Wall clock time and date at job start Tue Mar 31 2020 06:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.54274 * 110.03394 * 238.56085 * 2 1 3 5 5 C 1.54887 * 104.19278 * 264.32408 * 4 2 1 6 6 C 1.54884 * 102.74892 * 322.05510 * 5 4 2 7 7 C 1.53875 * 110.03442 * 121.39092 * 2 1 3 8 8 H 1.09000 * 110.03418 * 0.02562 * 7 2 1 9 9 C 1.53000 * 110.03079 * 238.56911 * 7 2 1 10 10 N 1.46504 * 109.46557 * 174.99889 * 9 7 2 11 11 S 1.65608 * 119.99527 * 165.00135 * 10 9 7 12 12 O 1.42100 * 104.27448 * 181.07361 * 11 10 9 13 13 O 1.42104 * 104.27677 * 308.92591 * 11 10 9 14 14 C 1.81395 * 104.45006 * 65.00247 * 11 10 9 15 15 C 1.52997 * 109.46991 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47290 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99719 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00248 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99527 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 119.99882 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47281 * 90.00284 * 20 18 16 22 22 H 1.48502 * 109.47250 * 210.00300 * 20 18 16 23 23 H 1.48500 * 109.47489 * 330.00465 * 20 18 16 24 24 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 27 27 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 28 28 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 29 29 H 1.09005 * 109.47116 * 300.70023 * 3 2 1 30 30 H 1.09005 * 110.48346 * 23.00033 * 4 2 1 31 31 H 1.08997 * 110.48723 * 145.64261 * 4 2 1 32 32 H 1.09001 * 110.75560 * 203.73845 * 5 4 2 33 33 H 1.09001 * 110.75486 * 80.37018 * 5 4 2 34 34 H 1.09003 * 110.49017 * 279.26224 * 6 5 4 35 35 H 1.09010 * 110.48493 * 156.62125 * 6 5 4 36 36 H 1.08996 * 109.47511 * 294.99479 * 9 7 2 37 37 H 1.08998 * 109.47187 * 55.00383 * 9 7 2 38 38 H 0.96997 * 120.00457 * 344.99967 * 10 9 7 39 39 H 1.08998 * 109.46915 * 299.99552 * 14 11 10 40 40 H 1.08993 * 109.47608 * 59.99772 * 14 11 10 41 41 H 1.09005 * 109.47057 * 299.99719 * 15 14 11 42 42 H 1.08999 * 109.47440 * 59.99774 * 15 14 11 43 43 H 0.97004 * 119.99045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2366 5 6 2.3281 -2.1904 -0.7182 6 6 2.8875 -1.9403 0.7042 7 6 2.0571 -0.7530 1.2340 8 1 1.2230 -1.1188 1.8327 9 6 2.9409 0.1713 2.0740 10 7 3.3383 -0.5183 3.3040 11 16 4.5803 0.0779 4.2230 12 8 4.6951 -0.8447 5.2977 13 8 5.6436 0.2616 3.2985 14 6 3.9727 1.6791 4.8209 15 6 5.0438 2.3377 5.6927 16 6 4.5388 3.6677 6.1899 17 1 3.5528 4.0093 5.9116 18 6 5.3361 4.4490 6.9993 19 7 4.8955 5.6099 7.4327 20 14 7.0418 3.8586 7.4801 21 1 8.0296 4.3281 6.4756 22 1 7.3963 4.4036 8.8152 23 1 7.0557 2.3746 7.5317 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 -1.0274 -0.0250 26 1 -0.3634 0.5353 -0.8773 27 1 1.7055 1.9511 0.8962 28 1 3.1436 1.4273 -0.0126 29 1 1.6851 1.9586 -0.8837 30 1 1.3061 -0.7704 -2.0252 31 1 2.9811 -0.3007 -1.5966 32 1 3.0676 -2.6937 -1.3412 33 1 1.4031 -2.7654 -0.6740 34 1 3.9441 -1.6763 0.6578 35 1 2.7402 -2.8191 1.3321 36 1 3.8305 0.4399 1.5044 37 1 2.3851 1.0742 2.3270 38 1 2.8741 -1.3240 3.5800 39 1 3.7501 2.3237 3.9706 40 1 3.0676 1.5278 5.4090 41 1 5.2669 1.6933 6.5430 42 1 5.9487 2.4892 5.1042 43 1 5.4563 6.1593 8.0025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339109867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:19 Heat of formation + Delta-G solvation = -105.086462 kcal Electronic energy + Delta-G solvation = -21920.145680 eV Core-core repulsion = 18705.188258 eV Total energy + Delta-G solvation = -3214.957422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87813 -36.68146 -35.55951 -34.92022 -33.94274 -32.45135 -31.47621 -29.53375 -27.70341 -25.95922 -25.17535 -23.57347 -21.30344 -20.82925 -19.21490 -18.45830 -17.49474 -16.77911 -16.43268 -15.63376 -15.42796 -15.21526 -14.70621 -14.53752 -14.29264 -13.71484 -13.62078 -13.37206 -13.18143 -12.79736 -12.53085 -12.23530 -11.92308 -11.83562 -11.71138 -11.70401 -11.60676 -11.25689 -11.22228 -11.17777 -11.05797 -10.77537 -10.71110 -10.62342 -10.54348 -10.43307 -10.13504 -9.75957 -9.46339 -9.09448 -8.66060 -6.16481 -4.17596 0.70404 3.06832 3.26892 3.34230 3.38682 4.14654 4.25937 4.30543 4.36195 4.39447 4.64569 4.93476 5.06192 5.07154 5.10203 5.15391 5.17726 5.27218 5.30234 5.40983 5.48011 5.54581 5.56897 5.59203 5.65474 5.67231 5.75316 5.80802 5.87597 5.89079 5.99332 6.13143 6.15332 6.19265 6.27213 6.29412 6.82485 6.93647 7.09267 7.55225 8.36802 8.84636 9.43360 10.95935 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.003945 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.292954 B = 7095.916550 C = 7714.698569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.153 4.153 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.089 4.089 8 H 0.080 0.920 9 C 0.117 3.883 10 N -1.126 6.126 11 S 2.591 3.409 12 O -0.969 6.969 13 O -0.967 6.967 14 C -0.584 4.584 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.412 0.588 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 -13.622 -16.748 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 C -0.211 4.211 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.159 4.159 7 C -0.109 4.109 8 H 0.099 0.901 9 C -0.009 4.009 10 N -0.884 5.884 11 S 2.688 3.312 12 O -0.959 6.959 13 O -0.957 6.957 14 C -0.717 4.717 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.245 0.755 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.674 -13.753 -16.568 22.859 hybrid contribution 0.065 0.026 0.486 0.491 sum -7.609 -13.726 -16.082 22.471 Atomic orbital electron populations 1.21912 0.94187 1.01586 1.01864 1.21160 0.95543 0.95429 0.94272 1.22118 1.01612 0.95128 1.02194 1.22503 1.00915 0.95233 0.96677 1.22480 1.00603 0.96771 0.96405 1.22469 1.00044 0.97494 0.95907 1.22052 0.97791 0.95320 0.95710 0.90140 1.21687 0.99421 0.94958 0.84869 1.55730 1.56579 1.39721 1.36322 1.05518 0.74136 0.77653 0.73864 1.93556 1.85574 1.61033 1.55777 1.93542 1.52523 1.87202 1.62444 1.30292 1.11552 1.18705 1.11107 1.19408 0.92509 0.98335 0.94412 1.20854 1.03768 1.00291 1.30910 0.90436 1.24986 0.98290 0.94614 0.95228 1.69885 1.37537 1.11264 1.34696 0.86921 0.84853 0.80122 0.78538 1.19664 1.20761 1.18615 0.92443 0.92704 0.92653 0.91801 0.91785 0.92589 0.91710 0.91310 0.91686 0.91714 0.90894 0.91686 0.89972 0.91302 0.75509 0.85808 0.85536 0.94953 0.95371 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.14 37.16 0.30 -0.69 16 2 C -0.06 -0.50 0.94 -153.39 -0.14 -0.65 16 3 C -0.15 -1.29 7.19 37.16 0.27 -1.03 16 4 C -0.12 -0.87 5.90 -25.07 -0.15 -1.02 16 5 C -0.13 -0.94 6.91 -24.74 -0.17 -1.12 16 6 C -0.12 -1.08 6.19 -25.07 -0.16 -1.23 16 7 C -0.09 -0.78 2.62 -89.50 -0.23 -1.02 16 8 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 9 C 0.12 1.25 4.23 -4.04 -0.02 1.24 16 10 N -1.13 -13.66 5.70 -10.61 -0.06 -13.72 16 11 S 2.59 43.57 5.46 -107.50 -0.59 42.98 16 12 O -0.97 -19.07 18.08 -57.54 -1.04 -20.11 16 13 O -0.97 -18.83 17.50 -57.54 -1.01 -19.84 16 14 C -0.58 -10.61 6.01 37.16 0.22 -10.38 16 15 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 20 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.54 6.66 -51.93 -0.35 0.20 16 28 H 0.06 0.57 6.82 -51.93 -0.35 0.21 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 31 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.75 7.76 -51.93 -0.40 0.34 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.08 0.95 6.44 -51.93 -0.33 0.61 16 37 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 38 H 0.41 4.20 8.62 -34.48 -0.30 3.90 16 39 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 40 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 42 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -33.96 346.69 -9.43 -43.39 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.44 Total: 0.57 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: -0.62 Total: -29.06 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.71 Total: -40.03 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -2.05 Total: -39.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 43.57 SS G_CDS: -0.59 Total: 42.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.96 -9.43 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339109867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.699 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds