Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38098 * 119.95605 * 2 1 4 4 C 1.38502 * 120.38919 * 180.27383 * 3 2 1 5 5 C 1.37827 * 120.30090 * 359.97438 * 4 3 2 6 6 C 1.39659 * 119.90724 * 0.02562 * 5 4 3 7 7 C 1.47539 * 120.19293 * 179.97438 * 6 5 4 8 8 O 1.21594 * 119.99963 * 228.58365 * 7 6 5 9 9 N 1.34782 * 120.00233 * 48.57622 * 7 6 5 10 10 C 1.46921 * 120.62569 * 5.29021 * 9 7 6 11 11 C 1.53624 * 108.54471 * 126.36710 * 10 9 7 12 12 C 1.53036 * 109.24393 * 54.84867 * 11 10 9 13 13 C 1.50697 * 109.45069 * 178.49717 * 12 11 10 14 14 H 1.07998 * 119.99582 * 120.06345 * 13 12 11 15 15 C 1.37876 * 120.00461 * 300.06590 * 13 12 11 16 16 N 1.31518 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00277 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47242 * 90.00022 * 17 15 13 19 19 H 1.48507 * 109.47228 * 210.00008 * 17 15 13 20 20 H 1.48505 * 109.47357 * 329.99869 * 17 15 13 21 21 C 1.53037 * 109.53859 * 298.51602 * 12 11 10 22 22 C 1.46917 * 120.62998 * 185.56387 * 9 7 6 23 23 C 1.38660 * 119.95977 * 180.27260 * 2 1 3 24 24 O 1.35664 * 120.15032 * 359.70479 * 23 2 1 25 25 H 1.08993 * 109.47348 * 269.72595 * 1 2 3 26 26 H 1.08995 * 109.47013 * 29.73020 * 1 2 3 27 27 H 1.09004 * 109.46837 * 149.72300 * 1 2 3 28 28 H 1.08007 * 119.80466 * 0.24809 * 3 2 1 29 29 H 1.08007 * 119.85156 * 179.97438 * 4 3 2 30 30 H 1.08007 * 120.04727 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.58561 * 246.19471 * 10 9 7 32 32 H 1.09004 * 109.58987 * 6.61842 * 10 9 7 33 33 H 1.09002 * 109.63165 * 294.86121 * 11 10 9 34 34 H 1.09006 * 109.43570 * 174.72450 * 11 10 9 35 35 H 1.09007 * 109.45617 * 58.53503 * 12 11 10 36 36 H 0.97000 * 120.00350 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.49642 * 301.40611 * 21 12 11 38 38 H 1.09007 * 109.49527 * 181.31270 * 21 12 11 39 39 H 1.09002 * 109.59418 * 353.37648 * 22 9 7 40 40 H 1.09003 * 109.58757 * 113.66336 * 22 9 7 41 41 H 0.96693 * 113.99759 * 90.00081 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1965 0.0000 4 6 3.5816 1.2070 -0.0057 5 6 4.2859 0.0223 -0.0109 6 6 3.6012 -1.1949 -0.0110 7 6 4.3489 -2.4669 -0.0171 8 8 4.0532 -3.3421 -0.8077 9 7 5.3598 -2.6586 0.8535 10 6 5.6547 -1.6598 1.8898 11 6 5.6676 -2.3623 3.2559 12 6 6.6534 -3.5321 3.2122 13 6 6.6972 -4.2021 4.5613 14 1 6.4298 -5.2442 4.6556 15 6 7.0786 -3.4847 5.6753 16 7 7.4037 -2.2155 5.5605 17 14 7.1323 -4.3150 7.3477 18 1 8.4801 -4.8980 7.5680 19 1 6.8468 -3.3139 8.4068 20 1 6.1124 -5.3933 7.3980 21 6 6.2018 -4.5427 2.1554 22 6 6.1915 -3.8675 0.7803 23 6 2.1995 -1.2013 -0.0057 24 8 1.5235 -2.3775 -0.0053 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3633 0.8924 -0.5096 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6527 2.1296 0.0041 29 1 4.1121 2.1478 -0.0061 30 1 5.3659 0.0352 -0.0149 31 1 6.6290 -1.2106 1.6977 32 1 4.8859 -0.8870 1.8819 33 1 4.6696 -2.7360 3.4850 34 1 5.9769 -1.6544 4.0249 35 1 7.6464 -3.1608 2.9587 36 1 7.6724 -1.7109 6.3441 37 1 5.1989 -4.8959 2.3949 38 1 6.8915 -5.3868 2.1411 39 1 5.7771 -4.5521 0.0402 40 1 7.2082 -3.5950 0.4971 41 1 1.3236 -2.7165 -0.8885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336576135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -80.991138 kcal Electronic energy + Delta-G solvation = -23385.853181 eV Core-core repulsion = 20036.496660 eV Total energy + Delta-G solvation = -3349.356521 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74980 -40.14233 -38.34888 -37.66610 -35.38441 -34.05158 -32.85304 -31.78477 -30.99298 -28.13017 -27.76610 -25.56599 -24.20809 -23.66501 -22.68593 -21.49277 -20.12206 -19.19210 -18.59897 -17.95610 -17.40629 -16.88013 -16.68109 -16.47255 -15.86359 -15.57905 -14.97685 -14.94182 -14.60519 -14.45625 -14.31380 -14.13497 -13.89965 -13.40647 -13.25761 -13.20644 -13.11116 -12.84771 -12.64033 -12.47217 -12.43275 -12.17130 -12.01376 -11.66461 -11.51325 -11.03806 -11.02124 -10.76267 -10.41901 -9.84226 -9.56560 -9.54598 -8.09424 -6.22530 -0.07921 0.25504 1.40311 1.42085 1.51327 1.61445 2.03853 2.43106 2.63965 3.17093 3.21863 3.41995 3.82874 4.03062 4.05911 4.21548 4.29287 4.31325 4.35650 4.43356 4.52387 4.62983 4.67673 4.74604 4.81544 4.83508 4.88539 4.92812 5.14483 5.18523 5.25328 5.26360 5.37701 5.39005 5.46963 5.52967 5.62492 5.83930 5.95657 6.07906 6.36951 6.41416 6.71431 6.85979 7.05595 7.45001 8.94346 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.004378 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.125681 B = 6393.873580 C = 6797.667092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.124 4.124 5 C -0.084 4.084 6 C -0.175 4.175 7 C 0.560 3.440 8 O -0.581 6.581 9 N -0.597 5.597 10 C 0.113 3.887 11 C -0.114 4.114 12 C 0.047 3.953 13 C -0.538 4.538 14 H 0.046 0.954 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 0.949 3.051 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.276 1.276 21 C -0.114 4.114 22 C 0.117 3.883 23 C 0.130 3.870 24 O -0.504 6.504 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.745 10.440 -12.342 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C -0.098 4.098 4 C -0.142 4.142 5 C -0.103 4.103 6 C -0.178 4.178 7 C 0.350 3.650 8 O -0.463 6.463 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.152 4.152 12 C 0.028 3.972 13 C -0.576 4.576 14 H 0.064 0.936 15 C -0.180 4.180 16 N -0.550 5.550 17 Si 0.775 3.225 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.201 1.201 21 C -0.152 4.152 22 C -0.005 4.005 23 C 0.084 3.916 24 O -0.316 6.316 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.788 10.161 -12.028 18.540 hybrid contribution 0.304 -1.012 0.747 1.294 sum -9.484 9.149 -11.281 17.346 Atomic orbital electron populations 1.20703 0.88522 1.03917 1.03005 1.20489 0.98306 0.91676 1.02016 1.21544 0.94315 0.97942 0.96028 1.21475 0.94539 0.98388 0.99762 1.21425 1.00827 0.90857 0.97189 1.20333 0.94156 0.93825 1.09512 1.18594 0.79156 0.87210 0.80063 1.90665 1.68116 1.45661 1.41895 1.48183 1.31369 1.22047 1.31189 1.22133 1.01510 0.90344 0.86846 1.21865 0.97636 1.00095 0.95624 1.18606 0.93821 0.92214 0.92555 1.21536 1.45354 0.96629 0.94049 0.93618 1.25622 0.94789 0.95502 1.02063 1.69935 1.46138 1.08345 1.30587 0.85698 0.78398 0.78366 0.80032 1.20025 1.20639 1.20055 1.21856 1.00000 0.98999 0.94332 1.21652 0.94586 0.86385 0.97926 1.18532 0.87997 0.86279 0.98811 1.84677 1.75756 1.36344 1.34841 0.91020 0.88863 0.91470 0.81659 0.81814 0.84417 0.90550 0.89167 0.96441 0.89950 0.97211 0.92823 0.94671 0.91352 0.90145 0.90274 0.73676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.79 71.24 0.70 -0.96 16 2 C -0.12 -2.66 5.89 -19.80 -0.12 -2.78 16 3 C -0.08 -1.35 9.68 22.30 0.22 -1.14 16 4 C -0.12 -2.22 10.02 22.24 0.22 -2.00 16 5 C -0.08 -2.06 7.54 22.52 0.17 -1.89 16 6 C -0.17 -5.45 4.84 -20.01 -0.10 -5.55 16 7 C 0.56 21.20 6.95 86.70 0.60 21.80 16 8 O -0.58 -24.66 15.93 5.26 0.08 -24.57 16 9 N -0.60 -22.63 2.97 -821.82 -2.44 -25.07 16 10 C 0.11 4.21 5.29 86.51 0.46 4.67 16 11 C -0.11 -5.31 5.17 30.82 0.16 -5.15 16 12 C 0.05 2.31 2.06 -11.52 -0.02 2.29 16 13 C -0.54 -29.75 8.56 25.60 0.22 -29.53 16 14 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 15 C 0.02 1.06 5.30 84.65 0.45 1.51 16 16 N -0.91 -50.68 11.30 21.45 0.24 -50.44 16 17 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.11 -4.91 5.30 30.67 0.16 -4.75 16 22 C 0.12 4.41 6.44 86.37 0.56 4.97 16 23 C 0.13 3.73 6.66 22.84 0.15 3.89 16 24 O -0.50 -15.11 11.58 -80.54 -0.93 -16.04 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 27 H 0.07 1.07 7.53 -2.39 -0.02 1.05 16 28 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 29 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.14 3.12 7.33 -2.91 -0.02 3.10 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.09 3.03 5.12 -2.38 -0.01 3.02 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 4.23 6.03 -2.38 -0.01 4.22 16 35 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 39 H 0.08 3.03 7.00 -2.39 -0.02 3.02 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.40 9.25 9.06 -74.06 -0.67 8.58 16 Total: -1.00 -68.64 331.44 3.18 -65.46 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.37 Total: 19.81 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 3.83 Total: -14.63 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.19 Total: -75.51 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.85 Total: -40.62 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.64 3.18 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336576135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.529 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds