Wall clock time and date at job start Tue Mar 31 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47596 * 2 1 4 4 C 1.50705 * 109.47159 * 239.99609 * 2 1 3 5 5 H 1.07997 * 120.00004 * 240.00611 * 4 2 1 6 6 C 1.37877 * 119.99883 * 60.00391 * 4 2 1 7 7 N 1.31513 * 119.99808 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47124 * 60.00188 * 8 6 4 10 10 H 1.48505 * 109.46956 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47334 * 300.00067 * 8 6 4 12 12 C 1.53005 * 109.46916 * 120.00156 * 2 1 3 13 13 S 1.81400 * 109.46901 * 299.99870 * 12 2 1 14 14 O 1.42096 * 110.54691 * 68.37396 * 13 12 2 15 15 O 1.42108 * 110.54495 * 291.62323 * 13 12 2 16 16 N 1.65602 * 104.44912 * 180.02562 * 13 12 2 17 17 C 1.47018 * 125.65057 * 89.97409 * 16 13 12 18 18 C 1.54325 * 107.40412 * 178.89919 * 17 16 13 19 19 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 20 20 C 1.53000 * 110.89394 * 277.26684 * 19 18 17 21 21 C 1.52998 * 111.06990 * 153.48436 * 19 18 17 22 22 C 1.47426 * 125.64425 * 270.01348 * 16 13 12 23 23 H 1.08999 * 109.47176 * 300.00378 * 1 2 3 24 24 H 1.09001 * 109.46747 * 60.00051 * 1 2 3 25 25 H 1.08996 * 109.47906 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47538 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47006 * 300.00317 * 3 2 1 28 28 H 1.08999 * 109.47167 * 59.99617 * 3 2 1 29 29 H 0.97003 * 120.00480 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47145 * 179.97438 * 12 2 1 31 31 H 1.08997 * 109.47403 * 59.99426 * 12 2 1 32 32 H 1.09002 * 109.88241 * 298.39447 * 17 16 13 33 33 H 1.09000 * 109.88049 * 59.40576 * 17 16 13 34 34 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 35 35 H 1.09002 * 110.72265 * 219.52294 * 18 17 16 36 36 H 1.08996 * 109.47127 * 172.23447 * 20 19 18 37 37 H 1.08997 * 109.46908 * 292.23241 * 20 19 18 38 38 H 1.09001 * 109.46975 * 52.23341 * 20 19 18 39 39 H 1.08993 * 109.47390 * 307.66314 * 21 19 18 40 40 H 1.08998 * 109.47080 * 67.66707 * 21 19 18 41 41 H 1.09003 * 109.47219 * 187.66108 * 21 19 18 42 42 H 1.08999 * 110.36956 * 322.93619 * 22 16 13 43 43 H 1.09001 * 110.36709 * 85.14812 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4100 2.8545 16 7 2.0540 -0.7400 3.9936 17 6 3.3495 -0.5025 4.6467 18 6 3.4902 -1.5371 5.7831 19 6 2.0163 -1.9391 6.0681 20 6 1.3447 -0.9266 6.9980 21 6 1.9341 -3.3519 6.6494 22 6 1.3971 -1.8856 4.6491 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7088 1.1612 -3.4844 30 1 3.1300 -0.7217 1.2491 31 1 1.6765 -1.7489 1.2493 32 1 4.1571 -0.6314 3.9260 33 1 3.3777 0.5064 5.0583 34 1 4.0672 -2.3998 5.4501 35 1 3.9458 -1.0835 6.6634 36 1 0.2808 -1.1516 7.0723 37 1 1.7984 -0.9853 7.9873 38 1 1.4764 0.0783 6.5968 39 1 2.4778 -4.0423 6.0047 40 1 2.3758 -3.3610 7.6459 41 1 0.8901 -3.6589 6.7120 42 1 0.3212 -1.7218 4.7106 43 1 1.6094 -2.8064 4.1059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336261822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:35 Heat of formation + Delta-G solvation = -102.919821 kcal Electronic energy + Delta-G solvation = -22830.310171 eV Core-core repulsion = 19615.446702 eV Total energy + Delta-G solvation = -3214.863469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09633 -38.16378 -38.15328 -36.92503 -34.28124 -33.64789 -30.52949 -28.40460 -28.15115 -27.73004 -27.27230 -26.81017 -23.24139 -21.31139 -20.14508 -19.83554 -18.76021 -17.89150 -17.25221 -16.89687 -16.67437 -16.20976 -15.32227 -15.12251 -15.05320 -14.76990 -14.48013 -14.45678 -13.90835 -13.81137 -13.63909 -13.50731 -13.14988 -13.08533 -12.88427 -12.82321 -12.76820 -12.55807 -12.43403 -12.35356 -12.20162 -12.15669 -11.99128 -11.64632 -11.60448 -11.50572 -11.38914 -11.35962 -10.67556 -10.42945 -9.85496 -8.04352 -6.23601 -0.68831 1.44872 1.45038 1.52670 1.80580 2.43370 2.87512 3.10280 3.18381 3.49406 3.70938 3.93980 3.99809 4.13038 4.32607 4.39217 4.46495 4.55936 4.58272 4.76831 4.81105 4.81726 4.82738 4.89222 4.93059 4.96138 5.03742 5.06178 5.09377 5.18167 5.23886 5.31118 5.34992 5.40888 5.45509 5.50950 5.60514 5.62060 5.93571 6.08202 6.31543 6.80499 7.44704 8.95496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.004579 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.655053 B = 6113.731342 C = 6385.447933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.158 4.158 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.625 3.375 14 O -0.988 6.988 15 O -0.989 6.989 16 N -1.017 6.017 17 C 0.106 3.894 18 C -0.110 4.110 19 C -0.073 4.073 20 C -0.140 4.140 21 C -0.131 4.131 22 C 0.109 3.891 23 H 0.030 0.970 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -8.458 18.099 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.066 3.934 3 C -0.216 4.216 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.716 4.716 13 S 2.725 3.275 14 O -0.978 6.978 15 O -0.979 6.979 16 N -0.856 5.856 17 C -0.019 4.019 18 C -0.148 4.148 19 C -0.074 4.074 20 C -0.197 4.197 21 C -0.189 4.189 22 C -0.015 4.015 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.494 -7.497 18.002 20.011 hybrid contribution 0.322 -0.399 -1.601 1.681 sum 4.816 -7.896 16.401 18.829 Atomic orbital electron populations 1.22194 0.97709 1.00457 1.01277 1.17942 0.92385 0.92167 0.90901 1.22192 0.99782 0.98375 1.01265 1.21242 1.31849 1.12356 0.90367 0.91939 1.25696 0.95109 0.95648 1.01720 1.69937 1.37068 1.23685 1.23985 0.85638 0.78745 0.78716 0.78679 1.19649 1.21219 1.19664 1.30498 1.12314 1.13263 1.15562 1.04421 0.73650 0.74302 0.75167 1.93482 1.31170 1.86985 1.86204 1.93484 1.78570 1.39640 1.86202 1.58500 1.31006 1.47586 1.48498 1.21963 0.83520 1.00329 0.96093 1.22830 0.95950 0.98574 0.97479 1.21828 0.95240 0.97557 0.92823 1.21801 1.00650 0.97822 0.99453 1.21714 1.02634 0.92925 1.01603 1.22446 0.97286 0.88004 0.93795 0.95086 0.90950 0.94129 0.94142 0.90947 0.95113 0.92857 0.84826 0.84840 0.90834 0.92110 0.88725 0.88296 0.92535 0.90253 0.94370 0.91459 0.90664 0.92155 0.91353 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.08 7.78 71.98 0.56 -7.52 16 2 C 0.07 3.37 0.52 -52.93 -0.03 3.35 16 3 C -0.16 -8.07 7.78 71.98 0.56 -7.51 16 4 C -0.52 -27.41 8.01 25.60 0.21 -27.20 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.95 5.15 84.65 0.44 1.38 16 7 N -0.91 -50.82 9.35 21.45 0.20 -50.62 16 8 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C -0.58 -23.00 5.12 71.98 0.37 -22.63 16 13 S 2.62 101.09 4.68 -56.49 -0.26 100.82 16 14 O -0.99 -43.00 14.90 -127.65 -1.90 -44.90 16 15 O -0.99 -43.10 15.22 -127.65 -1.94 -45.05 16 16 N -1.02 -29.00 3.61 -506.42 -1.83 -30.83 16 17 C 0.11 2.40 6.49 86.73 0.56 2.96 16 18 C -0.11 -1.64 5.94 31.87 0.19 -1.45 16 19 C -0.07 -1.21 0.96 -50.70 -0.05 -1.26 16 20 C -0.14 -2.46 8.61 71.98 0.62 -1.84 16 21 C -0.13 -1.51 8.68 71.98 0.62 -0.88 16 22 C 0.11 2.54 6.00 86.86 0.52 3.06 16 23 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 24 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 25 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 28 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 29 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 31 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.11 8.00 -2.39 -0.02 1.09 16 35 H 0.10 1.13 8.05 -2.39 -0.02 1.11 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.04 0.83 7.80 -2.39 -0.02 0.81 16 39 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 43 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 Total: -1.00 -67.50 337.74 1.82 -65.68 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.96 Total: 20.11 kcal Atomic # 6 Polarization: -64.12 SS G_CDS: 4.57 Total: -59.55 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.63 Total: -81.45 kcal Atomic # 8 Polarization: -86.11 SS G_CDS: -3.85 Total: -89.95 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 101.09 SS G_CDS: -0.26 Total: 100.82 kcal Total: -67.50 1.82 -65.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336261822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.244 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds