Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 120.01133 * 2 1 4 4 C 1.38243 * 119.76935 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.35184 * 359.79272 * 4 3 2 6 6 C 1.39247 * 120.23323 * 0.02909 * 5 4 3 7 7 C 1.37693 * 120.01385 * 179.72047 * 2 1 3 8 8 C 1.51660 * 132.16525 * 1.54975 * 7 2 1 9 9 C 1.54696 * 101.98737 * 163.79772 * 8 7 2 10 10 H 1.09008 * 110.74820 * 266.73416 * 9 8 7 11 11 C 1.50704 * 110.90391 * 143.46221 * 9 8 7 12 12 O 1.21279 * 119.99437 * 250.08240 * 11 9 8 13 13 N 1.34777 * 119.99901 * 70.08317 * 11 9 8 14 14 C 1.46493 * 120.00373 * 0.02562 * 13 11 9 15 15 C 1.46505 * 119.99418 * 180.02562 * 13 11 9 16 16 H 1.08992 * 109.47202 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.46876 * 120.00156 * 15 13 11 18 18 C 1.50700 * 109.46673 * 239.99759 * 15 13 11 19 19 H 1.07994 * 120.00497 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99725 * 180.02562 * 18 15 13 21 21 N 1.31520 * 119.99817 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99994 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47225 * 89.99996 * 22 20 18 24 24 H 1.48499 * 109.47050 * 209.99791 * 22 20 18 25 25 H 1.48492 * 109.47050 * 330.00056 * 22 20 18 26 26 O 1.36141 * 129.89680 * 180.67160 * 6 5 4 27 27 H 1.09002 * 109.47152 * 90.00262 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00363 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00344 * 1 2 3 30 30 H 1.08003 * 120.11734 * 359.95414 * 3 2 1 31 31 H 1.08004 * 119.82369 * 179.77021 * 4 3 2 32 32 H 1.07993 * 119.88320 * 180.02562 * 5 4 3 33 33 H 1.09003 * 111.08017 * 45.54381 * 8 7 2 34 34 H 1.08996 * 110.74399 * 281.90572 * 8 7 2 35 35 H 1.08996 * 109.47279 * 89.99459 * 14 13 11 36 36 H 1.08998 * 109.47387 * 210.00326 * 14 13 11 37 37 H 1.09000 * 109.47180 * 329.99984 * 14 13 11 38 38 H 1.09001 * 109.47049 * 59.99981 * 17 15 13 39 39 H 1.09001 * 109.46725 * 179.97438 * 17 15 13 40 40 H 1.09002 * 109.46989 * 299.99851 * 17 15 13 41 41 H 0.97002 * 119.99364 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2738 -0.0010 0.0054 6 6 3.5848 -1.2111 0.0092 7 6 2.1958 -1.1923 0.0058 8 6 1.7320 -2.6360 -0.0175 9 6 3.0267 -3.3830 -0.4160 10 1 3.0740 -3.5247 -1.4958 11 6 3.1259 -4.7061 0.2987 12 8 3.9585 -4.8658 1.1659 13 7 2.2893 -5.7117 -0.0258 14 6 1.2839 -5.5189 -1.0737 15 6 2.3854 -6.9976 0.6695 16 1 3.1843 -6.9517 1.4094 17 6 1.0589 -7.2990 1.3699 18 6 2.6856 -8.0866 -0.3280 19 1 2.7944 -7.8451 -1.3749 20 6 2.8214 -9.3916 0.0961 21 7 2.6884 -9.6858 1.3711 22 14 3.1943 -10.7415 -1.1401 23 1 4.6650 -10.8945 -1.2774 24 1 2.6053 -12.0206 -0.6689 25 1 2.6090 -10.3823 -2.4567 26 8 4.0603 -2.4866 0.0264 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6613 2.1349 -0.0007 31 1 4.1227 2.1272 -0.0032 32 1 5.3537 0.0032 0.0062 33 1 0.9511 -2.7850 -0.7633 34 1 1.3904 -2.9478 0.9694 35 1 1.7055 -5.8018 -2.0382 36 1 0.4138 -6.1400 -0.8612 37 1 0.9843 -4.4712 -1.1015 38 1 0.2596 -7.3448 0.6301 39 1 1.1303 -8.2560 1.8868 40 1 0.8417 -6.5113 2.0912 41 1 2.7844 -10.6038 1.6694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336249828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = -35.694993 kcal Electronic energy + Delta-G solvation = -23119.473295 eV Core-core repulsion = 19772.080961 eV Total energy + Delta-G solvation = -3347.392333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36734 -38.99193 -37.48069 -35.37617 -33.61501 -32.85563 -31.30145 -30.18949 -28.82989 -26.85118 -26.32450 -25.25270 -24.20433 -22.21685 -21.10998 -20.95634 -18.62157 -17.48659 -16.76589 -16.69086 -16.24768 -15.94418 -15.40364 -14.60350 -14.46350 -14.11257 -13.83180 -13.71440 -13.52262 -13.10788 -12.98521 -12.72645 -12.64549 -12.42934 -12.31337 -11.76628 -11.66517 -11.59029 -11.39672 -11.10147 -11.01445 -10.86277 -10.80985 -10.75419 -10.27735 -10.20077 -9.23753 -9.03114 -8.77893 -8.45920 -8.14852 -7.69260 -6.10364 -4.18689 1.18445 1.29176 2.91349 3.22636 3.26064 3.32657 3.34258 3.56448 3.94602 4.33257 4.39834 4.50825 4.71480 4.83982 4.93316 5.07089 5.09885 5.20784 5.21624 5.30278 5.41450 5.46041 5.52844 5.63230 5.73121 5.76583 5.96582 6.01789 6.21494 6.25501 6.32041 6.43416 6.53888 6.71165 6.76139 6.99027 7.15831 7.35528 7.44902 7.66828 7.96639 8.13499 8.40945 8.76726 8.93190 9.47830 10.95039 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.003692 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.508928 B = 7582.609497 C = 7906.965581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.156 4.156 4 C -0.082 4.082 5 C -0.146 4.146 6 C 0.116 3.884 7 C -0.175 4.175 8 C -0.095 4.095 9 C 0.065 3.935 10 H 0.107 0.893 11 C 0.509 3.491 12 O -0.528 6.528 13 N -0.586 5.586 14 C 0.075 3.925 15 C 0.259 3.741 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.527 4.527 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 O -0.273 6.273 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.031 0.969 39 H 0.095 0.905 40 H 0.012 0.988 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 19.185 -5.321 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 C -0.174 4.174 4 C -0.100 4.100 5 C -0.165 4.165 6 C 0.070 3.930 7 C -0.176 4.176 8 C -0.132 4.132 9 C 0.005 3.995 10 H 0.124 0.876 11 C 0.293 3.707 12 O -0.404 6.404 13 N -0.318 5.318 14 C -0.068 4.068 15 C 0.159 3.841 16 H 0.082 0.918 17 C -0.206 4.206 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 O -0.186 6.186 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.114 0.886 40 H 0.031 0.969 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.249 18.794 -4.657 20.062 hybrid contribution 0.093 -0.868 -0.801 1.185 sum -5.156 17.927 -5.459 19.436 Atomic orbital electron populations 1.20810 0.90992 1.03007 1.02483 1.19094 0.95923 0.91068 0.97490 1.20878 0.94116 0.97040 1.05398 1.20816 0.94149 0.96912 0.98110 1.20241 1.00327 0.88850 1.07050 1.19687 0.91994 0.86056 0.95277 1.20599 0.93684 0.94871 1.08430 1.21765 0.97223 0.90106 1.04148 1.23322 0.86143 0.90293 0.99734 0.87560 1.19772 0.82555 0.84380 0.84015 1.90704 1.35699 1.81921 1.32120 1.48160 1.32614 1.13919 1.37143 1.21791 0.93170 1.00416 0.91467 1.19005 0.95600 0.76976 0.92487 0.91788 1.22105 0.97572 1.02235 0.98650 1.21298 1.49391 0.91728 0.94151 0.92189 1.24898 0.94898 0.98566 0.95405 1.69880 1.49193 1.19563 1.13902 0.86469 0.78629 0.81008 0.81134 1.20569 1.21101 1.19901 1.86982 1.37244 1.12737 1.81600 0.90900 0.91346 0.91321 0.85659 0.85257 0.85410 0.88080 0.88609 0.92947 0.90334 0.92658 0.94979 0.88634 0.96903 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.91 36.01 0.36 -0.60 16 2 C -0.04 -0.39 5.87 -104.76 -0.61 -1.01 16 3 C -0.16 -1.55 9.72 -39.52 -0.38 -1.93 16 4 C -0.08 -0.83 10.02 -39.68 -0.40 -1.23 16 5 C -0.15 -1.85 10.06 -39.30 -0.40 -2.24 16 6 C 0.12 1.77 7.03 -38.96 -0.27 1.49 16 7 C -0.17 -2.35 6.07 -104.10 -0.63 -2.98 16 8 C -0.10 -1.27 5.12 -26.52 -0.14 -1.41 16 9 C 0.06 1.08 3.09 -26.99 -0.08 0.99 16 10 H 0.11 1.51 7.95 -51.92 -0.41 1.10 16 11 C 0.51 10.86 7.02 -10.98 -0.08 10.79 16 12 O -0.53 -13.82 15.90 -13.49 -0.21 -14.04 16 13 N -0.59 -12.28 2.75 -175.27 -0.48 -12.76 16 14 C 0.08 1.19 9.34 59.84 0.56 1.75 16 15 C 0.26 6.56 2.64 -69.08 -0.18 6.38 16 16 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 18 C -0.53 -14.12 8.37 -34.44 -0.29 -14.41 16 19 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 O -0.27 -5.02 10.39 -39.23 -0.41 -5.42 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.10 1.04 6.57 -51.93 -0.34 0.70 16 34 H 0.10 1.37 7.92 -51.93 -0.41 0.96 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 37 H 0.05 0.67 4.40 -51.93 -0.23 0.44 16 38 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 39 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -32.65 333.06 -8.43 -41.08 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.64 Total: 0.43 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.31 Total: -5.86 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.14 Total: -37.10 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.62 Total: -19.46 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.65 -8.43 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336249828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.385 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds