Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37971 * 119.87922 * 2 1 4 4 C 1.38246 * 120.34976 * 180.02562 * 3 2 1 5 5 C 1.38392 * 119.76651 * 359.79142 * 4 3 2 6 6 C 1.37705 * 119.97954 * 0.03297 * 5 4 3 7 7 C 1.38925 * 120.77994 * 0.33196 * 6 5 4 8 8 O 1.36134 * 111.22549 * 178.93902 * 7 6 5 9 9 C 1.43767 * 109.24169 * 19.02798 * 8 7 6 10 10 H 1.09004 * 110.90118 * 213.85399 * 9 8 7 11 11 C 1.50693 * 110.74830 * 90.57616 * 9 8 7 12 12 O 1.21280 * 120.00212 * 357.48932 * 11 9 8 13 13 N 1.34779 * 119.99693 * 177.49294 * 11 9 8 14 14 C 1.46503 * 119.99679 * 185.14609 * 13 11 9 15 15 C 1.46500 * 120.00474 * 5.13999 * 13 11 9 16 16 H 1.09005 * 109.46468 * 0.02562 * 15 13 11 17 17 C 1.52999 * 109.46928 * 119.99864 * 15 13 11 18 18 C 1.50697 * 109.47242 * 240.00344 * 15 13 11 19 19 H 1.07994 * 120.00178 * 334.87001 * 18 15 13 20 20 C 1.37881 * 119.99976 * 154.86849 * 18 15 13 21 21 N 1.31521 * 119.99654 * 355.88856 * 20 18 15 22 22 Si 1.86790 * 120.00175 * 175.61031 * 20 18 15 23 23 H 1.48505 * 109.47208 * 59.99940 * 22 20 18 24 24 H 1.48504 * 109.47149 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47424 * 300.00037 * 22 20 18 26 26 C 1.51642 * 132.18308 * 180.35225 * 6 5 4 27 27 H 1.09004 * 109.47395 * 270.02089 * 1 2 3 28 28 H 1.08997 * 109.47235 * 30.01941 * 1 2 3 29 29 H 1.09004 * 109.47064 * 150.02023 * 1 2 3 30 30 H 1.08000 * 119.82646 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.11685 * 179.79262 * 4 3 2 32 32 H 1.08006 * 120.01077 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46781 * 275.10418 * 14 13 11 34 34 H 1.08996 * 109.47224 * 35.10160 * 14 13 11 35 35 H 1.09004 * 109.46776 * 155.10716 * 14 13 11 36 36 H 1.09006 * 109.46978 * 55.57218 * 17 15 13 37 37 H 1.09007 * 109.47083 * 175.56378 * 17 15 13 38 38 H 1.08998 * 109.47687 * 295.57013 * 17 15 13 39 39 H 0.96997 * 120.00183 * 5.28361 * 21 20 18 40 40 H 1.08999 * 110.94098 * 46.44739 * 26 6 5 41 41 H 1.08990 * 110.94091 * 282.75582 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5768 1.2077 -0.0005 5 6 4.2737 0.0120 0.0033 6 6 3.5897 -1.1831 0.0069 7 6 2.2007 -1.2073 -0.0001 8 8 1.7301 -2.4846 -0.0183 9 6 2.7682 -3.3783 0.4181 10 1 2.7024 -4.3342 -0.1017 11 6 2.7074 -3.5790 1.9104 12 8 1.8850 -2.9794 2.5699 13 7 3.5671 -4.4248 2.5121 14 6 3.4363 -4.7063 3.9438 15 6 4.6323 -5.0627 1.7345 16 1 4.5712 -4.7342 0.6969 17 6 5.9925 -4.6693 2.3143 18 6 4.4730 -6.5599 1.7981 19 1 3.9612 -7.0134 2.6339 20 6 4.9807 -7.3507 0.7891 21 7 5.5322 -6.7948 -0.2676 22 14 4.8923 -9.2114 0.9266 23 1 3.4723 -9.6330 1.0328 24 1 5.5019 -9.8264 -0.2798 25 1 5.6318 -9.6542 2.1360 26 6 4.0591 -2.6250 0.0184 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6496 2.1288 -0.0004 31 1 4.1110 2.1463 -0.0039 32 1 5.3538 0.0163 0.0033 33 1 3.9552 -3.9361 4.5145 34 1 2.3813 -4.7128 4.2180 35 1 3.8750 -5.6795 4.1643 36 1 6.0243 -4.9268 3.3730 37 1 6.7812 -5.2053 1.7863 38 1 6.1409 -3.5959 2.1967 39 1 5.6512 -5.8328 -0.3031 40 1 4.8426 -2.7737 0.7614 41 1 4.3988 -2.9319 -0.9706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336220261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = -44.356910 kcal Electronic energy + Delta-G solvation = -23855.394971 eV Core-core repulsion = 20507.627029 eV Total energy + Delta-G solvation = -3347.767942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31255 -38.93887 -37.20488 -35.86452 -33.41986 -32.85341 -31.02315 -29.75244 -29.38839 -26.67049 -26.49557 -25.02559 -23.63963 -21.99572 -21.68344 -20.71225 -19.09760 -17.55913 -16.94650 -16.76512 -16.11874 -15.41041 -15.14658 -14.71467 -14.43232 -13.89954 -13.63520 -13.58856 -13.40023 -13.09660 -12.97144 -12.81189 -12.43309 -12.23909 -11.96827 -11.79905 -11.66272 -11.52701 -11.37937 -11.31959 -11.25922 -11.00027 -10.88667 -10.69290 -10.28987 -10.18460 -9.37954 -9.06645 -8.62158 -8.54764 -7.86983 -7.75741 -6.62444 -4.39073 1.39754 1.49442 3.03147 3.31412 3.33101 3.35099 3.51451 3.81007 3.85778 4.33289 4.59647 4.70110 4.93132 4.95076 5.03215 5.16216 5.33601 5.35608 5.51321 5.60180 5.71306 5.78255 5.83003 5.88962 5.95229 6.01617 6.03463 6.08548 6.30987 6.32391 6.35917 6.44995 6.47687 6.50701 6.62061 6.69835 6.76338 6.88649 7.30366 7.37005 7.73857 7.97772 8.31500 8.55874 8.75156 9.31546 10.73637 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004783 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.003225 B = 5853.105860 C = 6001.173495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.076 4.076 6 C -0.168 4.168 7 C 0.119 3.881 8 O -0.276 6.276 9 C 0.069 3.931 10 H 0.145 0.855 11 C 0.496 3.504 12 O -0.553 6.553 13 N -0.583 5.583 14 C 0.096 3.904 15 C 0.228 3.772 16 H 0.059 0.941 17 C -0.149 4.149 18 C -0.609 4.609 19 H 0.059 0.941 20 C 0.029 3.971 21 N -0.902 5.902 22 Si 1.068 2.932 23 H -0.287 1.287 24 H -0.280 1.280 25 H -0.286 1.286 26 C -0.100 4.100 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.023 0.977 39 H 0.268 0.732 40 H 0.100 0.900 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 11.212 -0.130 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.110 4.110 4 C -0.169 4.169 5 C -0.094 4.094 6 C -0.168 4.168 7 C 0.073 3.927 8 O -0.188 6.188 9 C 0.010 3.990 10 H 0.162 0.838 11 C 0.282 3.718 12 O -0.432 6.432 13 N -0.315 5.315 14 C -0.047 4.047 15 C 0.127 3.873 16 H 0.076 0.924 17 C -0.208 4.208 18 C -0.647 4.647 19 H 0.077 0.923 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.896 3.104 23 H -0.213 1.213 24 H -0.206 1.206 25 H -0.212 1.212 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.468 10.001 -0.664 10.322 hybrid contribution 0.020 1.180 0.973 1.530 sum -2.448 11.181 0.309 11.450 Atomic orbital electron populations 1.20651 0.90793 1.02401 1.02448 1.19099 0.96339 0.89554 1.05410 1.20708 0.94185 0.96331 0.99798 1.20929 0.94072 0.97500 1.04368 1.20252 0.99685 0.90514 0.98954 1.20831 0.93849 0.95490 1.06672 1.19410 0.91724 0.85722 0.95839 1.86885 1.38637 1.13200 1.80108 1.23327 0.86177 0.95484 0.94028 0.83771 1.20623 0.81629 0.79983 0.89554 1.90634 1.38509 1.48286 1.65777 1.48197 1.30649 1.42970 1.09692 1.21426 1.01391 1.00870 0.81021 1.19368 0.82681 0.93916 0.91299 0.92387 1.22227 0.99713 0.97643 1.01221 1.22116 1.41195 0.90342 1.11063 0.92313 1.25842 0.93248 1.06945 0.91646 1.70877 1.41313 1.13595 1.27943 0.83531 0.76658 0.74021 0.76221 1.21295 1.20566 1.21198 1.21896 0.97498 0.89976 1.04393 0.91244 0.91863 0.91389 0.85493 0.85720 0.85915 0.94119 0.92277 0.90258 0.93465 0.91929 0.95793 0.92037 0.88133 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.98 36.01 0.36 -1.05 16 2 C -0.10 -1.61 5.90 -104.35 -0.62 -2.23 16 3 C -0.09 -1.20 9.66 -39.68 -0.38 -1.58 16 4 C -0.15 -1.90 10.07 -39.52 -0.40 -2.30 16 5 C -0.08 -1.08 10.03 -39.72 -0.40 -1.48 16 6 C -0.17 -2.84 6.26 -104.10 -0.65 -3.49 16 7 C 0.12 2.15 6.54 -38.96 -0.25 1.90 16 8 O -0.28 -5.49 10.29 -39.22 -0.40 -5.89 16 9 C 0.07 1.36 3.11 -26.98 -0.08 1.27 16 10 H 0.14 2.82 7.75 -51.93 -0.40 2.42 16 11 C 0.50 10.84 6.96 -10.99 -0.08 10.77 16 12 O -0.55 -13.39 16.19 -13.50 -0.22 -13.61 16 13 N -0.58 -12.39 2.75 -175.26 -0.48 -12.87 16 14 C 0.10 1.84 9.22 59.85 0.55 2.39 16 15 C 0.23 5.00 1.41 -69.08 -0.10 4.90 16 16 H 0.06 1.28 3.22 -51.93 -0.17 1.12 16 17 C -0.15 -3.00 9.09 37.16 0.34 -2.66 16 18 C -0.61 -15.02 8.11 -34.44 -0.28 -15.30 16 19 H 0.06 1.47 6.74 -52.49 -0.35 1.12 16 20 C 0.03 0.73 5.46 -17.82 -0.10 0.63 16 21 N -0.90 -23.88 13.62 55.43 0.76 -23.12 16 22 Si 1.07 22.97 29.91 -169.99 -5.08 17.88 16 23 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.10 -1.73 5.33 -26.52 -0.14 -1.87 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 35 H 0.08 1.48 6.71 -51.93 -0.35 1.13 16 36 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.43 7.21 -51.93 -0.37 0.05 16 39 H 0.27 6.88 6.67 -40.82 -0.27 6.61 16 40 H 0.10 1.76 5.54 -51.93 -0.29 1.47 16 41 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -29.81 333.04 -8.23 -38.04 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.58 Total: 4.66 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.23 Total: -10.10 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.27 Total: -35.99 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.62 Total: -19.50 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.08 Total: 17.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.81 -8.23 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336220261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.317 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds