Wall clock time and date at job start Tue Mar 31 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 120.01133 * 2 1 4 4 C 1.38243 * 119.76935 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.35184 * 359.79272 * 4 3 2 6 6 C 1.39247 * 120.23323 * 0.02909 * 5 4 3 7 7 C 1.37693 * 120.01385 * 179.72047 * 2 1 3 8 8 C 1.51660 * 132.16525 * 1.54975 * 7 2 1 9 9 C 1.54696 * 101.98737 * 163.79772 * 8 7 2 10 10 H 1.09008 * 110.74820 * 266.73416 * 9 8 7 11 11 C 1.50704 * 110.90391 * 143.46221 * 9 8 7 12 12 O 1.21279 * 119.99437 * 250.08240 * 11 9 8 13 13 N 1.34777 * 119.99901 * 70.08317 * 11 9 8 14 14 C 1.46493 * 120.00373 * 0.02562 * 13 11 9 15 15 C 1.46505 * 119.99418 * 180.02562 * 13 11 9 16 16 H 1.08992 * 109.47202 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.46876 * 120.00156 * 15 13 11 18 18 C 1.50700 * 109.46673 * 239.99759 * 15 13 11 19 19 H 1.07994 * 120.00497 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99725 * 180.02562 * 18 15 13 21 21 N 1.31520 * 119.99817 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99994 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47225 * 89.99996 * 22 20 18 24 24 H 1.48499 * 109.47050 * 209.99791 * 22 20 18 25 25 H 1.48492 * 109.47050 * 330.00056 * 22 20 18 26 26 O 1.36141 * 129.89680 * 180.67160 * 6 5 4 27 27 H 1.09002 * 109.47152 * 90.00262 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00363 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00344 * 1 2 3 30 30 H 1.08003 * 120.11734 * 359.95414 * 3 2 1 31 31 H 1.08004 * 119.82369 * 179.77021 * 4 3 2 32 32 H 1.07993 * 119.88320 * 180.02562 * 5 4 3 33 33 H 1.09003 * 111.08017 * 45.54381 * 8 7 2 34 34 H 1.08996 * 110.74399 * 281.90572 * 8 7 2 35 35 H 1.08996 * 109.47279 * 89.99459 * 14 13 11 36 36 H 1.08998 * 109.47387 * 210.00326 * 14 13 11 37 37 H 1.09000 * 109.47180 * 329.99984 * 14 13 11 38 38 H 1.09001 * 109.47049 * 59.99981 * 17 15 13 39 39 H 1.09001 * 109.46725 * 179.97438 * 17 15 13 40 40 H 1.09002 * 109.46989 * 299.99851 * 17 15 13 41 41 H 0.97002 * 119.99364 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2738 -0.0010 0.0054 6 6 3.5848 -1.2111 0.0092 7 6 2.1958 -1.1923 0.0058 8 6 1.7320 -2.6360 -0.0175 9 6 3.0267 -3.3830 -0.4160 10 1 3.0740 -3.5247 -1.4958 11 6 3.1259 -4.7061 0.2987 12 8 3.9585 -4.8658 1.1659 13 7 2.2893 -5.7117 -0.0258 14 6 1.2839 -5.5189 -1.0737 15 6 2.3854 -6.9976 0.6695 16 1 3.1843 -6.9517 1.4094 17 6 1.0589 -7.2990 1.3699 18 6 2.6856 -8.0866 -0.3280 19 1 2.7944 -7.8451 -1.3749 20 6 2.8214 -9.3916 0.0961 21 7 2.6884 -9.6858 1.3711 22 14 3.1943 -10.7415 -1.1401 23 1 4.6650 -10.8945 -1.2774 24 1 2.6053 -12.0206 -0.6689 25 1 2.6090 -10.3823 -2.4567 26 8 4.0603 -2.4866 0.0264 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6613 2.1349 -0.0007 31 1 4.1227 2.1272 -0.0032 32 1 5.3537 0.0032 0.0062 33 1 0.9511 -2.7850 -0.7633 34 1 1.3904 -2.9478 0.9694 35 1 1.7055 -5.8018 -2.0382 36 1 0.4138 -6.1400 -0.8612 37 1 0.9843 -4.4712 -1.1015 38 1 0.2596 -7.3448 0.6301 39 1 1.1303 -8.2560 1.8868 40 1 0.8417 -6.5113 2.0912 41 1 2.7844 -10.6038 1.6694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336249828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:25 Heat of formation + Delta-G solvation = -55.031367 kcal Electronic energy + Delta-G solvation = -23120.311783 eV Core-core repulsion = 19772.080961 eV Total energy + Delta-G solvation = -3348.230821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51007 -40.52536 -38.55728 -37.19698 -35.08454 -34.24053 -32.45212 -31.60570 -30.22190 -27.80482 -27.62938 -27.30249 -25.43886 -23.28881 -22.71455 -21.87348 -20.26439 -18.77814 -18.56037 -17.78987 -17.69105 -17.30881 -16.88880 -16.27270 -15.94561 -15.37204 -14.87731 -14.69596 -14.56761 -14.54016 -14.30173 -14.04771 -13.92339 -13.55261 -13.48970 -13.20193 -12.98549 -12.94916 -12.77857 -12.73223 -12.56351 -12.36024 -12.19592 -12.11553 -12.03209 -11.71741 -11.21928 -10.76200 -10.52725 -9.63241 -9.44214 -9.14139 -8.16824 -6.33804 0.31299 0.38349 1.40124 1.42109 1.47570 1.53513 1.75890 2.37952 2.54535 2.76118 3.11533 3.23622 3.35100 3.68207 3.83864 3.91154 4.11966 4.19713 4.32077 4.45927 4.51864 4.59791 4.60319 4.71700 4.76345 4.85367 4.86621 4.89815 4.94925 5.00570 5.03895 5.30064 5.38188 5.41922 5.46755 5.54098 5.60725 5.62530 5.71535 5.99335 6.11952 6.19472 6.66279 6.73464 7.18765 7.39430 8.87845 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.003692 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.508928 B = 7582.609497 C = 7906.965581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 C -0.149 4.149 4 C -0.077 4.077 5 C -0.161 4.161 6 C 0.072 3.928 7 C -0.185 4.185 8 C -0.085 4.085 9 C 0.072 3.928 10 H 0.133 0.867 11 C 0.499 3.501 12 O -0.593 6.593 13 N -0.587 5.587 14 C 0.069 3.931 15 C 0.261 3.739 16 H 0.005 0.995 17 C -0.132 4.132 18 C -0.540 4.540 19 H 0.063 0.937 20 C 0.015 3.985 21 N -0.918 5.918 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.279 1.279 25 H -0.259 1.259 26 O -0.313 6.313 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 21.575 -7.594 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.166 4.166 4 C -0.094 4.094 5 C -0.179 4.179 6 C 0.027 3.973 7 C -0.186 4.186 8 C -0.122 4.122 9 C 0.013 3.987 10 H 0.150 0.850 11 C 0.286 3.714 12 O -0.474 6.474 13 N -0.318 5.318 14 C -0.072 4.072 15 C 0.159 3.841 16 H 0.023 0.977 17 C -0.191 4.191 18 C -0.578 4.578 19 H 0.081 0.919 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.791 3.209 23 H -0.211 1.211 24 H -0.205 1.205 25 H -0.183 1.183 26 O -0.227 6.227 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.578 21.215 -6.970 23.581 hybrid contribution 0.830 -1.473 -0.056 1.691 sum -6.748 19.742 -7.026 22.015 Atomic orbital electron populations 1.20888 0.88698 1.03833 1.03784 1.19520 0.97644 0.90459 0.96262 1.21369 0.94121 0.98042 1.03110 1.21238 0.94740 0.97053 0.96413 1.20554 1.00847 0.89111 1.07422 1.20096 0.93479 0.85405 0.98286 1.20698 0.92942 0.95526 1.09448 1.21732 0.96212 0.89829 1.04413 1.23261 0.87883 0.87660 0.99931 0.84980 1.20705 0.81303 0.86084 0.83345 1.90657 1.38339 1.83327 1.35104 1.48121 1.33574 1.12396 1.37719 1.22119 0.91775 1.03355 0.89996 1.18620 0.94658 0.79059 0.91734 0.97692 1.21880 0.97199 1.01003 0.98981 1.21567 1.49484 0.92370 0.94417 0.91851 1.25759 0.94642 1.00946 0.97152 1.70029 1.49860 1.20032 1.15722 0.85428 0.77954 0.78115 0.79357 1.21078 1.20466 1.18262 1.86913 1.38542 1.14552 1.82721 0.89197 0.89531 0.91597 0.82179 0.81966 0.85294 0.84344 0.90049 0.92002 0.90003 0.88421 0.92665 0.91290 0.96023 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.91 71.24 0.71 -0.71 16 2 C -0.04 -0.73 5.87 -19.96 -0.12 -0.85 16 3 C -0.15 -2.35 9.72 22.31 0.22 -2.13 16 4 C -0.08 -1.34 10.02 22.21 0.22 -1.11 16 5 C -0.16 -3.97 10.06 22.45 0.23 -3.74 16 6 C 0.07 2.21 7.03 22.67 0.16 2.37 16 7 C -0.19 -4.69 6.07 -19.52 -0.12 -4.81 16 8 C -0.08 -2.14 5.12 30.73 0.16 -1.98 16 9 C 0.07 2.39 3.09 30.43 0.09 2.48 16 10 H 0.13 3.60 7.95 -2.38 -0.02 3.58 16 11 C 0.50 22.18 7.02 87.66 0.62 22.80 16 12 O -0.59 -33.48 15.90 15.18 0.24 -33.24 16 13 N -0.59 -24.99 2.75 -826.82 -2.28 -27.26 16 14 C 0.07 2.04 9.34 127.77 1.19 3.24 16 15 C 0.26 13.74 2.64 44.25 0.12 13.86 16 16 H 0.01 0.33 6.90 -2.39 -0.02 0.31 16 17 C -0.13 -6.31 8.95 71.98 0.64 -5.66 16 18 C -0.54 -29.45 8.37 25.60 0.21 -29.23 16 19 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 20 C 0.01 0.81 5.30 84.65 0.45 1.26 16 21 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 22 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 O -0.31 -12.01 10.39 -76.94 -0.80 -12.81 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.76 8.09 -2.39 -0.02 0.75 16 29 H 0.07 0.86 7.79 -2.38 -0.02 0.84 16 30 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.14 2.31 6.57 -2.39 -0.02 2.29 16 34 H 0.08 2.28 7.92 -2.39 -0.02 2.26 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.39 6.43 -2.39 -0.02 2.37 16 37 H 0.10 2.02 4.40 -2.39 -0.01 2.01 16 38 H 0.05 2.32 6.66 -2.39 -0.02 2.31 16 39 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -77.37 333.06 5.25 -72.12 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.04 Total: 13.30 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 4.78 Total: -4.23 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.03 Total: -80.26 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -0.56 Total: -46.05 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.37 5.25 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336249828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.089 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds