Wall clock time and date at job start Tue Mar 31 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46839 * 111.00092 * 45.78796 * 13 12 11 15 15 C 1.53039 * 109.52305 * 185.83868 * 14 13 12 16 16 C 1.53125 * 109.27890 * 300.81995 * 15 14 13 17 17 O 1.42901 * 109.57453 * 177.58778 * 16 15 14 18 18 C 1.42901 * 113.99916 * 90.28439 * 17 16 15 19 19 C 1.53000 * 109.47199 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46936 * 64.99851 * 19 18 17 21 21 C 1.53118 * 109.15877 * 57.65365 * 16 15 14 22 22 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 23 23 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 25 25 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 28 28 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 29 29 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 30 30 H 1.09001 * 109.46400 * 305.85111 * 14 13 12 31 31 H 1.08995 * 109.46502 * 65.82322 * 14 13 12 32 32 H 1.08994 * 109.50793 * 180.87369 * 15 14 13 33 33 H 1.09003 * 109.50071 * 60.75960 * 15 14 13 34 34 H 1.08991 * 109.52310 * 297.74805 * 16 15 14 35 35 H 1.08999 * 109.47312 * 299.99813 * 18 17 16 36 36 H 1.09003 * 109.46971 * 59.99662 * 18 17 16 37 37 H 1.08991 * 109.47073 * 185.00077 * 19 18 17 38 38 H 1.09004 * 109.47065 * 305.00634 * 19 18 17 39 39 H 0.96703 * 114.00151 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.49987 * 182.40758 * 21 16 15 41 41 H 1.09004 * 109.50544 * 62.28642 * 21 16 15 42 42 H 1.09005 * 109.46090 * 294.18098 * 22 13 12 43 43 H 1.09009 * 109.46391 * 54.14781 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 1.5569 -7.8414 -0.9785 15 6 0.9482 -9.2396 -0.8499 16 6 2.0377 -10.2891 -1.0867 17 8 1.4886 -11.5969 -0.9128 18 6 0.9594 -12.1691 -2.1106 19 6 0.4022 -13.5614 -1.8078 20 8 -0.7114 -13.4461 -0.9198 21 6 3.1715 -10.0723 -0.0807 22 6 3.7157 -8.6500 -0.2316 23 1 -0.4850 0.8401 -0.0004 24 1 3.1242 -3.7307 0.8928 25 1 3.1243 -3.7322 -0.8872 26 1 1.3701 -5.4839 0.8935 27 1 1.3706 -5.4849 -0.8864 28 1 3.7602 -6.1485 -0.8846 29 1 3.7591 -6.1471 0.8954 30 1 0.7868 -7.0919 -0.7963 31 1 1.9594 -7.7116 -1.9830 32 1 0.1579 -9.3620 -1.5904 33 1 0.5331 -9.3652 0.1502 34 1 2.4259 -10.1888 -2.1002 35 1 0.1615 -11.5338 -2.4951 36 1 1.7511 -12.2490 -2.8557 37 1 0.0796 -14.0334 -2.7358 38 1 1.1774 -14.1694 -1.3413 39 1 -1.1156 -14.2923 -0.6837 40 1 3.9697 -10.7895 -0.2718 41 1 2.7914 -10.2110 0.9315 42 1 4.1083 -8.5163 -1.2397 43 1 4.5137 -8.4877 0.4932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336719477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:40 Heat of formation + Delta-G solvation = -135.446033 kcal Electronic energy + Delta-G solvation = -20573.932187 eV Core-core repulsion = 17357.658276 eV Total energy + Delta-G solvation = -3216.273912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55797 -38.82035 -37.35621 -35.28966 -34.60061 -32.42639 -31.86124 -30.19665 -27.88504 -26.75786 -24.71091 -23.99221 -23.18327 -21.83026 -20.80727 -19.55247 -18.55368 -18.01110 -17.16515 -16.89661 -16.54380 -16.20186 -16.03491 -15.87453 -15.49834 -15.25233 -15.00708 -14.75290 -14.26846 -14.06389 -13.74359 -13.59094 -13.26820 -13.16712 -12.95775 -12.90247 -12.55440 -12.40133 -12.34213 -12.19706 -12.00196 -11.78438 -11.60526 -11.45239 -11.30408 -11.13356 -10.94758 -10.40267 -10.30752 -9.27627 -8.67321 -8.37277 -6.13910 1.31030 1.40847 1.47642 1.73967 2.28355 2.64301 2.89971 2.96719 3.32201 3.41603 3.76944 3.79222 3.99685 4.05507 4.06224 4.21439 4.26169 4.27821 4.30841 4.35976 4.40437 4.50423 4.55836 4.56723 4.64931 4.71160 4.79706 4.81912 4.84488 4.91638 4.95663 5.07595 5.17040 5.19539 5.26082 5.32342 5.39182 6.07284 6.16091 6.17759 6.29665 6.92993 7.04511 8.71903 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038930 B = 0.002322 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.061387 B =12056.734742 C =12576.874095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.013 3.987 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.201 6.201 10 C -0.086 4.086 11 C -0.090 4.090 12 C 0.071 3.929 13 N -0.549 5.549 14 C 0.051 3.949 15 C -0.131 4.131 16 C 0.091 3.909 17 O -0.394 6.394 18 C 0.049 3.951 19 C 0.076 3.924 20 O -0.595 6.595 21 C -0.106 4.106 22 C 0.059 3.941 23 H 0.271 0.729 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.396 0.604 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -27.089 -5.243 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.817 3.183 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.028 5.972 10 C -0.236 4.236 11 C -0.128 4.128 12 C -0.058 4.058 13 N -0.274 5.274 14 C -0.076 4.076 15 C -0.169 4.169 16 C 0.033 3.967 17 O -0.313 6.313 18 C -0.027 4.027 19 C -0.002 4.002 20 O -0.404 6.404 21 C -0.144 4.144 22 C -0.068 4.068 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.246 0.754 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.028 -26.742 -4.659 27.606 hybrid contribution 1.513 1.115 -0.902 2.085 sum 6.542 -25.627 -5.561 27.027 Atomic orbital electron populations 1.70156 1.07713 1.28607 1.47928 1.26103 0.96071 1.03207 0.93784 0.85049 0.77911 0.75974 0.79377 1.18854 1.19993 1.18907 1.23008 0.94740 0.91932 1.58921 0.90840 1.84661 1.14206 1.01283 1.97043 1.23147 1.00084 0.97358 1.02991 1.21333 0.98144 0.90730 1.02631 1.22012 0.95788 0.86481 1.01484 1.61987 1.11222 1.03967 1.50262 1.22148 0.94756 0.97326 0.93409 1.22011 0.98505 0.93854 1.02544 1.22183 0.93232 0.82050 0.99238 1.87960 1.78627 1.31081 1.33672 1.22842 0.97754 0.94580 0.87554 1.22328 0.88418 0.95256 0.94156 1.86538 1.48312 1.37185 1.68338 1.21591 0.97185 0.95952 0.99657 1.22108 0.93192 0.90844 1.00684 0.91970 0.91777 0.91903 0.91719 0.91502 0.94114 0.89919 0.90565 0.94348 0.91234 0.92005 0.91363 0.93418 0.89849 0.89585 0.92290 0.75436 0.89339 0.91591 0.93985 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.51 13.22 21.65 0.29 -55.22 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 44.28 29.55 68.60 2.03 46.30 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -31.47 9.50 67.96 0.65 -30.83 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 9 S -0.20 -10.87 21.44 -56.49 -1.21 -12.08 16 10 C -0.09 -3.51 5.67 71.98 0.41 -3.10 16 11 C -0.09 -2.95 4.47 30.59 0.14 -2.82 16 12 C 0.07 1.86 5.27 86.30 0.46 2.31 16 13 N -0.55 -13.32 4.81 -896.35 -4.31 -17.62 16 14 C 0.05 1.24 4.85 86.33 0.42 1.65 16 15 C -0.13 -2.96 5.72 30.65 0.18 -2.79 16 16 C 0.09 1.77 2.68 30.68 0.08 1.86 16 17 O -0.39 -8.51 9.96 -144.34 -1.44 -9.95 16 18 C 0.05 0.76 6.13 71.98 0.44 1.21 16 19 C 0.08 0.94 7.43 71.98 0.53 1.47 16 20 O -0.60 -10.05 13.62 -144.34 -1.97 -12.01 16 21 C -0.11 -1.95 5.75 30.64 0.18 -1.78 16 22 C 0.06 1.12 5.42 86.32 0.47 1.59 16 23 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 24 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 2.22 6.21 -2.39 -0.01 2.21 16 28 H 0.04 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.06 5.81 -2.39 -0.01 2.04 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.49 7.96 -2.39 -0.02 1.47 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.14 7.79 -2.39 -0.02 1.12 16 35 H 0.05 0.81 7.96 -2.39 -0.02 0.79 16 36 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.40 2.73 9.12 -74.06 -0.68 2.05 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.09 1.54 8.12 -2.38 -0.02 1.52 16 Total: -1.00 -72.65 357.12 -1.91 -74.55 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.29 Total: 16.01 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.41 Total: -29.98 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -4.02 Total: -72.85 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -3.40 Total: -21.96 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -10.87 SS G_CDS: -1.21 Total: -12.08 kcal Total: -72.65 -1.91 -74.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336719477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.893 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds