Wall clock time and date at job start Tue Mar 31 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 110.05860 * 2 1 4 4 C 1.54266 * 110.03473 * 238.57812 * 2 1 3 5 5 C 1.54887 * 104.20059 * 217.10882 * 4 2 1 6 6 C 1.54887 * 102.74588 * 37.94033 * 5 4 2 7 7 C 1.53876 * 110.03119 * 121.41385 * 2 1 3 8 8 H 1.09001 * 110.03463 * 238.56639 * 7 2 1 9 9 C 1.53004 * 110.07040 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46756 * 183.64482 * 9 7 2 11 11 S 1.65604 * 119.99867 * 164.99988 * 10 9 7 12 12 O 1.42098 * 104.27651 * 181.06749 * 11 10 9 13 13 O 1.42106 * 104.27399 * 308.92572 * 11 10 9 14 14 C 1.81401 * 104.44986 * 64.99587 * 11 10 9 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47308 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99594 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99989 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47245 * 89.99982 * 20 18 16 22 22 H 1.48496 * 109.47249 * 210.00039 * 20 18 16 23 23 H 1.48497 * 109.47330 * 329.99992 * 20 18 16 24 24 H 1.08997 * 109.46966 * 298.58799 * 1 2 3 25 25 H 1.09006 * 109.46671 * 58.58703 * 1 2 3 26 26 H 1.08998 * 109.47050 * 178.58184 * 1 2 3 27 27 H 1.09008 * 109.47158 * 181.41375 * 3 2 1 28 28 H 1.09004 * 109.47079 * 301.41130 * 3 2 1 29 29 H 1.08999 * 109.47690 * 61.41414 * 3 2 1 30 30 H 1.08997 * 110.48797 * 335.78980 * 4 2 1 31 31 H 1.08998 * 110.48595 * 98.29545 * 4 2 1 32 32 H 1.09003 * 110.75447 * 279.63123 * 5 4 2 33 33 H 1.08997 * 110.76217 * 156.25802 * 5 4 2 34 34 H 1.09001 * 110.48816 * 203.37854 * 6 5 4 35 35 H 1.09004 * 110.48531 * 80.74069 * 6 5 4 36 36 H 1.08995 * 109.47295 * 303.64044 * 9 7 2 37 37 H 1.08998 * 109.47229 * 63.64785 * 9 7 2 38 38 H 0.97003 * 120.00528 * 344.99330 * 10 9 7 39 39 H 1.09000 * 109.47547 * 300.00340 * 14 11 10 40 40 H 1.08998 * 109.46927 * 60.00038 * 14 11 10 41 41 H 1.09003 * 109.46689 * 300.00026 * 15 14 11 42 42 H 1.08998 * 109.47343 * 60.00070 * 15 14 11 43 43 H 0.97006 * 119.99948 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4371 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3136 -1.5009 -0.7190 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7535 1.2338 8 1 2.6867 -0.0953 1.8325 9 6 0.8867 -1.2667 2.0752 10 7 1.4012 -1.9052 3.2892 11 16 0.3811 -2.2199 4.5553 12 8 1.2184 -2.8053 5.5428 13 8 -0.2759 -0.9822 4.7918 14 6 -0.7860 -3.4455 3.9023 15 6 -1.7930 -3.8215 4.9911 16 6 -2.7622 -4.8402 4.4489 17 1 -2.6695 -5.1846 3.4296 18 6 -3.7672 -5.3324 5.2542 19 7 -4.6133 -6.2210 4.7808 20 14 -3.9271 -4.7372 7.0176 21 1 -4.8153 -3.5478 7.0600 22 1 -4.5073 -5.8182 7.8543 23 1 -2.5860 -4.3723 7.5405 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8771 26 1 -0.3633 -1.0273 -0.0254 27 1 3.1444 1.4261 -0.0254 28 1 1.6762 1.9622 -0.8771 29 1 1.7175 1.9472 0.9023 30 1 1.3143 -1.4660 -1.5966 31 1 2.3275 -0.0539 -2.0263 32 1 4.1710 -0.8292 -0.6750 33 1 3.5325 -2.3680 -1.3421 34 1 3.7636 -2.1038 1.3311 35 1 2.2770 -2.8426 0.6572 36 1 0.2424 -0.4313 2.3493 37 1 0.3146 -1.9925 1.4975 38 1 2.3394 -2.1438 3.3515 39 1 -1.3157 -3.0239 3.0480 40 1 -0.2405 -4.3354 3.5884 41 1 -1.2636 -4.2430 5.8457 42 1 -2.3384 -2.9314 5.3047 43 1 -5.3202 -6.5676 5.3476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339109866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:16 Heat of formation + Delta-G solvation = -129.096551 kcal Electronic energy + Delta-G solvation = -21922.213092 eV Core-core repulsion = 18706.214515 eV Total energy + Delta-G solvation = -3215.998577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55795 -38.15910 -37.03516 -35.89606 -35.88675 -33.46774 -33.06464 -30.31704 -28.32414 -27.87084 -25.90228 -24.31482 -23.18275 -21.49929 -20.33975 -19.49715 -19.16699 -18.22412 -17.58668 -17.02825 -16.50338 -16.37481 -16.02558 -15.68960 -15.18294 -15.11640 -14.80957 -14.36727 -14.20385 -13.80151 -13.79901 -13.39868 -13.24673 -13.20770 -13.11766 -13.06197 -12.93692 -12.66711 -12.35919 -12.23738 -11.95770 -11.82773 -11.75868 -11.63485 -11.39384 -11.36585 -11.30761 -11.29441 -11.14976 -10.84054 -10.27427 -8.36260 -6.41879 -0.68777 1.32294 1.34220 1.44317 1.83380 2.29891 2.77020 2.97883 3.25834 3.58796 3.67626 3.73265 3.91125 4.09037 4.24227 4.36150 4.42786 4.46690 4.50089 4.57140 4.59180 4.61556 4.69957 4.88028 4.94404 4.99115 5.03459 5.08284 5.11211 5.13511 5.17863 5.19483 5.28393 5.33032 5.47529 5.48696 5.50750 5.56829 5.62121 6.15382 6.17234 6.64143 7.22616 8.79282 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.003935 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.974161 B = 7114.157425 C = 7487.934566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.087 4.087 8 H 0.082 0.918 9 C 0.107 3.893 10 N -1.107 6.107 11 S 2.623 3.377 12 O -0.995 6.995 13 O -0.992 6.992 14 C -0.589 4.589 15 C -0.018 4.018 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.940 5.940 20 Si 0.925 3.075 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.250 1.250 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.424 0.576 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.737 13.424 -12.324 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.063 4.063 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.107 4.107 8 H 0.101 0.899 9 C -0.019 4.019 10 N -0.869 5.869 11 S 2.719 3.281 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.720 4.720 15 C -0.057 4.057 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.580 5.580 20 Si 0.747 3.253 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.174 1.174 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.260 0.740 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.459 13.794 -11.429 24.326 hybrid contribution -0.452 -0.683 0.278 0.865 sum 16.007 13.111 -11.150 23.504 Atomic orbital electron populations 1.22150 0.94755 1.02322 1.02194 1.21163 0.95322 0.95683 0.94159 1.21904 1.01127 0.94587 1.01863 1.22494 0.97354 0.98853 0.96483 1.22457 0.97706 1.00052 0.95656 1.22520 0.99587 0.97360 0.96895 1.22057 0.95479 0.97510 0.95633 0.89936 1.21938 0.97673 0.97557 0.84691 1.55293 1.22803 1.76621 1.32232 1.04358 0.74818 0.75253 0.73716 1.93515 1.66205 1.80306 1.58533 1.93512 1.77567 1.42554 1.84562 1.30289 1.13826 1.17279 1.10638 1.19377 0.94617 0.97435 0.94267 1.21177 1.12410 1.23367 0.99624 0.93214 1.25861 0.95010 0.94683 1.02904 1.70008 1.18085 1.31219 1.38664 0.86030 0.80119 0.79109 0.80018 1.18501 1.19935 1.17351 0.92556 0.91906 0.92083 0.92067 0.92007 0.93087 0.91597 0.90894 0.91066 0.91159 0.90911 0.91307 0.90522 0.90310 0.73990 0.84238 0.84132 0.95017 0.95032 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 7.20 71.98 0.52 -1.95 16 2 C -0.06 -0.89 0.94 -51.46 -0.05 -0.93 16 3 C -0.14 -1.78 8.15 71.98 0.59 -1.19 16 4 C -0.11 -1.43 5.90 31.67 0.19 -1.24 16 5 C -0.12 -1.45 6.91 31.88 0.22 -1.23 16 6 C -0.13 -1.74 5.83 31.67 0.18 -1.56 16 7 C -0.09 -1.36 2.70 -10.07 -0.03 -1.39 16 8 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 9 C 0.11 2.12 4.23 86.38 0.37 2.48 16 10 N -1.11 -24.94 5.79 -187.49 -1.09 -26.03 16 11 S 2.62 84.57 5.46 -56.49 -0.31 84.26 16 12 O -1.00 -37.75 18.08 -127.65 -2.31 -40.06 16 13 O -0.99 -37.51 17.50 -127.65 -2.23 -39.74 16 14 C -0.59 -20.75 6.01 71.98 0.43 -20.31 16 15 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 16 C -0.53 -29.71 9.66 25.60 0.25 -29.46 16 17 H 0.05 2.99 7.99 -2.91 -0.02 2.96 16 18 C 0.01 0.81 5.47 84.65 0.46 1.27 16 19 N -0.94 -57.76 13.96 21.44 0.30 -57.46 16 20 Si 0.92 43.89 27.47 68.60 1.88 45.77 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 24 H 0.06 0.96 6.65 -2.39 -0.02 0.95 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.06 0.97 6.82 -2.39 -0.02 0.96 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.87 7.84 -2.39 -0.02 0.85 16 31 H 0.07 0.80 7.84 -2.39 -0.02 0.78 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.02 7.78 -2.38 -0.02 1.00 16 36 H 0.08 1.66 6.07 -2.39 -0.01 1.65 16 37 H 0.08 1.41 6.86 -2.39 -0.02 1.40 16 38 H 0.42 7.80 8.22 -96.74 -0.80 7.01 16 39 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 40 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 42 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 43 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -72.13 346.14 -0.37 -72.51 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.13 Total: 16.96 kcal Atomic # 6 Polarization: -59.47 SS G_CDS: 3.25 Total: -56.22 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -0.79 Total: -83.49 kcal Atomic # 8 Polarization: -75.26 SS G_CDS: -4.54 Total: -79.80 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Atomic # 16 Polarization: 84.57 SS G_CDS: -0.31 Total: 84.26 kcal Total: -72.13 -0.37 -72.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339109866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.590 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds