Wall clock time and date at job start Tue Mar 31 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53070 * 109.44404 * 2 1 4 4 C 1.53195 * 109.29524 * 181.23493 * 3 2 1 5 5 N 1.46919 * 108.89273 * 305.57804 * 4 3 2 6 6 S 1.65601 * 120.63059 * 233.51576 * 5 4 3 7 7 O 1.42102 * 104.27974 * 206.07188 * 6 5 4 8 8 O 1.42099 * 104.27772 * 333.92946 * 6 5 4 9 9 C 1.81404 * 104.45141 * 90.00188 * 6 5 4 10 10 C 1.52993 * 109.47314 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47113 * 299.99687 * 10 9 6 12 12 C 1.53002 * 109.47347 * 59.99605 * 10 9 6 13 13 C 1.50699 * 109.47149 * 179.97438 * 10 9 6 14 14 H 1.08001 * 119.99856 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99971 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00116 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46726 * 90.00830 * 17 15 13 19 19 H 1.48500 * 109.46804 * 210.00208 * 17 15 13 20 20 H 1.48496 * 109.47281 * 330.00363 * 17 15 13 21 21 C 1.46928 * 118.73982 * 53.53793 * 5 4 3 22 22 C 1.53039 * 109.45888 * 120.20474 * 2 1 3 23 23 H 1.08999 * 109.47154 * 299.79587 * 1 2 3 24 24 H 1.09003 * 109.46825 * 59.79972 * 1 2 3 25 25 H 1.08996 * 109.47631 * 179.79296 * 1 2 3 26 26 H 1.09007 * 109.45871 * 240.17139 * 2 1 3 27 27 H 1.08997 * 109.38860 * 61.35680 * 3 2 1 28 28 H 1.09003 * 109.62046 * 301.25023 * 3 2 1 29 29 H 1.09002 * 109.58720 * 185.71834 * 4 3 2 30 30 H 1.08996 * 109.58651 * 65.43731 * 4 3 2 31 31 H 1.09005 * 109.46450 * 300.00349 * 9 6 5 32 32 H 1.09000 * 109.47355 * 59.99698 * 9 6 5 33 33 H 1.09000 * 109.47259 * 60.00185 * 11 10 9 34 34 H 1.08991 * 109.47490 * 180.02562 * 11 10 9 35 35 H 1.09007 * 109.47397 * 300.00295 * 11 10 9 36 36 H 1.08996 * 109.46841 * 60.00166 * 12 10 9 37 37 H 1.09001 * 109.47070 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47159 * 299.99897 * 12 10 9 39 39 H 0.96999 * 120.00390 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.58787 * 66.18123 * 21 5 4 41 41 H 1.09007 * 109.58600 * 186.46436 * 21 5 4 42 42 H 1.09002 * 109.49876 * 58.67511 * 22 2 1 43 43 H 1.09005 * 109.52615 * 298.59760 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4434 0.0000 4 6 3.5711 1.4395 -0.0312 5 7 4.0676 0.6215 1.0837 6 16 5.1661 1.2379 2.1587 7 8 5.8514 0.0956 2.6534 8 8 5.8515 2.2417 1.4226 9 6 4.1518 1.9861 3.4634 10 6 5.0626 2.5982 4.5296 11 6 5.9460 1.5051 5.1342 12 6 5.9454 3.6722 3.8908 13 6 4.2200 3.2203 5.6131 14 1 3.1426 3.1832 5.5476 15 6 4.8245 3.8368 6.6880 16 7 6.1364 3.8824 6.7676 17 14 3.7800 4.6086 8.0307 18 1 3.5023 3.5989 9.0836 19 1 4.5090 5.7571 8.6263 20 1 2.4985 5.0833 7.4497 21 6 3.5713 -0.7540 1.2264 22 6 2.0398 -0.7259 1.2471 23 1 -0.3633 0.5107 0.8918 24 1 -0.3633 0.5170 -0.8882 25 1 -0.3634 -1.0276 -0.0037 26 1 1.8931 -0.5112 -0.8916 27 1 1.6952 1.9487 0.9023 28 1 1.6591 1.9659 -0.8778 29 1 3.9413 2.4597 0.0710 30 1 3.9163 1.0185 -0.9754 31 1 3.5227 2.7651 3.0326 32 1 3.5226 1.2211 3.9182 33 1 6.5555 1.0555 4.3504 34 1 6.5945 1.9410 5.8941 35 1 5.3171 0.7399 5.5893 36 1 5.3160 4.4509 3.4600 37 1 6.5939 4.1086 4.6505 38 1 6.5549 3.2226 3.1069 39 1 6.5617 4.3165 7.5236 40 1 3.9144 -1.3555 0.3846 41 1 3.9436 -1.1821 2.1572 42 1 1.6573 -1.7466 1.2558 43 1 1.6975 -0.2016 2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336265846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:15 Heat of formation + Delta-G solvation = -90.060749 kcal Electronic energy + Delta-G solvation = -23020.696270 eV Core-core repulsion = 19806.390412 eV Total energy + Delta-G solvation = -3214.305858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.72664 -36.59062 -36.25867 -35.28708 -33.73338 -31.65289 -31.11587 -27.80413 -26.60342 -25.70887 -25.21980 -23.38206 -22.69193 -20.28823 -19.29532 -18.44192 -17.34995 -15.97066 -15.81414 -15.39239 -14.82503 -14.69973 -14.44136 -14.21598 -14.21347 -13.68409 -13.05293 -12.99991 -12.74260 -12.50071 -12.21362 -12.11981 -11.89340 -11.67580 -11.44392 -11.24788 -11.09720 -11.06253 -10.94853 -10.91654 -10.69729 -10.45099 -10.43869 -10.33089 -10.26017 -10.08503 -9.64484 -9.54865 -8.88756 -8.59215 -8.39872 -6.02998 -4.14969 0.86564 3.12447 3.25585 3.32879 3.34870 4.34100 4.42870 4.59042 4.59258 4.69762 4.74280 5.07986 5.11826 5.22265 5.31521 5.41630 5.49118 5.51648 5.63863 5.68145 5.68953 5.78674 5.79777 5.80692 5.99716 6.03236 6.03493 6.29345 6.32169 6.40962 6.71579 6.75637 6.80766 6.91858 7.05408 7.32133 7.51113 7.68113 7.98596 8.10269 8.33713 8.83477 9.50354 10.98295 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.005378 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.801307 B = 5205.546336 C = 5858.229342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.133 4.133 4 C 0.121 3.879 5 N -1.009 6.009 6 S 2.593 3.407 7 O -0.963 6.963 8 O -0.963 6.963 9 C -0.581 4.581 10 C 0.081 3.919 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.501 4.501 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.121 3.879 22 C -0.133 4.133 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.027 0.973 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 -7.203 -12.559 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.172 4.172 4 C -0.004 4.004 5 N -0.845 5.845 6 S 2.692 3.308 7 O -0.954 6.954 8 O -0.953 6.953 9 C -0.714 4.714 10 C 0.079 3.921 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.541 4.541 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.004 4.004 22 C -0.172 4.172 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.936 -7.211 -12.584 16.533 hybrid contribution -1.323 0.576 1.023 1.769 sum -9.260 -6.635 -11.561 16.230 Atomic orbital electron populations 1.21838 0.95250 1.01551 1.01811 1.21064 0.95341 0.96068 0.98336 1.22034 0.95606 0.96784 1.02761 1.21339 0.93779 0.95727 0.89577 1.58013 1.63399 1.21242 1.41821 1.05724 0.75342 0.74538 0.75208 1.93528 1.70767 1.50045 1.81011 1.93527 1.70762 1.60688 1.70372 1.30568 1.14056 1.11456 1.15354 1.17931 0.91259 0.92440 0.90456 1.22267 1.00326 0.97430 1.02049 1.22267 1.00325 0.99682 0.99797 1.20942 0.92480 1.35948 1.04689 0.92368 1.24938 0.95026 0.95842 0.97926 1.69800 1.08106 1.43710 1.30563 0.86544 0.80276 0.78928 0.81937 1.20649 1.21115 1.19987 1.21349 0.93766 0.82325 1.02986 1.22023 0.95606 1.00880 0.98657 0.92566 0.92808 0.92809 0.91216 0.91191 0.90919 0.89131 0.91589 0.86573 0.86574 0.95392 0.88676 0.94528 0.94521 0.88679 0.95386 0.92752 0.91586 0.89106 0.90945 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.82 2.68 -90.57 -0.24 -1.06 16 3 C -0.13 -1.33 5.37 -26.59 -0.14 -1.47 16 4 C 0.12 1.48 6.31 -3.71 -0.02 1.46 16 5 N -1.01 -14.57 3.22 -113.52 -0.37 -14.94 16 6 S 2.59 49.20 4.45 -107.50 -0.48 48.72 16 7 O -0.96 -20.46 14.34 -57.54 -0.83 -21.29 16 8 O -0.96 -20.47 14.34 -57.54 -0.83 -21.29 16 9 C -0.58 -11.48 5.12 37.15 0.19 -11.29 16 10 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 11 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 12 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 13 C -0.50 -13.21 8.01 -34.44 -0.28 -13.49 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.12 1.48 6.32 -3.71 -0.02 1.46 16 22 C -0.13 -1.32 5.36 -26.61 -0.14 -1.47 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.17 7.10 -51.93 -0.37 0.80 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 32 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 33 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 34 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 35 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 38 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.17 7.09 -51.92 -0.37 0.80 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -30.90 333.44 -9.28 -40.18 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.39 Total: 2.30 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 0.09 Total: -30.67 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.15 Total: -38.64 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.65 Total: -42.58 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 49.20 SS G_CDS: -0.48 Total: 48.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.90 -9.28 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336265846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.881 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds