Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 120.01133 * 2 1 4 4 C 1.38243 * 119.76935 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.35184 * 359.79272 * 4 3 2 6 6 C 1.39247 * 120.23323 * 0.02909 * 5 4 3 7 7 C 1.37693 * 120.01385 * 179.72047 * 2 1 3 8 8 C 1.51660 * 132.16525 * 1.54975 * 7 2 1 9 9 C 1.54696 * 101.98737 * 163.79772 * 8 7 2 10 10 H 1.09008 * 110.74820 * 266.73416 * 9 8 7 11 11 C 1.50705 * 110.74716 * 143.38932 * 9 8 7 12 12 O 1.21277 * 119.99680 * 250.17403 * 11 9 8 13 13 N 1.34775 * 119.99933 * 70.17531 * 11 9 8 14 14 C 1.46498 * 120.00347 * 359.97438 * 13 11 9 15 15 C 1.46501 * 119.99719 * 180.02562 * 13 11 9 16 16 H 1.09000 * 109.47147 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.46747 * 239.99639 * 15 13 11 18 18 C 1.50696 * 109.47277 * 119.99635 * 15 13 11 19 19 H 1.07998 * 119.99858 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99773 * 179.97438 * 18 15 13 21 21 N 1.31511 * 120.00440 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99891 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47772 * 89.99871 * 22 20 18 24 24 H 1.48504 * 109.47321 * 210.00080 * 22 20 18 25 25 H 1.48505 * 109.46920 * 329.99717 * 22 20 18 26 26 O 1.36141 * 129.89680 * 180.67160 * 6 5 4 27 27 H 1.09002 * 109.47152 * 90.00262 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00363 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00344 * 1 2 3 30 30 H 1.08003 * 120.11734 * 359.95414 * 3 2 1 31 31 H 1.08004 * 119.82369 * 179.77021 * 4 3 2 32 32 H 1.07993 * 119.88320 * 180.02562 * 5 4 3 33 33 H 1.09003 * 111.08017 * 45.54381 * 8 7 2 34 34 H 1.08996 * 110.74399 * 281.90572 * 8 7 2 35 35 H 1.08999 * 109.46890 * 90.00182 * 14 13 11 36 36 H 1.08999 * 109.47308 * 210.00059 * 14 13 11 37 37 H 1.08998 * 109.47297 * 330.00710 * 14 13 11 38 38 H 1.08994 * 109.47538 * 300.00058 * 17 15 13 39 39 H 1.09008 * 109.47337 * 60.00068 * 17 15 13 40 40 H 1.08997 * 109.47136 * 179.97438 * 17 15 13 41 41 H 0.96994 * 120.00803 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2738 -0.0010 0.0054 6 6 3.5848 -1.2111 0.0092 7 6 2.1958 -1.1923 0.0058 8 6 1.7320 -2.6360 -0.0175 9 6 3.0267 -3.3830 -0.4160 10 1 3.0740 -3.5247 -1.4958 11 6 3.1232 -4.7045 0.3020 12 8 3.9539 -4.8631 1.1712 13 7 2.2862 -5.7101 -0.0220 14 6 1.2824 -5.5183 -1.0716 15 6 2.3797 -6.9945 0.6764 16 1 3.1778 -6.9480 1.4173 17 6 2.6854 -8.1028 -0.3331 18 6 1.0716 -7.2885 1.3644 19 1 0.2524 -6.5888 1.2886 20 6 0.9203 -8.4513 2.0897 21 7 1.9173 -9.3041 2.1807 22 14 -0.7014 -8.8162 2.9419 23 1 -1.5872 -9.5702 2.0189 24 1 -0.4492 -9.6282 4.1594 25 1 -1.3573 -7.5401 3.3252 26 8 4.0603 -2.4866 0.0264 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6613 2.1349 -0.0007 31 1 4.1227 2.1272 -0.0032 32 1 5.3537 0.0032 0.0062 33 1 0.9511 -2.7850 -0.7633 34 1 1.3904 -2.9478 0.9694 35 1 1.7052 -5.8034 -2.0350 36 1 0.4116 -6.1385 -0.8592 37 1 0.9837 -4.4705 -1.1017 38 1 1.8876 -8.1494 -1.0743 39 1 3.6316 -7.8901 -0.8308 40 1 2.7554 -9.0584 0.1865 41 1 1.8108 -10.1223 2.6906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336249825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = -55.597467 kcal Electronic energy + Delta-G solvation = -23180.597933 eV Core-core repulsion = 19832.342564 eV Total energy + Delta-G solvation = -3348.255369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.50892 -40.52183 -38.55687 -37.18940 -35.07814 -34.24259 -32.46058 -31.60129 -30.22112 -27.78154 -27.61672 -27.32250 -25.45094 -23.27536 -22.71437 -21.88028 -20.29268 -18.83409 -18.47862 -17.75596 -17.68008 -17.35744 -16.86805 -16.27335 -15.95712 -15.38468 -14.79988 -14.72310 -14.66808 -14.38331 -14.29443 -14.02925 -13.89057 -13.64207 -13.45344 -13.21492 -13.03719 -12.92130 -12.75570 -12.71319 -12.57797 -12.37375 -12.23040 -12.14360 -12.02607 -11.71855 -11.22399 -10.75350 -10.51816 -9.63568 -9.43786 -9.14196 -8.16136 -6.33146 0.31126 0.38232 1.41091 1.43421 1.49886 1.53054 1.72442 2.39703 2.55051 2.75765 3.12441 3.23669 3.36364 3.68498 3.83533 3.89640 4.11518 4.19482 4.32782 4.45891 4.51648 4.60714 4.66557 4.71533 4.73220 4.83886 4.87945 4.88242 4.94203 5.01478 5.04079 5.29218 5.37941 5.44023 5.46364 5.51510 5.60256 5.62900 5.70660 5.99356 6.12438 6.19155 6.66355 6.74088 7.19148 7.39940 8.88807 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.004124 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.375132 B = 6787.793680 C = 7397.755961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 C -0.149 4.149 4 C -0.076 4.076 5 C -0.159 4.159 6 C 0.073 3.927 7 C -0.186 4.186 8 C -0.087 4.087 9 C 0.073 3.927 10 H 0.139 0.861 11 C 0.498 3.502 12 O -0.593 6.593 13 N -0.587 5.587 14 C 0.065 3.935 15 C 0.261 3.739 16 H 0.005 0.995 17 C -0.132 4.132 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.269 1.269 26 O -0.312 6.312 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.018 0.982 40 H 0.069 0.931 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 20.357 -10.314 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.040 4.040 3 C -0.166 4.166 4 C -0.094 4.094 5 C -0.178 4.178 6 C 0.028 3.972 7 C -0.187 4.187 8 C -0.124 4.124 9 C 0.014 3.986 10 H 0.156 0.844 11 C 0.285 3.715 12 O -0.475 6.475 13 N -0.318 5.318 14 C -0.076 4.076 15 C 0.159 3.841 16 H 0.023 0.977 17 C -0.190 4.190 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.557 5.557 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.194 1.194 26 O -0.226 6.226 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.846 19.972 -9.741 22.743 hybrid contribution -0.102 -1.077 0.867 1.386 sum -4.949 18.895 -8.873 21.454 Atomic orbital electron populations 1.20885 0.88889 1.03696 1.03779 1.19512 0.97553 0.90551 0.96353 1.21364 0.94195 0.97950 1.03130 1.21245 0.94660 0.97127 0.96377 1.20556 1.00892 0.89004 1.07330 1.20084 0.93342 0.85466 0.98269 1.20693 0.93086 0.95420 1.09466 1.21724 0.96494 0.90043 1.04143 1.23267 0.87616 0.87618 1.00079 0.84394 1.20717 0.81384 0.86048 0.83324 1.90656 1.38961 1.83119 1.34716 1.48125 1.33272 1.12840 1.37557 1.22162 0.92174 1.03640 0.89643 1.18615 0.96407 0.78654 0.90378 0.97713 1.21875 0.97626 1.01330 0.98214 1.21558 0.98608 1.05365 1.32146 0.91511 1.25766 1.00311 0.95780 0.96670 1.70027 1.32927 1.11231 1.41564 0.85418 0.79243 0.78205 0.77923 1.18981 1.21431 1.19376 1.86901 1.38422 1.14497 1.82776 0.89111 0.89524 0.91922 0.82201 0.81865 0.85089 0.84491 0.90707 0.90943 0.90185 0.88870 0.92888 0.96269 0.91280 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.91 71.24 0.71 -0.90 16 2 C -0.04 -0.79 5.87 -19.96 -0.12 -0.91 16 3 C -0.15 -2.44 9.72 22.31 0.22 -2.23 16 4 C -0.08 -1.35 10.02 22.21 0.22 -1.13 16 5 C -0.16 -3.93 10.06 22.45 0.23 -3.71 16 6 C 0.07 2.26 7.03 22.67 0.16 2.42 16 7 C -0.19 -4.90 6.07 -19.52 -0.12 -5.02 16 8 C -0.09 -2.34 5.12 30.73 0.16 -2.18 16 9 C 0.07 2.44 3.10 30.43 0.09 2.53 16 10 H 0.14 3.57 7.95 -2.38 -0.02 3.55 16 11 C 0.50 22.17 7.01 87.66 0.61 22.78 16 12 O -0.59 -33.49 15.90 15.19 0.24 -33.25 16 13 N -0.59 -24.97 2.75 -826.81 -2.28 -27.24 16 14 C 0.07 1.93 9.10 127.77 1.16 3.09 16 15 C 0.26 13.75 2.64 44.24 0.12 13.87 16 16 H 0.00 0.31 6.90 -2.39 -0.02 0.30 16 17 C -0.13 -6.38 8.97 71.98 0.65 -5.74 16 18 C -0.54 -28.99 7.99 25.60 0.20 -28.78 16 19 H 0.07 3.42 7.33 -2.91 -0.02 3.40 16 20 C 0.01 0.78 5.30 84.66 0.45 1.23 16 21 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 22 Si 0.97 42.61 29.54 68.60 2.03 44.64 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 O -0.31 -11.90 10.39 -76.94 -0.80 -12.70 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 29 H 0.06 0.97 7.79 -2.38 -0.02 0.95 16 30 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.14 2.53 6.57 -2.39 -0.02 2.52 16 34 H 0.07 2.36 7.92 -2.39 -0.02 2.34 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.50 7.02 -2.39 -0.02 2.48 16 37 H 0.09 2.04 4.40 -2.39 -0.01 2.03 16 38 H 0.05 2.27 7.67 -2.39 -0.02 2.26 16 39 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -76.77 333.72 5.21 -71.57 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.03 Total: 14.63 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 4.74 Total: -4.68 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.03 Total: -80.21 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.56 Total: -45.95 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -76.77 5.21 -71.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336249825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.971 kcal (2) G-P(sol) polarization free energy of solvation -76.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds