Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 120.01133 * 2 1 4 4 C 1.38243 * 119.76935 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.35184 * 359.79272 * 4 3 2 6 6 C 1.39247 * 120.23323 * 0.02909 * 5 4 3 7 7 C 1.37693 * 120.01385 * 179.72047 * 2 1 3 8 8 C 1.51660 * 132.16525 * 1.54975 * 7 2 1 9 9 C 1.54696 * 101.98737 * 163.79772 * 8 7 2 10 10 H 1.09008 * 110.74820 * 266.73416 * 9 8 7 11 11 C 1.50705 * 110.74716 * 143.38932 * 9 8 7 12 12 O 1.21277 * 119.99680 * 250.17403 * 11 9 8 13 13 N 1.34775 * 119.99933 * 70.17531 * 11 9 8 14 14 C 1.46498 * 120.00347 * 359.97438 * 13 11 9 15 15 C 1.46501 * 119.99719 * 180.02562 * 13 11 9 16 16 H 1.09000 * 109.47147 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.46747 * 239.99639 * 15 13 11 18 18 C 1.50696 * 109.47277 * 119.99635 * 15 13 11 19 19 H 1.07998 * 119.99858 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99773 * 179.97438 * 18 15 13 21 21 N 1.31511 * 120.00440 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99891 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47772 * 89.99871 * 22 20 18 24 24 H 1.48504 * 109.47321 * 210.00080 * 22 20 18 25 25 H 1.48505 * 109.46920 * 329.99717 * 22 20 18 26 26 O 1.36141 * 129.89680 * 180.67160 * 6 5 4 27 27 H 1.09002 * 109.47152 * 90.00262 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00363 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00344 * 1 2 3 30 30 H 1.08003 * 120.11734 * 359.95414 * 3 2 1 31 31 H 1.08004 * 119.82369 * 179.77021 * 4 3 2 32 32 H 1.07993 * 119.88320 * 180.02562 * 5 4 3 33 33 H 1.09003 * 111.08017 * 45.54381 * 8 7 2 34 34 H 1.08996 * 110.74399 * 281.90572 * 8 7 2 35 35 H 1.08999 * 109.46890 * 90.00182 * 14 13 11 36 36 H 1.08999 * 109.47308 * 210.00059 * 14 13 11 37 37 H 1.08998 * 109.47297 * 330.00710 * 14 13 11 38 38 H 1.08994 * 109.47538 * 300.00058 * 17 15 13 39 39 H 1.09008 * 109.47337 * 60.00068 * 17 15 13 40 40 H 1.08997 * 109.47136 * 179.97438 * 17 15 13 41 41 H 0.96994 * 120.00803 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2738 -0.0010 0.0054 6 6 3.5848 -1.2111 0.0092 7 6 2.1958 -1.1923 0.0058 8 6 1.7320 -2.6360 -0.0175 9 6 3.0267 -3.3830 -0.4160 10 1 3.0740 -3.5247 -1.4958 11 6 3.1232 -4.7045 0.3020 12 8 3.9539 -4.8631 1.1712 13 7 2.2862 -5.7101 -0.0220 14 6 1.2824 -5.5183 -1.0716 15 6 2.3797 -6.9945 0.6764 16 1 3.1778 -6.9480 1.4173 17 6 2.6854 -8.1028 -0.3331 18 6 1.0716 -7.2885 1.3644 19 1 0.2524 -6.5888 1.2886 20 6 0.9203 -8.4513 2.0897 21 7 1.9173 -9.3041 2.1807 22 14 -0.7014 -8.8162 2.9419 23 1 -1.5872 -9.5702 2.0189 24 1 -0.4492 -9.6282 4.1594 25 1 -1.3573 -7.5401 3.3252 26 8 4.0603 -2.4866 0.0264 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6613 2.1349 -0.0007 31 1 4.1227 2.1272 -0.0032 32 1 5.3537 0.0032 0.0062 33 1 0.9511 -2.7850 -0.7633 34 1 1.3904 -2.9478 0.9694 35 1 1.7052 -5.8034 -2.0350 36 1 0.4116 -6.1385 -0.8592 37 1 0.9837 -4.4705 -1.1017 38 1 1.8876 -8.1494 -1.0743 39 1 3.6316 -7.8901 -0.8308 40 1 2.7554 -9.0584 0.1865 41 1 1.8108 -10.1223 2.6906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336249825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -36.539100 kcal Electronic energy + Delta-G solvation = -23179.771501 eV Core-core repulsion = 19832.342564 eV Total energy + Delta-G solvation = -3347.428936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34856 -38.98205 -37.46381 -35.36780 -33.59289 -32.85249 -31.28235 -30.17748 -28.81441 -26.82578 -26.28629 -25.27477 -24.18553 -22.19303 -21.08947 -20.93711 -18.65213 -17.46693 -16.80890 -16.65934 -16.08420 -16.02105 -15.40151 -14.61001 -14.49969 -14.08098 -13.80450 -13.66482 -13.51011 -13.08139 -12.94480 -12.64902 -12.61369 -12.38796 -12.25840 -11.80652 -11.66490 -11.59484 -11.38525 -11.10053 -11.01148 -10.88527 -10.79765 -10.71257 -10.30318 -10.21089 -9.24604 -9.01818 -8.75072 -8.47065 -8.12925 -7.69398 -6.11197 -4.19803 1.21016 1.31238 2.94550 3.18407 3.23737 3.31589 3.34539 3.59119 3.97329 4.34183 4.40680 4.53362 4.73864 4.86599 4.95620 5.08202 5.11671 5.20332 5.23782 5.32156 5.45146 5.48290 5.55960 5.67478 5.77667 5.82295 5.93437 6.05011 6.26935 6.28469 6.34089 6.46204 6.55747 6.71452 6.78919 7.00830 7.17106 7.35156 7.46805 7.66065 7.96359 8.13510 8.40625 8.75844 8.92961 9.46623 10.94232 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.004124 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.375132 B = 6787.793680 C = 7397.755961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C -0.156 4.156 4 C -0.083 4.083 5 C -0.146 4.146 6 C 0.115 3.885 7 C -0.173 4.173 8 C -0.096 4.096 9 C 0.065 3.935 10 H 0.106 0.894 11 C 0.508 3.492 12 O -0.528 6.528 13 N -0.585 5.585 14 C 0.072 3.928 15 C 0.259 3.741 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.528 4.528 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 O -0.274 6.274 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.030 0.970 39 H 0.012 0.988 40 H 0.094 0.906 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 17.566 -8.637 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.035 4.035 3 C -0.174 4.174 4 C -0.101 4.101 5 C -0.165 4.165 6 C 0.069 3.931 7 C -0.174 4.174 8 C -0.133 4.133 9 C 0.005 3.995 10 H 0.123 0.877 11 C 0.293 3.707 12 O -0.405 6.405 13 N -0.318 5.318 14 C -0.072 4.072 15 C 0.159 3.841 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.567 4.567 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 O -0.186 6.186 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.113 0.887 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.052 17.157 -8.014 19.047 hybrid contribution -1.011 -0.330 0.340 1.116 sum -3.062 16.826 -7.674 18.745 Atomic orbital electron populations 1.20816 0.90977 1.03087 1.02469 1.19100 0.95948 0.91065 0.97436 1.20879 0.94115 0.97044 1.05364 1.20809 0.94145 0.96897 0.98204 1.20228 1.00272 0.88846 1.07128 1.19678 0.92004 0.86015 0.95399 1.20612 0.93674 0.94916 1.08212 1.21778 0.97134 0.89990 1.04430 1.23311 0.86282 0.90362 0.99503 0.87674 1.19787 0.82590 0.84390 0.83969 1.90702 1.36308 1.81735 1.31705 1.48163 1.32291 1.14302 1.37050 1.21837 0.93699 1.01230 0.90415 1.19002 0.98563 0.75986 0.90514 0.91807 1.22089 0.96549 1.03311 0.98538 1.21287 0.98288 1.05208 1.31874 0.92148 1.24890 0.96890 0.95907 0.96027 1.69871 1.30876 1.10819 1.40850 0.86483 0.83362 0.78339 0.79137 1.20574 1.21062 1.19920 1.86968 1.37230 1.12775 1.81667 0.90914 0.91349 0.91235 0.85666 0.85276 0.85447 0.88097 0.88331 0.93547 0.89568 0.92506 0.95052 0.96927 0.88705 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.91 36.01 0.36 -0.68 16 2 C -0.04 -0.41 5.87 -104.76 -0.61 -1.02 16 3 C -0.16 -1.60 9.72 -39.52 -0.38 -1.98 16 4 C -0.08 -0.86 10.02 -39.68 -0.40 -1.25 16 5 C -0.15 -1.87 10.06 -39.30 -0.40 -2.26 16 6 C 0.12 1.78 7.03 -38.96 -0.27 1.50 16 7 C -0.17 -2.41 6.07 -104.10 -0.63 -3.04 16 8 C -0.10 -1.35 5.12 -26.52 -0.14 -1.48 16 9 C 0.07 1.08 3.10 -26.99 -0.08 1.00 16 10 H 0.11 1.45 7.95 -51.92 -0.41 1.03 16 11 C 0.51 10.86 7.01 -10.98 -0.08 10.79 16 12 O -0.53 -13.83 15.90 -13.49 -0.21 -14.05 16 13 N -0.59 -12.27 2.75 -175.27 -0.48 -12.75 16 14 C 0.07 1.13 9.10 59.85 0.54 1.68 16 15 C 0.26 6.55 2.64 -69.08 -0.18 6.37 16 16 H 0.06 1.89 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 18 C -0.53 -13.97 7.99 -34.44 -0.28 -14.24 16 19 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 22 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 O -0.27 -5.03 10.39 -39.23 -0.41 -5.44 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.10 1.10 6.57 -51.93 -0.34 0.76 16 34 H 0.10 1.54 7.92 -51.93 -0.41 1.13 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.44 7.02 -51.93 -0.36 1.07 16 37 H 0.06 0.71 4.40 -51.93 -0.23 0.48 16 38 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -32.39 333.72 -8.49 -40.88 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.71 Total: 0.95 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.31 Total: -6.08 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.14 Total: -36.98 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.62 Total: -19.48 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.39 -8.49 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336249825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.337 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds