.07 0.71 7.90 -2.38 -0.02 0.69 16 29 H 0.05 1.06 6.44 -2.39 -0.02 1.04 16 30 H 0.07 1.21 7.74 -2.39 -0.02 1.19 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.17 4.66 -2.39 -0.01 1.16 16 33 H 0.05 1.10 6.06 -2.39 -0.01 1.09 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.97 6.75 -2.39 -0.02 1.95 16 36 H 0.12 1.86 5.21 -2.39 -0.01 1.85 16 37 H 0.14 4.86 7.56 -2.39 -0.02 4.84 16 38 H 0.14 4.95 6.24 -2.39 -0.01 4.93 16 39 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.08 1.59 7.98 -2.39 -0.02 1.57 16 43 H 0.07 1.83 7.02 -2.38 -0.02 1.82 16 Total: -1.00 -74.08 329.57 1.15 -72.93 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.99 Total: 14.77 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 3.63 Total: -56.44 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -0.97 Total: -84.87 kcal Atomic # 8 Polarization: -86.77 SS G_CDS: -4.23 Total: -91.00 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 99.21 SS G_CDS: -0.30 Total: 98.91 kcal Total: -74.08 1.15 -72.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336180641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.322 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds