Wall clock time and date at job start Tue Mar 31 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47596 * 2 1 4 4 C 1.50705 * 109.47159 * 239.99609 * 2 1 3 5 5 H 1.07997 * 120.00004 * 240.00611 * 4 2 1 6 6 C 1.37877 * 119.99883 * 60.00391 * 4 2 1 7 7 N 1.31513 * 119.99808 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47124 * 60.00188 * 8 6 4 10 10 H 1.48505 * 109.46956 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47334 * 300.00067 * 8 6 4 12 12 C 1.53005 * 109.46916 * 120.00156 * 2 1 3 13 13 S 1.81400 * 109.46901 * 299.99870 * 12 2 1 14 14 O 1.42096 * 110.54691 * 68.37396 * 13 12 2 15 15 O 1.42108 * 110.54495 * 291.62323 * 13 12 2 16 16 N 1.65602 * 104.44912 * 180.02562 * 13 12 2 17 17 C 1.47018 * 125.65057 * 89.97409 * 16 13 12 18 18 C 1.54325 * 107.40412 * 178.89919 * 17 16 13 19 19 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 20 20 C 1.53000 * 110.89394 * 277.26684 * 19 18 17 21 21 C 1.52998 * 111.06990 * 153.48436 * 19 18 17 22 22 C 1.47426 * 125.64425 * 270.01348 * 16 13 12 23 23 H 1.08999 * 109.47176 * 300.00378 * 1 2 3 24 24 H 1.09001 * 109.46747 * 60.00051 * 1 2 3 25 25 H 1.08996 * 109.47906 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47538 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47006 * 300.00317 * 3 2 1 28 28 H 1.08999 * 109.47167 * 59.99617 * 3 2 1 29 29 H 0.97003 * 120.00480 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47145 * 179.97438 * 12 2 1 31 31 H 1.08997 * 109.47403 * 59.99426 * 12 2 1 32 32 H 1.09002 * 109.88241 * 298.39447 * 17 16 13 33 33 H 1.09000 * 109.88049 * 59.40576 * 17 16 13 34 34 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 35 35 H 1.09002 * 110.72265 * 219.52294 * 18 17 16 36 36 H 1.08996 * 109.47127 * 172.23447 * 20 19 18 37 37 H 1.08997 * 109.46908 * 292.23241 * 20 19 18 38 38 H 1.09001 * 109.46975 * 52.23341 * 20 19 18 39 39 H 1.08993 * 109.47390 * 307.66314 * 21 19 18 40 40 H 1.08998 * 109.47080 * 67.66707 * 21 19 18 41 41 H 1.09003 * 109.47219 * 187.66108 * 21 19 18 42 42 H 1.08999 * 110.36956 * 322.93619 * 22 16 13 43 43 H 1.09001 * 110.36709 * 85.14812 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4100 2.8545 16 7 2.0540 -0.7400 3.9936 17 6 3.3495 -0.5025 4.6467 18 6 3.4902 -1.5371 5.7831 19 6 2.0163 -1.9391 6.0681 20 6 1.3447 -0.9266 6.9980 21 6 1.9341 -3.3519 6.6494 22 6 1.3971 -1.8856 4.6491 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7088 1.1612 -3.4844 30 1 3.1300 -0.7217 1.2491 31 1 1.6765 -1.7489 1.2493 32 1 4.1571 -0.6314 3.9260 33 1 3.3777 0.5064 5.0583 34 1 4.0672 -2.3998 5.4501 35 1 3.9458 -1.0835 6.6634 36 1 0.2808 -1.1516 7.0723 37 1 1.7984 -0.9853 7.9873 38 1 1.4764 0.0783 6.5968 39 1 2.4778 -4.0423 6.0047 40 1 2.3758 -3.3610 7.6459 41 1 0.8901 -3.6589 6.7120 42 1 0.3212 -1.7218 4.7106 43 1 1.6094 -2.8064 4.1059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336261822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:36 Heat of formation + Delta-G solvation = -83.264945 kcal Electronic energy + Delta-G solvation = -22829.457871 eV Core-core repulsion = 19615.446702 eV Total energy + Delta-G solvation = -3214.011170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.20879 -36.52731 -36.25730 -35.26813 -33.34520 -31.65346 -29.63425 -27.47668 -26.70972 -25.88159 -25.70963 -25.21712 -22.26151 -19.44610 -19.30466 -18.44463 -17.27917 -16.03275 -15.95539 -15.36074 -14.91898 -14.80576 -14.32725 -14.28174 -13.70335 -13.22328 -12.97931 -12.88391 -12.71652 -12.52747 -12.49359 -12.13049 -12.01640 -11.67827 -11.49686 -11.39386 -11.08066 -11.04296 -10.94393 -10.83240 -10.76844 -10.67561 -10.61562 -10.38980 -10.26038 -10.09118 -9.64497 -9.55431 -8.87308 -8.56887 -8.39497 -6.02717 -4.14849 0.83968 3.16789 3.27220 3.32643 3.34281 4.22313 4.34107 4.40898 4.43656 4.67620 4.81530 5.11240 5.18468 5.22489 5.22856 5.44191 5.50516 5.54016 5.61685 5.70990 5.72018 5.73795 5.76263 5.84676 5.93702 6.02805 6.05496 6.21462 6.30086 6.39583 6.58544 6.71495 6.80452 6.91530 7.05109 7.32094 7.51084 7.68067 7.98476 8.10047 8.33591 8.83278 9.50373 10.98578 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.004579 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.655053 B = 6113.731342 C = 6385.447933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.608 3.392 14 O -0.960 6.960 15 O -0.960 6.960 16 N -1.020 6.020 17 C 0.120 3.880 18 C -0.120 4.120 19 C -0.077 4.077 20 C -0.137 4.137 21 C -0.136 4.136 22 C 0.123 3.877 23 H 0.027 0.973 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -6.394 16.682 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.708 3.292 14 O -0.951 6.951 15 O -0.951 6.951 16 N -0.857 5.857 17 C -0.005 4.005 18 C -0.158 4.158 19 C -0.079 4.079 20 C -0.195 4.195 21 C -0.193 4.193 22 C -0.002 4.002 23 H 0.046 0.954 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.014 -5.431 16.590 17.715 hybrid contribution 0.790 -1.048 -1.237 1.804 sum 3.804 -6.479 15.353 17.093 Atomic orbital electron populations 1.22269 0.96898 1.00613 1.02302 1.17937 0.92844 0.92217 0.89086 1.22267 0.99692 0.97813 1.02296 1.20901 1.31770 1.12080 0.89407 0.92404 1.24937 0.94885 0.94988 0.98909 1.69792 1.36241 1.22576 1.23582 0.86589 0.79140 0.79704 0.82141 1.20279 1.21161 1.20286 1.30572 1.11211 1.12810 1.16913 1.05308 0.74421 0.74646 0.74848 1.93526 1.29281 1.86582 1.85693 1.93530 1.78250 1.37635 1.85680 1.58897 1.29675 1.47166 1.49931 1.21626 0.84727 0.99401 0.94781 1.22796 0.96079 0.98877 0.98085 1.21797 0.95276 0.96087 0.94697 1.21764 1.00387 0.99003 0.98316 1.21731 1.02175 0.94662 1.00762 1.22096 0.97869 0.88479 0.91774 0.95395 0.88643 0.94490 0.94503 0.88643 0.95409 0.92683 0.86529 0.86519 0.91833 0.91286 0.90580 0.90302 0.92286 0.92482 0.92177 0.92255 0.92289 0.92225 0.89943 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 7.78 37.16 0.29 -3.80 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.09 7.78 37.16 0.29 -3.80 16 4 C -0.50 -13.35 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.32 9.35 55.43 0.52 -23.81 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.58 -11.72 5.12 37.16 0.19 -11.53 16 13 S 2.61 50.49 4.68 -107.50 -0.50 49.99 16 14 O -0.96 -20.72 14.90 -57.54 -0.86 -21.58 16 15 O -0.96 -20.81 15.22 -57.54 -0.88 -21.69 16 16 N -1.02 -15.18 3.61 -111.42 -0.40 -15.58 16 17 C 0.12 1.48 6.49 -3.07 -0.02 1.46 16 18 C -0.12 -1.10 5.94 -24.76 -0.15 -1.25 16 19 C -0.08 -0.75 0.96 -152.22 -0.15 -0.89 16 20 C -0.14 -1.34 8.61 37.16 0.32 -1.02 16 21 C -0.14 -1.02 8.68 37.16 0.32 -0.70 16 22 C 0.12 1.54 6.00 -2.53 -0.02 1.52 16 23 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 24 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 28 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 31 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.62 8.00 -51.93 -0.42 0.20 16 35 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.68 7.80 -51.93 -0.40 0.28 16 39 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 43 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -31.31 337.74 -8.85 -40.16 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.44 Total: 1.73 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 0.63 Total: -30.05 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.12 Total: -39.39 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.73 Total: -43.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 50.49 SS G_CDS: -0.50 Total: 49.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.31 -8.85 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336261822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.104 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds