Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48496 * 109.47116 * 269.99493 * 3 2 1 5 5 H 1.48500 * 109.46861 * 30.00029 * 3 2 1 6 6 H 1.48498 * 109.46835 * 149.99738 * 3 2 1 7 7 C 1.37883 * 119.99482 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00265 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99337 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46836 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99849 * 270.00010 * 10 9 7 12 12 C 1.50693 * 109.47514 * 269.99729 * 11 10 9 13 13 C 1.34516 * 125.78945 * 89.71331 * 12 11 10 14 14 C 1.41381 * 106.84099 * 179.89481 * 13 12 11 15 15 C 1.34507 * 106.84144 * 0.37521 * 14 13 12 16 16 O 1.34298 * 125.79437 * 270.03172 * 12 11 10 17 17 C 1.34775 * 119.99939 * 90.00178 * 10 9 7 18 18 O 1.21285 * 119.99921 * 359.97438 * 17 10 9 19 19 C 1.50697 * 119.99977 * 180.02562 * 17 10 9 20 20 H 1.09001 * 115.56175 * 325.68230 * 19 17 10 21 21 C 1.52995 * 117.50151 * 111.37547 * 19 17 10 22 22 C 1.53000 * 117.50047 * 180.02562 * 19 17 10 23 23 H 1.08994 * 117.52502 * 145.02452 * 22 19 17 24 24 C 1.53008 * 117.49724 * 359.97438 * 22 19 17 25 25 C 1.53000 * 117.49506 * 59.99107 * 24 22 19 26 26 C 1.53002 * 60.02940 * 107.50086 * 25 24 22 27 27 H 0.97006 * 120.00242 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47486 * 60.00350 * 9 7 2 29 29 H 1.08997 * 109.47308 * 299.99953 * 9 7 2 30 30 H 1.09001 * 109.47310 * 30.00155 * 11 10 9 31 31 H 1.09007 * 109.46917 * 149.99973 * 11 10 9 32 32 H 1.08004 * 126.57717 * 0.03745 * 13 12 11 33 33 H 1.08005 * 126.57487 * 180.17165 * 14 13 12 34 34 H 1.08004 * 125.78863 * 179.75571 * 15 14 13 35 35 H 1.08997 * 117.50089 * 359.97438 * 21 19 17 36 36 H 1.09004 * 117.49839 * 214.97830 * 21 19 17 37 37 H 1.08999 * 115.55053 * 274.32450 * 24 22 19 38 38 H 1.09002 * 117.49833 * 215.00191 * 25 24 22 39 39 H 1.09002 * 117.49953 * 0.02562 * 25 24 22 40 40 H 1.09000 * 117.49996 * 107.50493 * 26 25 24 41 41 H 1.08999 * 117.49664 * 252.51862 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.2434 -3.2663 1.2696 12 6 5.6664 -3.0297 1.7053 13 6 6.0950 -2.0124 2.4739 14 6 7.4896 -2.1799 2.6349 15 6 7.8312 -3.2849 1.9482 16 8 6.7229 -3.7954 1.3872 17 6 4.2248 -3.2105 -1.1662 18 8 4.0227 -2.6386 -2.2165 19 6 4.7266 -4.6315 -1.1664 20 1 5.4054 -4.8906 -0.3539 21 6 3.7705 -5.7182 -1.6619 22 6 4.9632 -5.2970 -2.5236 23 1 5.7971 -5.9943 -2.6041 24 6 4.6717 -4.4690 -3.7768 25 6 5.4596 -3.1710 -3.9649 26 6 5.7690 -4.3867 -4.8409 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6802 0.8911 29 1 3.8751 -0.6805 -0.8888 30 1 3.5623 -2.8823 2.0291 31 1 4.0764 -4.3355 1.1390 32 1 5.4895 -1.2208 2.8903 33 1 8.1538 -1.5411 3.1982 34 1 8.8278 -3.6923 1.8623 35 1 2.7784 -5.4055 -1.9875 36 1 3.8203 -6.6924 -1.1754 37 1 3.6374 -4.4842 -4.1203 38 1 4.9435 -2.3323 -4.4321 39 1 6.1858 -2.9071 -3.1960 40 1 5.4567 -4.3477 -5.8844 41 1 6.6984 -4.9226 -4.6479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339584384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = 46.301486 kcal Electronic energy + Delta-G solvation = -23597.349937 eV Core-core repulsion = 20253.513238 eV Total energy + Delta-G solvation = -3343.836699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40395 -39.77286 -37.29697 -35.09537 -34.71878 -32.84927 -32.58782 -30.32831 -28.28627 -25.59019 -24.48596 -23.26090 -22.07774 -21.60952 -21.50111 -20.55079 -19.93856 -18.17731 -17.32050 -16.83398 -16.57786 -15.91424 -15.41736 -15.13020 -14.73607 -14.44937 -14.18532 -13.70268 -13.45941 -12.74071 -12.70513 -12.66983 -12.53778 -12.34546 -12.01278 -11.71186 -11.50908 -11.23948 -11.03995 -10.90853 -10.68886 -10.62335 -10.52913 -10.18984 -9.78956 -9.66975 -9.50068 -9.44368 -8.60861 -8.54534 -8.35410 -7.78006 -6.10311 -4.09052 1.82598 2.73607 3.01006 3.27088 3.28031 3.34089 3.36466 3.78318 4.03815 4.34122 4.38244 4.83742 4.84618 5.03539 5.07343 5.16898 5.17761 5.21673 5.28326 5.44218 5.49380 5.54185 5.62967 5.77672 5.85180 5.87354 5.92681 5.93750 6.09098 6.14415 6.23823 6.33182 6.43160 6.58534 6.62904 6.69240 6.70122 6.94032 7.22496 7.35230 7.59193 8.20485 8.45403 8.92510 9.01914 9.50275 11.02904 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.007419 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.630095 B = 3773.024893 C = 5511.762637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.588 5.588 11 C 0.192 3.808 12 C -0.024 4.024 13 C -0.199 4.199 14 C -0.214 4.214 15 C -0.050 4.050 16 O -0.176 6.176 17 C 0.538 3.462 18 O -0.513 6.513 19 C -0.187 4.187 20 H 0.119 0.881 21 C -0.148 4.148 22 C -0.091 4.091 23 H 0.107 0.893 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.206 4.206 27 H 0.264 0.736 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.198 0.802 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.391 -10.145 1.714 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.094 0.906 9 C 0.098 3.902 10 N -0.320 5.320 11 C 0.067 3.933 12 C -0.075 4.075 13 C -0.219 4.219 14 C -0.233 4.233 15 C -0.118 4.118 16 O -0.072 6.072 17 C 0.325 3.675 18 O -0.389 6.389 19 C -0.209 4.209 20 H 0.137 0.863 21 C -0.186 4.186 22 C -0.110 4.110 23 H 0.125 0.875 24 C -0.124 4.124 25 C -0.152 4.152 26 C -0.243 4.243 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.215 0.785 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.070 -9.936 0.955 17.251 hybrid contribution 0.551 1.192 0.460 1.391 sum 14.621 -8.744 1.415 17.095 Atomic orbital electron populations 1.69892 1.06164 1.26965 1.50474 1.24832 0.94716 0.98840 0.94458 0.86896 0.80226 0.83965 0.78900 1.19951 1.21071 1.19047 1.21319 0.89088 0.94833 1.51381 0.90616 1.19657 0.95561 0.77528 0.97429 1.47927 1.64376 1.15984 1.03668 1.19895 0.85818 0.98913 0.88643 1.23384 0.90108 0.93324 1.00703 1.21696 0.95226 1.00842 1.04131 1.21817 0.96072 0.99997 1.05416 1.23939 0.90434 0.97369 1.00010 1.83998 1.15533 1.47943 1.59711 1.19459 0.77745 0.86480 0.83770 1.90706 1.50705 1.67513 1.29974 1.22403 1.05199 0.93269 0.99998 0.86303 1.23002 0.95675 0.97328 1.02562 1.21738 0.99670 1.00067 0.89524 0.87511 1.21442 0.96388 1.00333 0.94276 1.22502 1.01316 0.91351 1.00007 1.23250 0.99726 1.05098 0.96221 0.92565 0.95348 0.94539 0.86595 0.89360 0.83375 0.83788 0.78545 0.87983 0.88184 0.88036 0.89049 0.90040 0.89613 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 10 N -0.59 -11.95 2.44 -176.43 -0.43 -12.38 16 11 C 0.19 3.10 5.58 -5.20 -0.03 3.07 16 12 C -0.02 -0.36 6.78 -35.63 -0.24 -0.60 16 13 C -0.20 -2.97 10.81 -39.70 -0.43 -3.39 16 14 C -0.21 -2.72 10.91 -39.71 -0.43 -3.15 16 15 C -0.05 -0.59 12.09 29.41 0.36 -0.23 16 16 O -0.18 -2.51 9.58 5.73 0.05 -2.45 16 17 C 0.54 10.80 7.29 -10.99 -0.08 10.72 16 18 O -0.51 -11.81 11.11 5.55 0.06 -11.74 16 19 C -0.19 -2.90 4.78 -91.78 -0.44 -3.34 16 20 H 0.12 1.68 6.05 -51.93 -0.31 1.37 16 21 C -0.15 -2.01 9.96 -26.71 -0.27 -2.28 16 22 C -0.09 -1.28 5.87 -90.59 -0.53 -1.81 16 23 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 24 C -0.11 -1.66 4.48 -90.58 -0.41 -2.07 16 25 C -0.11 -1.91 7.08 -26.73 -0.19 -2.10 16 26 C -0.21 -2.78 10.26 -26.69 -0.27 -3.05 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 30 H 0.12 1.83 8.07 -51.93 -0.42 1.42 16 31 H 0.09 1.23 6.64 -51.92 -0.34 0.88 16 32 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.20 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.09 1.64 8.06 -51.93 -0.42 1.22 16 39 H 0.08 1.43 7.96 -51.93 -0.41 1.01 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -32.56 340.97 -8.53 -41.08 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.03 Total: 6.22 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.42 Total: -16.12 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.34 Total: -38.91 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.12 Total: -14.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.56 -8.53 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.383 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds