Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53070 * 109.44404 * 2 1 4 4 C 1.53195 * 109.29524 * 181.23493 * 3 2 1 5 5 N 1.46919 * 108.89273 * 305.57804 * 4 3 2 6 6 S 1.65601 * 120.63059 * 233.51576 * 5 4 3 7 7 O 1.42102 * 104.27974 * 206.07188 * 6 5 4 8 8 O 1.42099 * 104.27772 * 333.92946 * 6 5 4 9 9 C 1.81404 * 104.45141 * 90.00188 * 6 5 4 10 10 C 1.52993 * 109.47314 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47113 * 299.99687 * 10 9 6 12 12 C 1.53002 * 109.47347 * 59.99605 * 10 9 6 13 13 C 1.50699 * 109.47149 * 179.97438 * 10 9 6 14 14 H 1.08001 * 119.99856 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99971 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00116 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46726 * 90.00830 * 17 15 13 19 19 H 1.48500 * 109.46804 * 210.00208 * 17 15 13 20 20 H 1.48496 * 109.47281 * 330.00363 * 17 15 13 21 21 C 1.46928 * 118.73982 * 53.53793 * 5 4 3 22 22 C 1.53039 * 109.45888 * 120.20474 * 2 1 3 23 23 H 1.08999 * 109.47154 * 299.79587 * 1 2 3 24 24 H 1.09003 * 109.46825 * 59.79972 * 1 2 3 25 25 H 1.08996 * 109.47631 * 179.79296 * 1 2 3 26 26 H 1.09007 * 109.45871 * 240.17139 * 2 1 3 27 27 H 1.08997 * 109.38860 * 61.35680 * 3 2 1 28 28 H 1.09003 * 109.62046 * 301.25023 * 3 2 1 29 29 H 1.09002 * 109.58720 * 185.71834 * 4 3 2 30 30 H 1.08996 * 109.58651 * 65.43731 * 4 3 2 31 31 H 1.09005 * 109.46450 * 300.00349 * 9 6 5 32 32 H 1.09000 * 109.47355 * 59.99698 * 9 6 5 33 33 H 1.09000 * 109.47259 * 60.00185 * 11 10 9 34 34 H 1.08991 * 109.47490 * 180.02562 * 11 10 9 35 35 H 1.09007 * 109.47397 * 300.00295 * 11 10 9 36 36 H 1.08996 * 109.46841 * 60.00166 * 12 10 9 37 37 H 1.09001 * 109.47070 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47159 * 299.99897 * 12 10 9 39 39 H 0.96999 * 120.00390 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.58787 * 66.18123 * 21 5 4 41 41 H 1.09007 * 109.58600 * 186.46436 * 21 5 4 42 42 H 1.09002 * 109.49876 * 58.67511 * 22 2 1 43 43 H 1.09005 * 109.52615 * 298.59760 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4434 0.0000 4 6 3.5711 1.4395 -0.0312 5 7 4.0676 0.6215 1.0837 6 16 5.1661 1.2379 2.1587 7 8 5.8514 0.0956 2.6534 8 8 5.8515 2.2417 1.4226 9 6 4.1518 1.9861 3.4634 10 6 5.0626 2.5982 4.5296 11 6 5.9460 1.5051 5.1342 12 6 5.9454 3.6722 3.8908 13 6 4.2200 3.2203 5.6131 14 1 3.1426 3.1832 5.5476 15 6 4.8245 3.8368 6.6880 16 7 6.1364 3.8824 6.7676 17 14 3.7800 4.6086 8.0307 18 1 3.5023 3.5989 9.0836 19 1 4.5090 5.7571 8.6263 20 1 2.4985 5.0833 7.4497 21 6 3.5713 -0.7540 1.2264 22 6 2.0398 -0.7259 1.2471 23 1 -0.3633 0.5107 0.8918 24 1 -0.3633 0.5170 -0.8882 25 1 -0.3634 -1.0276 -0.0037 26 1 1.8931 -0.5112 -0.8916 27 1 1.6952 1.9487 0.9023 28 1 1.6591 1.9659 -0.8778 29 1 3.9413 2.4597 0.0710 30 1 3.9163 1.0185 -0.9754 31 1 3.5227 2.7651 3.0326 32 1 3.5226 1.2211 3.9182 33 1 6.5555 1.0555 4.3504 34 1 6.5945 1.9410 5.8941 35 1 5.3171 0.7399 5.5893 36 1 5.3160 4.4509 3.4600 37 1 6.5939 4.1086 4.6505 38 1 6.5549 3.2226 3.1069 39 1 6.5617 4.3165 7.5236 40 1 3.9144 -1.3555 0.3846 41 1 3.9436 -1.1821 2.1572 42 1 1.6573 -1.7466 1.2558 43 1 1.6975 -0.2016 2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336265846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -108.809142 kcal Electronic energy + Delta-G solvation = -23021.509261 eV Core-core repulsion = 19806.390412 eV Total energy + Delta-G solvation = -3215.118849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61507 -38.18591 -38.13792 -36.90408 -34.64807 -33.63518 -31.99784 -28.70951 -28.22295 -27.71198 -27.25700 -24.25884 -23.59026 -21.46146 -20.88676 -19.73117 -18.77724 -17.90172 -17.16054 -16.95436 -16.67166 -15.62434 -15.48084 -15.34740 -15.05006 -14.89051 -14.66817 -14.58224 -14.43385 -13.91505 -13.60490 -13.38837 -12.99380 -12.95854 -12.89268 -12.79174 -12.65324 -12.53496 -12.50577 -12.20179 -12.15494 -12.09393 -11.97142 -11.76840 -11.58530 -11.39729 -11.23044 -11.14478 -10.62674 -10.42663 -9.86999 -8.03846 -6.22731 -0.63105 1.43203 1.44837 1.53631 1.80378 2.43432 2.90327 3.17576 3.23530 3.66419 3.90812 3.92457 4.03390 4.11704 4.26920 4.28510 4.45518 4.58085 4.61215 4.77473 4.78327 4.84258 4.84632 4.90014 4.94699 4.96516 4.97941 5.06235 5.06767 5.19575 5.29715 5.32192 5.36576 5.48133 5.48778 5.61232 5.63223 5.74313 5.95401 6.09926 6.33015 6.81746 7.45558 8.96073 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.005378 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.801307 B = 5205.546336 C = 5858.229342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.131 4.131 4 C 0.112 3.888 5 N -1.001 6.001 6 S 2.608 3.392 7 O -0.989 6.989 8 O -0.989 6.989 9 C -0.583 4.583 10 C 0.069 3.931 11 C -0.158 4.158 12 C -0.158 4.158 13 C -0.517 4.517 14 H 0.062 0.938 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.112 3.888 22 C -0.130 4.130 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 -7.898 -13.772 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.170 4.170 4 C -0.013 4.013 5 N -0.840 5.840 6 S 2.707 3.293 7 O -0.980 6.980 8 O -0.980 6.980 9 C -0.716 4.716 10 C 0.067 3.933 11 C -0.216 4.216 12 C -0.216 4.216 13 C -0.556 4.556 14 H 0.080 0.920 15 C -0.182 4.182 16 N -0.547 5.547 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.013 4.013 22 C -0.169 4.169 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.157 -7.902 -13.791 18.863 hybrid contribution -0.635 0.748 1.324 1.648 sum -10.792 -7.155 -12.467 17.975 Atomic orbital electron populations 1.21803 0.94192 1.02209 1.01928 1.21079 0.96151 0.95240 0.98197 1.22050 0.93684 0.97814 1.03406 1.21622 0.95490 0.94984 0.89213 1.57678 1.62927 1.22284 1.41097 1.04931 0.75531 0.73722 0.75119 1.93485 1.72011 1.50678 1.81791 1.93484 1.72007 1.61748 1.70728 1.30495 1.13782 1.12379 1.14909 1.17929 0.91688 0.92206 0.91526 1.22190 1.00229 0.97637 1.01551 1.22190 1.00229 1.00042 0.99146 1.21278 0.92889 1.36049 1.05406 0.92018 1.25682 0.96018 0.96427 1.00026 1.69942 1.09433 1.44257 1.31049 0.85610 0.78969 0.77991 0.79382 1.20311 1.21174 1.19196 1.21632 0.95469 0.80926 1.03282 1.22039 0.93691 1.02288 0.98923 0.93238 0.91929 0.91927 0.90133 0.91997 0.88806 0.90167 0.89838 0.85039 0.85017 0.95031 0.91044 0.94168 0.94156 0.91049 0.95027 0.92896 0.89831 0.90139 0.88831 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.15 16 2 C -0.09 -1.31 2.68 -10.76 -0.03 -1.34 16 3 C -0.13 -2.25 5.37 30.68 0.16 -2.08 16 4 C 0.11 2.49 6.31 86.36 0.54 3.04 16 5 N -1.00 -27.33 3.22 -513.07 -1.65 -28.98 16 6 S 2.61 97.73 4.45 -56.49 -0.25 97.47 16 7 O -0.99 -41.92 14.34 -127.65 -1.83 -43.75 16 8 O -0.99 -41.93 14.34 -127.65 -1.83 -43.76 16 9 C -0.58 -22.65 5.12 71.98 0.37 -22.29 16 10 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 11 C -0.16 -7.99 7.78 71.98 0.56 -7.43 16 12 C -0.16 -7.99 7.77 71.98 0.56 -7.43 16 13 C -0.52 -27.18 8.01 25.60 0.21 -26.98 16 14 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.02 0.95 5.15 84.66 0.44 1.39 16 16 N -0.91 -50.67 9.35 21.45 0.20 -50.47 16 17 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.11 2.49 6.32 86.36 0.55 3.04 16 22 C -0.13 -2.24 5.36 30.67 0.16 -2.08 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.97 7.10 -2.39 -0.02 1.95 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 32 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 33 H 0.03 1.52 5.47 -2.39 -0.01 1.51 16 34 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 35 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 38 H 0.03 1.53 5.46 -2.39 -0.01 1.51 16 39 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.97 7.09 -2.38 -0.02 1.95 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -65.92 333.44 1.78 -64.14 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.97 Total: 21.02 kcal Atomic # 6 Polarization: -64.14 SS G_CDS: 4.15 Total: -59.99 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.45 Total: -79.45 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -3.66 Total: -87.50 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 97.73 SS G_CDS: -0.25 Total: 97.47 kcal Total: -65.92 1.78 -64.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336265846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.668 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds