Wall clock time and date at job start Tue Mar 31 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48496 * 109.47116 * 269.99493 * 3 2 1 5 5 H 1.48500 * 109.46861 * 30.00029 * 3 2 1 6 6 H 1.48498 * 109.46835 * 149.99738 * 3 2 1 7 7 C 1.37883 * 119.99482 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00265 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99337 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46836 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99849 * 270.00010 * 10 9 7 12 12 C 1.50693 * 109.47514 * 269.99729 * 11 10 9 13 13 C 1.34516 * 125.78945 * 89.71331 * 12 11 10 14 14 C 1.41381 * 106.84099 * 179.89481 * 13 12 11 15 15 C 1.34507 * 106.84144 * 0.37521 * 14 13 12 16 16 O 1.34298 * 125.79437 * 270.03172 * 12 11 10 17 17 C 1.34775 * 119.99939 * 90.00178 * 10 9 7 18 18 O 1.21285 * 119.99921 * 359.97438 * 17 10 9 19 19 C 1.50697 * 119.99977 * 180.02562 * 17 10 9 20 20 H 1.09001 * 115.56175 * 325.68230 * 19 17 10 21 21 C 1.52995 * 117.50151 * 111.37547 * 19 17 10 22 22 C 1.53000 * 117.50047 * 180.02562 * 19 17 10 23 23 H 1.08994 * 117.52502 * 145.02452 * 22 19 17 24 24 C 1.53008 * 117.49724 * 359.97438 * 22 19 17 25 25 C 1.53000 * 117.49506 * 59.99107 * 24 22 19 26 26 C 1.53002 * 60.02940 * 107.50086 * 25 24 22 27 27 H 0.97006 * 120.00242 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47486 * 60.00350 * 9 7 2 29 29 H 1.08997 * 109.47308 * 299.99953 * 9 7 2 30 30 H 1.09001 * 109.47310 * 30.00155 * 11 10 9 31 31 H 1.09007 * 109.46917 * 149.99973 * 11 10 9 32 32 H 1.08004 * 126.57717 * 0.03745 * 13 12 11 33 33 H 1.08005 * 126.57487 * 180.17165 * 14 13 12 34 34 H 1.08004 * 125.78863 * 179.75571 * 15 14 13 35 35 H 1.08997 * 117.50089 * 359.97438 * 21 19 17 36 36 H 1.09004 * 117.49839 * 214.97830 * 21 19 17 37 37 H 1.08999 * 115.55053 * 274.32450 * 24 22 19 38 38 H 1.09002 * 117.49833 * 215.00191 * 25 24 22 39 39 H 1.09002 * 117.49953 * 0.02562 * 25 24 22 40 40 H 1.09000 * 117.49996 * 107.50493 * 26 25 24 41 41 H 1.08999 * 117.49664 * 252.51862 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.2434 -3.2663 1.2696 12 6 5.6664 -3.0297 1.7053 13 6 6.0950 -2.0124 2.4739 14 6 7.4896 -2.1799 2.6349 15 6 7.8312 -3.2849 1.9482 16 8 6.7229 -3.7954 1.3872 17 6 4.2248 -3.2105 -1.1662 18 8 4.0227 -2.6386 -2.2165 19 6 4.7266 -4.6315 -1.1664 20 1 5.4054 -4.8906 -0.3539 21 6 3.7705 -5.7182 -1.6619 22 6 4.9632 -5.2970 -2.5236 23 1 5.7971 -5.9943 -2.6041 24 6 4.6717 -4.4690 -3.7768 25 6 5.4596 -3.1710 -3.9649 26 6 5.7690 -4.3867 -4.8409 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6802 0.8911 29 1 3.8751 -0.6805 -0.8888 30 1 3.5623 -2.8823 2.0291 31 1 4.0764 -4.3355 1.1390 32 1 5.4895 -1.2208 2.8903 33 1 8.1538 -1.5411 3.1982 34 1 8.8278 -3.6923 1.8623 35 1 2.7784 -5.4055 -1.9875 36 1 3.8203 -6.6924 -1.1754 37 1 3.6374 -4.4842 -4.1203 38 1 4.9435 -2.3323 -4.4321 39 1 6.1858 -2.9071 -3.1960 40 1 5.4567 -4.3477 -5.8844 41 1 6.6984 -4.9226 -4.6479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339584384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:50 Heat of formation + Delta-G solvation = 27.654619 kcal Electronic energy + Delta-G solvation = -23598.158526 eV Core-core repulsion = 20253.513238 eV Total energy + Delta-G solvation = -3344.645288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.44362 -41.19105 -38.65623 -36.67784 -35.94868 -34.76745 -33.84157 -31.75864 -30.03495 -26.83638 -26.09798 -24.52981 -23.49124 -22.97021 -22.60525 -21.66485 -21.21522 -19.54907 -19.17223 -18.30678 -17.91166 -17.27881 -16.70196 -16.47980 -16.19958 -15.86260 -15.62725 -15.18488 -14.83204 -14.57099 -14.00249 -13.97251 -13.74021 -13.60032 -13.49752 -13.26592 -13.08615 -12.67823 -12.50423 -12.36943 -12.19824 -12.12382 -11.88748 -11.77757 -11.71329 -10.89831 -10.83982 -10.81211 -10.67196 -9.95801 -9.58339 -9.32136 -8.34998 -6.39072 0.76063 1.29627 1.32975 1.41325 1.64967 1.71907 2.13788 2.28379 2.36768 2.78564 2.99301 3.15941 3.59377 3.76814 3.84935 3.96604 4.03336 4.11662 4.17463 4.29546 4.32962 4.38225 4.47747 4.58187 4.60002 4.74119 4.83445 4.86219 4.91178 4.94950 5.02142 5.06427 5.15162 5.22615 5.27850 5.35687 5.41302 5.43742 5.56046 5.65233 6.22195 6.25021 6.62237 6.66249 7.21871 7.47297 8.81688 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.007419 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.630095 B = 3773.024893 C = 5511.762637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.242 1.242 7 C -0.530 4.530 8 H 0.034 0.966 9 C 0.232 3.768 10 N -0.597 5.597 11 C 0.192 3.808 12 C -0.043 4.043 13 C -0.212 4.212 14 C -0.229 4.229 15 C -0.034 4.034 16 O -0.182 6.182 17 C 0.525 3.475 18 O -0.555 6.555 19 C -0.194 4.194 20 H 0.140 0.860 21 C -0.137 4.137 22 C -0.082 4.082 23 H 0.144 0.856 24 C -0.121 4.121 25 C -0.137 4.137 26 C -0.168 4.168 27 H 0.268 0.732 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.242 0.758 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.773 -11.656 2.337 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.052 0.948 9 C 0.110 3.890 10 N -0.328 5.328 11 C 0.069 3.931 12 C -0.094 4.094 13 C -0.232 4.232 14 C -0.248 4.248 15 C -0.101 4.101 16 O -0.078 6.078 17 C 0.314 3.686 18 O -0.433 6.433 19 C -0.215 4.215 20 H 0.158 0.842 21 C -0.174 4.174 22 C -0.100 4.100 23 H 0.161 0.839 24 C -0.140 4.140 25 C -0.174 4.174 26 C -0.204 4.204 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.258 0.742 35 H 0.094 0.906 36 H 0.159 0.841 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.468 -11.481 1.612 20.965 hybrid contribution -0.521 1.612 0.256 1.713 sum 16.947 -9.869 1.868 19.700 Atomic orbital electron populations 1.70034 1.08021 1.28201 1.52003 1.25739 0.95558 1.02903 0.94025 0.85827 0.79888 0.79070 0.78870 1.20410 1.19853 1.16566 1.21517 0.91274 0.93297 1.50776 0.94788 1.19225 0.92725 0.80281 0.96739 1.47975 1.64279 1.14851 1.05670 1.19959 0.86927 0.99665 0.86572 1.22986 0.89983 0.94338 1.02092 1.21928 0.96751 1.00547 1.04014 1.22129 0.95225 1.01064 1.06360 1.24835 0.91092 0.96456 0.97754 1.83978 1.15843 1.47967 1.60018 1.20367 0.76960 0.88252 0.82975 1.90697 1.52435 1.68841 1.31333 1.22315 1.06702 0.90467 1.01989 0.84218 1.23114 0.94197 0.98093 1.01986 1.21922 1.00841 0.99565 0.87661 0.83876 1.21489 0.95980 1.00108 0.96400 1.22288 1.02034 0.91710 1.01407 1.23306 0.99571 1.01550 0.96009 0.92296 0.93989 0.96681 0.87140 0.87118 0.83865 0.81515 0.74191 0.90602 0.84145 0.90340 0.91879 0.91223 0.88421 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 7 C -0.53 -31.09 9.94 25.60 0.25 -30.83 16 8 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 9 C 0.23 11.48 4.23 85.63 0.36 11.84 16 10 N -0.60 -24.78 2.44 -830.50 -2.03 -26.80 16 11 C 0.19 6.15 5.58 85.63 0.48 6.63 16 12 C -0.04 -1.26 6.78 24.83 0.17 -1.09 16 13 C -0.21 -6.05 10.81 22.19 0.24 -5.81 16 14 C -0.23 -5.16 10.91 22.19 0.24 -4.92 16 15 C -0.03 -0.68 12.09 66.97 0.81 0.13 16 16 O -0.18 -4.66 9.58 -2.42 -0.02 -4.68 16 17 C 0.52 21.53 7.29 87.66 0.64 22.17 16 18 O -0.55 -26.81 11.11 -3.05 -0.03 -26.84 16 19 C -0.19 -5.72 4.78 -11.54 -0.06 -5.77 16 20 H 0.14 3.54 6.05 -2.39 -0.01 3.53 16 21 C -0.14 -3.45 9.96 30.61 0.30 -3.15 16 22 C -0.08 -2.09 5.87 -10.77 -0.06 -2.16 16 23 H 0.14 2.68 8.14 -2.39 -0.02 2.67 16 24 C -0.12 -3.75 4.48 -10.77 -0.05 -3.80 16 25 C -0.14 -4.65 7.08 30.60 0.22 -4.44 16 26 C -0.17 -4.17 10.26 30.62 0.31 -3.85 16 27 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 28 H 0.04 1.95 7.13 -2.39 -0.02 1.93 16 29 H 0.02 0.81 6.85 -2.39 -0.02 0.79 16 30 H 0.11 3.58 8.07 -2.39 -0.02 3.56 16 31 H 0.11 2.97 6.64 -2.38 -0.02 2.96 16 32 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.24 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.14 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 39 H 0.07 2.49 7.96 -2.39 -0.02 2.47 16 40 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -75.57 340.97 5.39 -70.19 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.96 Total: 24.08 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.32 Total: -23.62 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.73 Total: -86.06 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.06 Total: -31.53 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -75.57 5.39 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.841 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds