Wall clock time and date at job start Tue Mar 31 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 110.05860 * 2 1 4 4 C 1.54266 * 110.03473 * 238.57812 * 2 1 3 5 5 C 1.54887 * 104.20059 * 217.10882 * 4 2 1 6 6 C 1.54887 * 102.74588 * 37.94033 * 5 4 2 7 7 C 1.53876 * 110.03119 * 121.41385 * 2 1 3 8 8 H 1.09001 * 110.03463 * 238.56639 * 7 2 1 9 9 C 1.53004 * 110.07040 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46756 * 183.64482 * 9 7 2 11 11 S 1.65604 * 119.99867 * 164.99988 * 10 9 7 12 12 O 1.42098 * 104.27651 * 181.06749 * 11 10 9 13 13 O 1.42106 * 104.27399 * 308.92572 * 11 10 9 14 14 C 1.81401 * 104.44986 * 64.99587 * 11 10 9 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47308 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99594 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99989 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47245 * 89.99982 * 20 18 16 22 22 H 1.48496 * 109.47249 * 210.00039 * 20 18 16 23 23 H 1.48497 * 109.47330 * 329.99992 * 20 18 16 24 24 H 1.08997 * 109.46966 * 298.58799 * 1 2 3 25 25 H 1.09006 * 109.46671 * 58.58703 * 1 2 3 26 26 H 1.08998 * 109.47050 * 178.58184 * 1 2 3 27 27 H 1.09008 * 109.47158 * 181.41375 * 3 2 1 28 28 H 1.09004 * 109.47079 * 301.41130 * 3 2 1 29 29 H 1.08999 * 109.47690 * 61.41414 * 3 2 1 30 30 H 1.08997 * 110.48797 * 335.78980 * 4 2 1 31 31 H 1.08998 * 110.48595 * 98.29545 * 4 2 1 32 32 H 1.09003 * 110.75447 * 279.63123 * 5 4 2 33 33 H 1.08997 * 110.76217 * 156.25802 * 5 4 2 34 34 H 1.09001 * 110.48816 * 203.37854 * 6 5 4 35 35 H 1.09004 * 110.48531 * 80.74069 * 6 5 4 36 36 H 1.08995 * 109.47295 * 303.64044 * 9 7 2 37 37 H 1.08998 * 109.47229 * 63.64785 * 9 7 2 38 38 H 0.97003 * 120.00528 * 344.99330 * 10 9 7 39 39 H 1.09000 * 109.47547 * 300.00340 * 14 11 10 40 40 H 1.08998 * 109.46927 * 60.00038 * 14 11 10 41 41 H 1.09003 * 109.46689 * 300.00026 * 15 14 11 42 42 H 1.08998 * 109.47343 * 60.00070 * 15 14 11 43 43 H 0.97006 * 119.99948 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4371 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3136 -1.5009 -0.7190 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7535 1.2338 8 1 2.6867 -0.0953 1.8325 9 6 0.8867 -1.2667 2.0752 10 7 1.4012 -1.9052 3.2892 11 16 0.3811 -2.2199 4.5553 12 8 1.2184 -2.8053 5.5428 13 8 -0.2759 -0.9822 4.7918 14 6 -0.7860 -3.4455 3.9023 15 6 -1.7930 -3.8215 4.9911 16 6 -2.7622 -4.8402 4.4489 17 1 -2.6695 -5.1846 3.4296 18 6 -3.7672 -5.3324 5.2542 19 7 -4.6133 -6.2210 4.7808 20 14 -3.9271 -4.7372 7.0176 21 1 -4.8153 -3.5478 7.0600 22 1 -4.5073 -5.8182 7.8543 23 1 -2.5860 -4.3723 7.5405 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8771 26 1 -0.3633 -1.0273 -0.0254 27 1 3.1444 1.4261 -0.0254 28 1 1.6762 1.9622 -0.8771 29 1 1.7175 1.9472 0.9023 30 1 1.3143 -1.4660 -1.5966 31 1 2.3275 -0.0539 -2.0263 32 1 4.1710 -0.8292 -0.6750 33 1 3.5325 -2.3680 -1.3421 34 1 3.7636 -2.1038 1.3311 35 1 2.2770 -2.8426 0.6572 36 1 0.2424 -0.4313 2.3493 37 1 0.3146 -1.9925 1.4975 38 1 2.3394 -2.1438 3.3515 39 1 -1.3157 -3.0239 3.0480 40 1 -0.2405 -4.3354 3.5884 41 1 -1.2636 -4.2430 5.8457 42 1 -2.3384 -2.9314 5.3047 43 1 -5.3202 -6.5676 5.3476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339109866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:16 Heat of formation + Delta-G solvation = -105.412374 kcal Electronic energy + Delta-G solvation = -21921.186069 eV Core-core repulsion = 18706.214515 eV Total energy + Delta-G solvation = -3214.971554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89023 -36.68475 -35.56120 -34.92359 -33.94222 -32.46252 -31.47627 -29.52689 -27.70397 -25.95983 -25.20513 -23.58190 -21.30366 -20.85708 -19.10693 -18.47447 -17.50902 -16.82620 -16.52267 -15.63432 -15.45352 -15.23274 -14.66588 -14.43220 -14.22137 -13.69566 -13.62438 -13.46691 -13.20066 -12.81344 -12.63324 -12.27320 -11.88812 -11.83867 -11.70556 -11.70227 -11.61333 -11.24987 -11.23734 -11.17839 -10.95883 -10.79298 -10.70827 -10.66278 -10.55564 -10.43461 -10.13279 -9.76127 -9.46692 -9.10906 -8.66027 -6.16372 -4.17553 0.70325 3.06520 3.26951 3.34293 3.38741 4.14269 4.24860 4.32297 4.36239 4.37085 4.64366 4.93374 5.05484 5.06162 5.09349 5.14950 5.16283 5.26089 5.29808 5.41644 5.48436 5.54689 5.55806 5.58369 5.65452 5.66708 5.74944 5.79234 5.87180 5.87633 5.98315 6.13153 6.14878 6.17875 6.25800 6.29764 6.82541 6.93712 7.09096 7.55261 8.36840 8.84692 9.43468 10.96024 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.003935 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.974161 B = 7114.157425 C = 7487.934566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.090 4.090 8 H 0.081 0.919 9 C 0.117 3.883 10 N -1.126 6.126 11 S 2.591 3.409 12 O -0.969 6.969 13 O -0.967 6.967 14 C -0.583 4.583 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.412 0.588 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.270 12.252 -12.079 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.161 4.161 7 C -0.110 4.110 8 H 0.099 0.901 9 C -0.009 4.009 10 N -0.884 5.884 11 S 2.688 3.312 12 O -0.959 6.959 13 O -0.957 6.957 14 C -0.716 4.716 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.245 0.755 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.985 12.628 -11.181 22.562 hybrid contribution -0.030 -0.327 0.334 0.468 sum 14.955 12.301 -10.847 22.195 Atomic orbital electron populations 1.22119 0.94216 1.02500 1.02236 1.21155 0.95746 0.95260 0.94229 1.21915 1.00729 0.95098 1.01858 1.22501 0.97349 0.98807 0.96662 1.22464 0.97656 0.99770 0.96282 1.22490 0.99530 0.97968 0.96137 1.22060 0.96207 0.97066 0.95638 0.90063 1.21673 0.96610 0.97442 0.85177 1.55739 1.22913 1.77085 1.32666 1.05524 0.75428 0.76466 0.73768 1.93555 1.65733 1.79922 1.56720 1.93542 1.76685 1.41693 1.83817 1.30291 1.14053 1.15635 1.11637 1.19409 0.94100 0.98529 0.92626 1.20850 1.11569 1.22757 1.00634 0.90437 1.24981 0.95183 0.94455 0.98478 1.69882 1.17062 1.29577 1.36870 0.86924 0.79392 0.79074 0.85061 1.19664 1.20765 1.18614 0.91765 0.92593 0.91797 0.92699 0.92653 0.92439 0.91295 0.91718 0.91710 0.91627 0.91610 0.90878 0.89896 0.91383 0.75505 0.85805 0.85535 0.94950 0.95370 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.20 37.16 0.27 -1.04 16 2 C -0.06 -0.51 0.94 -153.39 -0.14 -0.65 16 3 C -0.14 -1.03 8.15 37.16 0.30 -0.73 16 4 C -0.12 -0.85 5.90 -25.07 -0.15 -1.00 16 5 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 6 C -0.12 -1.00 5.83 -25.07 -0.15 -1.14 16 7 C -0.09 -0.79 2.70 -89.50 -0.24 -1.04 16 8 H 0.08 0.73 7.67 -51.93 -0.40 0.33 16 9 C 0.12 1.26 4.23 -4.04 -0.02 1.24 16 10 N -1.13 -13.77 5.79 -10.61 -0.06 -13.83 16 11 S 2.59 43.69 5.46 -107.50 -0.59 43.10 16 12 O -0.97 -19.09 18.08 -57.54 -1.04 -20.13 16 13 O -0.97 -18.93 17.50 -57.54 -1.01 -19.93 16 14 C -0.58 -10.59 6.01 37.16 0.22 -10.37 16 15 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 20 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 H 0.06 0.58 6.65 -51.93 -0.35 0.23 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 6.82 -51.93 -0.35 0.19 16 27 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 31 H 0.06 0.43 7.84 -51.93 -0.41 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.62 7.78 -51.93 -0.40 0.21 16 36 H 0.08 0.95 6.07 -51.93 -0.32 0.64 16 37 H 0.07 0.67 6.86 -51.93 -0.36 0.31 16 38 H 0.41 4.27 8.22 -34.47 -0.28 3.98 16 39 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 40 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 41 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 42 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -33.98 346.14 -9.42 -43.40 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.43 Total: 0.54 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -0.62 Total: -28.91 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.71 Total: -40.13 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.05 Total: -40.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 43.69 SS G_CDS: -0.59 Total: 43.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.98 -9.42 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339109866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.017 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds