Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.54274 * 110.03394 * 238.56085 * 2 1 3 5 5 C 1.54887 * 104.19278 * 264.32408 * 4 2 1 6 6 C 1.54884 * 102.74892 * 322.05510 * 5 4 2 7 7 C 1.53875 * 110.03442 * 121.39092 * 2 1 3 8 8 H 1.09000 * 110.03418 * 0.02562 * 7 2 1 9 9 C 1.53000 * 110.03079 * 238.56911 * 7 2 1 10 10 N 1.46504 * 109.46557 * 174.99889 * 9 7 2 11 11 S 1.65608 * 119.99527 * 165.00135 * 10 9 7 12 12 O 1.42100 * 104.27448 * 181.07361 * 11 10 9 13 13 O 1.42104 * 104.27677 * 308.92591 * 11 10 9 14 14 C 1.81395 * 104.45006 * 65.00247 * 11 10 9 15 15 C 1.52997 * 109.46991 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47290 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99719 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00248 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99527 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 119.99882 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47281 * 90.00284 * 20 18 16 22 22 H 1.48502 * 109.47250 * 210.00300 * 20 18 16 23 23 H 1.48500 * 109.47489 * 330.00465 * 20 18 16 24 24 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 27 27 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 28 28 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 29 29 H 1.09005 * 109.47116 * 300.70023 * 3 2 1 30 30 H 1.09005 * 110.48346 * 23.00033 * 4 2 1 31 31 H 1.08997 * 110.48723 * 145.64261 * 4 2 1 32 32 H 1.09001 * 110.75560 * 203.73845 * 5 4 2 33 33 H 1.09001 * 110.75486 * 80.37018 * 5 4 2 34 34 H 1.09003 * 110.49017 * 279.26224 * 6 5 4 35 35 H 1.09010 * 110.48493 * 156.62125 * 6 5 4 36 36 H 1.08996 * 109.47511 * 294.99479 * 9 7 2 37 37 H 1.08998 * 109.47187 * 55.00383 * 9 7 2 38 38 H 0.96997 * 120.00457 * 344.99967 * 10 9 7 39 39 H 1.08998 * 109.46915 * 299.99552 * 14 11 10 40 40 H 1.08993 * 109.47608 * 59.99772 * 14 11 10 41 41 H 1.09005 * 109.47057 * 299.99719 * 15 14 11 42 42 H 1.08999 * 109.47440 * 59.99774 * 15 14 11 43 43 H 0.97004 * 119.99045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2366 5 6 2.3281 -2.1904 -0.7182 6 6 2.8875 -1.9403 0.7042 7 6 2.0571 -0.7530 1.2340 8 1 1.2230 -1.1188 1.8327 9 6 2.9409 0.1713 2.0740 10 7 3.3383 -0.5183 3.3040 11 16 4.5803 0.0779 4.2230 12 8 4.6951 -0.8447 5.2977 13 8 5.6436 0.2616 3.2985 14 6 3.9727 1.6791 4.8209 15 6 5.0438 2.3377 5.6927 16 6 4.5388 3.6677 6.1899 17 1 3.5528 4.0093 5.9116 18 6 5.3361 4.4490 6.9993 19 7 4.8955 5.6099 7.4327 20 14 7.0418 3.8586 7.4801 21 1 8.0296 4.3281 6.4756 22 1 7.3963 4.4036 8.8152 23 1 7.0557 2.3746 7.5317 24 1 -0.3633 0.4920 0.9022 25 1 -0.3633 -1.0274 -0.0250 26 1 -0.3634 0.5353 -0.8773 27 1 1.7055 1.9511 0.8962 28 1 3.1436 1.4273 -0.0126 29 1 1.6851 1.9586 -0.8837 30 1 1.3061 -0.7704 -2.0252 31 1 2.9811 -0.3007 -1.5966 32 1 3.0676 -2.6937 -1.3412 33 1 1.4031 -2.7654 -0.6740 34 1 3.9441 -1.6763 0.6578 35 1 2.7402 -2.8191 1.3321 36 1 3.8305 0.4399 1.5044 37 1 2.3851 1.0742 2.3270 38 1 2.8741 -1.3240 3.5800 39 1 3.7501 2.3237 3.9706 40 1 3.0676 1.5278 5.4090 41 1 5.2669 1.6933 6.5430 42 1 5.9487 2.4892 5.1042 43 1 5.4563 6.1593 8.0025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339109867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = -128.810176 kcal Electronic energy + Delta-G solvation = -21921.174418 eV Core-core repulsion = 18705.188258 eV Total energy + Delta-G solvation = -3215.986159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55412 -38.15325 -37.03078 -35.89351 -35.88645 -33.47109 -33.07102 -30.32961 -28.30804 -27.87058 -25.89121 -24.31007 -23.18303 -21.48780 -20.43162 -19.53320 -19.15047 -18.17513 -17.49878 -17.03808 -16.51122 -16.33171 -16.01598 -15.66463 -15.38377 -15.14885 -14.82194 -14.34556 -14.13871 -13.79937 -13.78719 -13.32056 -13.23762 -13.21870 -13.07001 -13.05707 -12.94334 -12.65895 -12.36949 -12.23520 -11.96867 -11.84538 -11.81323 -11.70295 -11.40305 -11.37664 -11.31153 -11.24830 -11.14832 -10.84206 -10.24375 -8.36500 -6.42048 -0.68482 1.32144 1.34045 1.44178 1.84053 2.29750 2.77368 2.97634 3.26215 3.59108 3.67177 3.71421 3.91400 4.09130 4.24973 4.38714 4.41753 4.46959 4.49518 4.55406 4.59406 4.61846 4.69189 4.89170 4.93169 4.98412 5.02781 5.08047 5.10898 5.13045 5.17123 5.20104 5.29907 5.32194 5.47469 5.48457 5.50759 5.55162 5.63185 6.16584 6.17231 6.63963 7.22383 8.79060 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.003945 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.292954 B = 7095.916550 C = 7714.698569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.085 4.085 8 H 0.092 0.908 9 C 0.107 3.893 10 N -1.107 6.107 11 S 2.623 3.377 12 O -0.996 6.996 13 O -0.992 6.992 14 C -0.590 4.590 15 C -0.018 4.018 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.940 5.940 20 Si 0.925 3.075 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.250 1.250 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.424 0.576 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 -15.191 -17.788 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.214 4.214 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.105 4.105 8 H 0.111 0.889 9 C -0.019 4.019 10 N -0.869 5.869 11 S 2.718 3.282 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.721 4.721 15 C -0.057 4.057 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.580 5.580 20 Si 0.747 3.253 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.174 1.174 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.261 0.739 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.058 -15.326 -17.604 24.693 hybrid contribution 0.079 0.521 0.729 0.900 sum -7.979 -14.805 -16.875 23.825 Atomic orbital electron populations 1.21895 0.93283 1.02104 1.02059 1.21162 0.96192 0.94912 0.93991 1.22152 1.01132 0.95698 1.02456 1.22508 1.00949 0.95108 0.96754 1.22470 1.01053 0.96892 0.95469 1.22496 0.99113 0.97711 0.97051 1.22066 0.97655 0.94946 0.95854 0.88948 1.21948 0.99732 0.95943 0.84253 1.55277 1.55763 1.39880 1.35959 1.04354 0.74166 0.76439 0.73192 1.93515 1.86295 1.61481 1.57292 1.93512 1.54299 1.87350 1.63019 1.30292 1.10549 1.20098 1.11150 1.19376 0.94295 0.96620 0.95407 1.21183 1.02741 1.02135 1.30545 0.93203 1.25867 1.02434 0.94747 0.95440 1.70011 1.39307 1.12694 1.35948 0.86028 0.80162 0.80322 0.78749 1.18503 1.19913 1.17363 0.92610 0.92030 0.92143 0.91994 0.92619 0.91929 0.90669 0.91938 0.91449 0.90682 0.92592 0.91137 0.90819 0.90064 0.73933 0.84231 0.84122 0.95031 0.95050 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.14 71.98 0.59 -1.03 16 2 C -0.06 -0.86 0.94 -51.46 -0.05 -0.91 16 3 C -0.16 -2.43 7.19 71.98 0.52 -1.92 16 4 C -0.12 -1.52 5.90 31.67 0.19 -1.33 16 5 C -0.12 -1.57 6.91 31.88 0.22 -1.35 16 6 C -0.13 -2.01 6.19 31.67 0.20 -1.82 16 7 C -0.09 -1.32 2.62 -10.07 -0.03 -1.34 16 8 H 0.09 1.24 7.67 -2.39 -0.02 1.22 16 9 C 0.11 2.10 4.23 86.38 0.37 2.47 16 10 N -1.11 -24.74 5.70 -187.49 -1.07 -25.81 16 11 S 2.62 84.53 5.46 -56.49 -0.31 84.22 16 12 O -1.00 -37.76 18.08 -127.65 -2.31 -40.06 16 13 O -0.99 -37.51 17.50 -127.65 -2.23 -39.74 16 14 C -0.59 -20.78 6.01 71.98 0.43 -20.35 16 15 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 16 C -0.53 -29.75 9.66 25.60 0.25 -29.50 16 17 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 18 C 0.01 0.79 5.47 84.66 0.46 1.26 16 19 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 20 Si 0.92 43.93 27.47 68.60 1.88 45.81 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.96 6.66 -2.39 -0.02 0.95 16 28 H 0.05 0.94 6.82 -2.39 -0.02 0.93 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.84 7.84 -2.38 -0.02 0.82 16 31 H 0.06 0.90 7.85 -2.39 -0.02 0.88 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 1.09 7.76 -2.39 -0.02 1.07 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.62 6.44 -2.39 -0.02 1.60 16 37 H 0.08 1.43 6.44 -2.39 -0.02 1.41 16 38 H 0.42 7.65 8.62 -96.74 -0.83 6.81 16 39 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 40 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.03 1.47 7.20 -2.38 -0.02 1.45 16 42 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 43 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -72.35 346.69 -0.38 -72.73 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.09 Total: 16.87 kcal Atomic # 6 Polarization: -59.80 SS G_CDS: 3.26 Total: -56.54 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -0.77 Total: -83.28 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -4.54 Total: -79.81 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Atomic # 16 Polarization: 84.53 SS G_CDS: -0.31 Total: 84.22 kcal Total: -72.35 -0.38 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339109867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.076 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds