Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38098 * 119.95605 * 2 1 4 4 C 1.38502 * 120.38919 * 180.27383 * 3 2 1 5 5 C 1.37827 * 120.30090 * 359.97438 * 4 3 2 6 6 C 1.39659 * 119.90724 * 0.02562 * 5 4 3 7 7 C 1.47539 * 120.19293 * 179.97438 * 6 5 4 8 8 O 1.21594 * 119.99963 * 228.58365 * 7 6 5 9 9 N 1.34782 * 120.00233 * 48.57622 * 7 6 5 10 10 C 1.46921 * 120.62569 * 5.29021 * 9 7 6 11 11 C 1.53624 * 108.54471 * 126.36710 * 10 9 7 12 12 C 1.53036 * 109.24393 * 54.84867 * 11 10 9 13 13 C 1.50697 * 109.45069 * 178.49717 * 12 11 10 14 14 H 1.07998 * 119.99582 * 120.06345 * 13 12 11 15 15 C 1.37876 * 120.00461 * 300.06590 * 13 12 11 16 16 N 1.31518 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00277 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47242 * 90.00022 * 17 15 13 19 19 H 1.48507 * 109.47228 * 210.00008 * 17 15 13 20 20 H 1.48505 * 109.47357 * 329.99869 * 17 15 13 21 21 C 1.53037 * 109.53859 * 298.51602 * 12 11 10 22 22 C 1.46917 * 120.62998 * 185.56387 * 9 7 6 23 23 C 1.38660 * 119.95977 * 180.27260 * 2 1 3 24 24 O 1.35664 * 120.15032 * 359.70479 * 23 2 1 25 25 H 1.08993 * 109.47348 * 269.72595 * 1 2 3 26 26 H 1.08995 * 109.47013 * 29.73020 * 1 2 3 27 27 H 1.09004 * 109.46837 * 149.72300 * 1 2 3 28 28 H 1.08007 * 119.80466 * 0.24809 * 3 2 1 29 29 H 1.08007 * 119.85156 * 179.97438 * 4 3 2 30 30 H 1.08007 * 120.04727 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.58561 * 246.19471 * 10 9 7 32 32 H 1.09004 * 109.58987 * 6.61842 * 10 9 7 33 33 H 1.09002 * 109.63165 * 294.86121 * 11 10 9 34 34 H 1.09006 * 109.43570 * 174.72450 * 11 10 9 35 35 H 1.09007 * 109.45617 * 58.53503 * 12 11 10 36 36 H 0.97000 * 120.00350 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.49642 * 301.40611 * 21 12 11 38 38 H 1.09007 * 109.49527 * 181.31270 * 21 12 11 39 39 H 1.09002 * 109.59418 * 353.37648 * 22 9 7 40 40 H 1.09003 * 109.58757 * 113.66336 * 22 9 7 41 41 H 0.96693 * 113.99759 * 90.00081 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1965 0.0000 4 6 3.5816 1.2070 -0.0057 5 6 4.2859 0.0223 -0.0109 6 6 3.6012 -1.1949 -0.0110 7 6 4.3489 -2.4669 -0.0171 8 8 4.0532 -3.3421 -0.8077 9 7 5.3598 -2.6586 0.8535 10 6 5.6547 -1.6598 1.8898 11 6 5.6676 -2.3623 3.2559 12 6 6.6534 -3.5321 3.2122 13 6 6.6972 -4.2021 4.5613 14 1 6.4298 -5.2442 4.6556 15 6 7.0786 -3.4847 5.6753 16 7 7.4037 -2.2155 5.5605 17 14 7.1323 -4.3150 7.3477 18 1 8.4801 -4.8980 7.5680 19 1 6.8468 -3.3139 8.4068 20 1 6.1124 -5.3933 7.3980 21 6 6.2018 -4.5427 2.1554 22 6 6.1915 -3.8675 0.7803 23 6 2.1995 -1.2013 -0.0057 24 8 1.5235 -2.3775 -0.0053 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3633 0.8924 -0.5096 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6527 2.1296 0.0041 29 1 4.1121 2.1478 -0.0061 30 1 5.3659 0.0352 -0.0149 31 1 6.6290 -1.2106 1.6977 32 1 4.8859 -0.8870 1.8819 33 1 4.6696 -2.7360 3.4850 34 1 5.9769 -1.6544 4.0249 35 1 7.6464 -3.1608 2.9587 36 1 7.6724 -1.7109 6.3441 37 1 5.1989 -4.8959 2.3949 38 1 6.8915 -5.3868 2.1411 39 1 5.7771 -4.5521 0.0402 40 1 7.2082 -3.5950 0.4971 41 1 1.3236 -2.7165 -0.8885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336576135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -62.116290 kcal Electronic energy + Delta-G solvation = -23385.034707 eV Core-core repulsion = 20036.496660 eV Total energy + Delta-G solvation = -3348.538047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53625 -38.86081 -36.83693 -36.51832 -33.62161 -32.89325 -31.24197 -30.23945 -29.76957 -26.96344 -26.28954 -24.08319 -22.63196 -22.13712 -21.70033 -19.92792 -18.66052 -18.09054 -16.94020 -16.23590 -16.17544 -15.65076 -15.56004 -14.60793 -14.52966 -14.36845 -13.75134 -13.43642 -13.33199 -13.06664 -12.78739 -12.70663 -12.48952 -12.26440 -12.25350 -11.95368 -11.60087 -11.51661 -11.21697 -10.93958 -10.65055 -10.62678 -10.37184 -10.08538 -9.67419 -9.47065 -9.16448 -9.01165 -8.75585 -8.61114 -8.36862 -7.99106 -6.02443 -4.08292 0.93161 1.17329 2.96796 3.29013 3.35497 3.36124 3.39987 3.69550 4.18457 4.41860 4.64872 4.68790 4.84189 5.09272 5.25634 5.27309 5.38976 5.48218 5.58970 5.65460 5.70668 5.81429 5.94051 5.99472 6.07863 6.14492 6.19020 6.26491 6.32017 6.35104 6.46277 6.66735 6.67640 6.90801 7.04907 7.16810 7.29926 7.66749 7.67150 7.90139 7.93067 8.04598 8.41256 8.51472 8.94934 9.56731 11.03174 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.004378 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.125681 B = 6393.873580 C = 6797.667092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.131 4.131 5 C -0.076 4.076 6 C -0.142 4.142 7 C 0.562 3.438 8 O -0.553 6.553 9 N -0.592 5.592 10 C 0.098 3.902 11 C -0.123 4.123 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.112 3.888 23 C 0.153 3.847 24 O -0.485 6.485 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 8.311 -11.960 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.095 4.095 6 C -0.146 4.146 7 C 0.350 3.650 8 O -0.433 6.433 9 N -0.323 5.323 10 C -0.024 4.024 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.010 4.010 23 C 0.107 3.893 24 O -0.296 6.296 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.105 8.029 -11.636 16.816 hybrid contribution 0.133 -0.384 0.644 0.762 sum -8.973 7.645 -10.992 16.117 Atomic orbital electron populations 1.20637 0.90344 1.02536 1.02721 1.20157 0.96882 0.92236 1.02890 1.21048 0.94208 0.97110 0.98537 1.21064 0.94113 0.98073 1.01683 1.21264 1.00365 0.90908 0.96949 1.20382 0.93628 0.94457 1.06101 1.18054 0.79707 0.86296 0.80907 1.90702 1.67545 1.44220 1.40866 1.48145 1.31015 1.22132 1.30974 1.22312 1.00067 0.90595 0.89379 1.22092 0.99606 1.00867 0.93545 1.18643 0.94383 0.91214 0.92771 1.21209 1.44775 0.96699 0.92263 0.92691 1.24952 0.95120 0.94883 0.98974 1.69835 1.46044 1.07550 1.29719 0.86614 0.78352 0.79282 0.83888 1.20711 1.21250 1.19965 1.22005 1.01134 0.99287 0.93710 1.21726 0.93446 0.86156 0.99640 1.18207 0.88110 0.85435 0.97592 1.84721 1.75670 1.35580 1.33614 0.90912 0.91597 0.91377 0.85419 0.85183 0.84930 0.91917 0.90983 0.94222 0.87748 0.95452 0.93000 0.92865 0.92084 0.90279 0.92054 0.74836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.79 36.01 0.35 -0.62 16 2 C -0.12 -1.44 5.89 -104.52 -0.62 -2.05 16 3 C -0.09 -0.94 9.68 -39.54 -0.38 -1.33 16 4 C -0.13 -1.42 10.02 -39.63 -0.40 -1.81 16 5 C -0.08 -1.00 7.54 -39.20 -0.30 -1.30 16 6 C -0.14 -2.26 4.84 -104.85 -0.51 -2.76 16 7 C 0.56 10.57 6.95 -12.47 -0.09 10.48 16 8 O -0.55 -11.51 15.93 -4.41 -0.07 -11.58 16 9 N -0.59 -11.18 2.97 -173.73 -0.52 -11.70 16 10 C 0.10 1.84 5.29 -3.49 -0.02 1.82 16 11 C -0.12 -2.81 5.17 -26.39 -0.14 -2.94 16 12 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 13 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -24.63 11.30 55.43 0.63 -24.00 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 22 C 0.11 2.11 6.44 -3.71 -0.02 2.09 16 23 C 0.15 2.24 6.66 -38.70 -0.26 1.99 16 24 O -0.49 -7.16 11.58 -28.39 -0.33 -7.49 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 28 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.63 7.33 -52.48 -0.38 1.24 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.24 5.12 -51.93 -0.27 0.97 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 2.62 6.03 -51.93 -0.31 2.31 16 35 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.39 4.34 9.06 45.56 0.41 4.75 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -31.23 331.44 -8.47 -39.71 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.07 Total: 4.77 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.09 Total: -10.76 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.11 Total: -35.70 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.40 Total: -19.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.23 -8.47 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336576135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.410 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds